Experiment: KB with Nalidixic 12.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4784 and Psyr_4785 are separated by 228 nucleotides Psyr_4785 and Psyr_4786 are separated by 55 nucleotides Psyr_4786 and Psyr_4787 are separated by 319 nucleotides
Psyr_4784: Psyr_4784 - Peptidase M19, renal dipeptidase, at 5,672,647 to 5,673,624
_4784
Psyr_4785: Psyr_4785 - Protein of unknown function DUF1311, at 5,673,853 to 5,674,263
_4785
Psyr_4786: Psyr_4786 - hypothetical protein, at 5,674,319 to 5,674,738
_4786
Psyr_4787: Psyr_4787 - fructose-bisphosphate aldolase, at 5,675,058 to 5,676,122
_4787
Position (kb) 5673
5674
5675 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5672.884 kb on - strand, within Psyr_4784 at 5672.924 kb on + strand, within Psyr_4784 at 5672.924 kb on + strand, within Psyr_4784 at 5672.924 kb on + strand, within Psyr_4784 at 5672.924 kb on + strand, within Psyr_4784 at 5672.924 kb on + strand, within Psyr_4784 at 5672.924 kb on + strand, within Psyr_4784 at 5672.925 kb on - strand, within Psyr_4784 at 5672.925 kb on - strand, within Psyr_4784 at 5672.925 kb on - strand, within Psyr_4784 at 5672.925 kb on - strand, within Psyr_4784 at 5672.943 kb on - strand, within Psyr_4784 at 5673.092 kb on + strand, within Psyr_4784 at 5673.092 kb on + strand, within Psyr_4784 at 5673.092 kb on + strand, within Psyr_4784 at 5673.093 kb on - strand, within Psyr_4784 at 5673.234 kb on - strand, within Psyr_4784 at 5673.266 kb on + strand, within Psyr_4784 at 5673.266 kb on + strand, within Psyr_4784 at 5673.267 kb on - strand, within Psyr_4784 at 5673.267 kb on - strand, within Psyr_4784 at 5673.267 kb on - strand, within Psyr_4784 at 5673.315 kb on - strand, within Psyr_4784 at 5673.332 kb on + strand, within Psyr_4784 at 5673.332 kb on + strand, within Psyr_4784 at 5673.333 kb on - strand, within Psyr_4784 at 5673.333 kb on - strand, within Psyr_4784 at 5673.607 kb on + strand at 5673.607 kb on + strand at 5673.688 kb on + strand at 5673.688 kb on + strand at 5673.688 kb on + strand at 5673.688 kb on + strand at 5673.688 kb on + strand at 5673.689 kb on - strand at 5673.689 kb on - strand at 5673.689 kb on - strand at 5673.689 kb on - strand at 5673.790 kb on - strand at 5673.905 kb on + strand, within Psyr_4785 at 5673.905 kb on + strand, within Psyr_4785 at 5673.905 kb on + strand, within Psyr_4785 at 5673.905 kb on + strand, within Psyr_4785 at 5673.905 kb on + strand, within Psyr_4785 at 5673.905 kb on + strand, within Psyr_4785 at 5673.905 kb on + strand, within Psyr_4785 at 5673.905 kb on + strand, within Psyr_4785 at 5673.905 kb on + strand, within Psyr_4785 at 5673.905 kb on + strand, within Psyr_4785 at 5673.905 kb on + strand, within Psyr_4785 at 5673.905 kb on + strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5674.086 kb on + strand, within Psyr_4785 at 5674.237 kb on + strand at 5674.238 kb on - strand at 5674.262 kb on - strand at 5674.291 kb on + strand at 5674.291 kb on + strand at 5674.291 kb on + strand at 5674.291 kb on + strand at 5674.292 kb on - strand at 5674.292 kb on - strand at 5674.292 kb on - strand at 5674.292 kb on - strand at 5674.292 kb on - strand at 5674.292 kb on - strand at 5674.292 kb on - strand at 5674.292 kb on - strand at 5674.292 kb on - strand at 5674.292 kb on - strand at 5674.292 kb on - strand at 5674.292 kb on - strand at 5674.292 kb on - strand at 5674.292 kb on - strand at 5674.293 kb on + strand at 5674.293 kb on + strand at 5674.293 kb on + strand at 5674.294 kb on - strand at 5674.294 kb on - strand at 5674.294 kb on - strand at 5674.294 kb on - strand at 5674.294 kb on - strand at 5674.294 kb on - strand at 5674.324 kb on + strand at 5674.324 kb on + strand at 5674.325 kb on - strand at 5674.325 kb on - strand at 5674.325 kb on - strand at 5674.335 kb on + strand at 5674.335 kb on + strand at 5674.336 kb on - strand at 5674.685 kb on + strand, within Psyr_4786 at 5674.686 kb on - strand, within Psyr_4786 at 5674.700 kb on + strand at 5674.700 kb on + strand at 5674.700 kb on + strand at 5674.700 kb on + strand at 5674.700 kb on + strand at 5674.700 kb on + strand at 5674.700 kb on + strand at 5674.700 kb on + strand at 5674.701 kb on - strand at 5674.701 kb on - strand at 5674.701 kb on - strand at 5674.701 kb on - strand at 5674.701 kb on - strand at 5674.778 kb on + strand at 5674.778 kb on + strand at 5674.860 kb on - strand at 5674.860 kb on - strand at 5674.881 kb on + strand at 5674.881 kb on + strand at 5674.951 kb on + strand at 5674.951 kb on + strand at 5674.951 kb on + strand at 5674.952 kb on - strand at 5674.952 kb on - strand at 5674.952 kb on - strand at 5675.013 kb on + strand at 5675.013 kb on + strand at 5675.013 kb on + strand at 5675.014 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nalidixic 12.5 ug/ml remove 5,672,884 - Psyr_4784 0.24 -0.8 5,672,924 + Psyr_4784 0.28 +0.2 5,672,924 + Psyr_4784 0.28 +0.5 5,672,924 + Psyr_4784 0.28 +0.9 5,672,924 + Psyr_4784 0.28 +0.1 5,672,924 + Psyr_4784 0.28 +1.3 5,672,924 + Psyr_4784 0.28 -1.2 5,672,925 - Psyr_4784 0.28 -0.8 5,672,925 - Psyr_4784 0.28 -0.2 5,672,925 - Psyr_4784 0.28 -1.3 5,672,925 - Psyr_4784 0.28 +0.6 5,672,943 - Psyr_4784 0.30 +0.3 5,673,092 + Psyr_4784 0.46 -0.4 5,673,092 + Psyr_4784 0.46 -1.1 5,673,092 + Psyr_4784 0.46 -0.4 5,673,093 - Psyr_4784 0.46 +0.0 5,673,234 - Psyr_4784 0.60 -0.2 5,673,266 + Psyr_4784 0.63 -1.1 5,673,266 + Psyr_4784 0.63 -0.0 5,673,267 - Psyr_4784 0.63 -0.1 5,673,267 - Psyr_4784 0.63 -0.2 5,673,267 - Psyr_4784 0.63 +0.1 5,673,315 - Psyr_4784 0.68 -0.4 5,673,332 + Psyr_4784 0.70 -0.3 5,673,332 + Psyr_4784 0.70 +1.9 5,673,333 - Psyr_4784 0.70 +1.6 5,673,333 - Psyr_4784 0.70 -0.5 5,673,607 + +0.3 5,673,607 + -0.6 5,673,688 + +0.3 5,673,688 + -0.6 5,673,688 + -0.2 5,673,688 + +0.2 5,673,688 + -3.7 5,673,689 - +2.9 5,673,689 - -0.4 5,673,689 - -1.5 5,673,689 - -0.4 5,673,790 - +0.2 5,673,905 + Psyr_4785 0.13 -1.0 5,673,905 + Psyr_4785 0.13 -2.6 5,673,905 + Psyr_4785 0.13 +0.1 5,673,905 + Psyr_4785 0.13 +1.6 5,673,905 + Psyr_4785 0.13 -0.0 5,673,905 + Psyr_4785 0.13 -0.2 5,673,905 + Psyr_4785 0.13 +0.6 5,673,905 + Psyr_4785 0.13 -1.2 5,673,905 + Psyr_4785 0.13 +0.2 5,673,905 + Psyr_4785 0.13 -0.4 5,673,905 + Psyr_4785 0.13 -0.5 5,673,905 + Psyr_4785 0.13 -1.2 5,673,906 - Psyr_4785 0.13 -1.2 5,673,906 - Psyr_4785 0.13 -2.4 5,673,906 - Psyr_4785 0.13 -0.2 5,673,906 - Psyr_4785 0.13 -1.0 5,673,906 - Psyr_4785 0.13 -0.2 5,673,906 - Psyr_4785 0.13 -1.7 5,673,906 - Psyr_4785 0.13 -1.0 5,673,906 - Psyr_4785 0.13 -0.4 5,673,906 - Psyr_4785 0.13 -0.3 5,673,906 - Psyr_4785 0.13 +0.1 5,673,906 - Psyr_4785 0.13 -0.6 5,673,906 - Psyr_4785 0.13 +0.3 5,673,906 - Psyr_4785 0.13 -1.2 5,673,906 - Psyr_4785 0.13 +2.0 5,673,906 - Psyr_4785 0.13 -1.6 5,673,906 - Psyr_4785 0.13 +2.2 5,673,906 - Psyr_4785 0.13 -0.4 5,673,906 - Psyr_4785 0.13 -1.2 5,674,086 + Psyr_4785 0.57 -0.1 5,674,237 + +0.2 5,674,238 - -1.0 5,674,262 - +0.3 5,674,291 + -0.4 5,674,291 + -0.4 5,674,291 + +0.6 5,674,291 + +0.7 5,674,292 - -0.6 5,674,292 - -1.0 5,674,292 - -2.2 5,674,292 - +0.3 5,674,292 - -0.6 5,674,292 - -0.0 5,674,292 - +0.2 5,674,292 - -1.2 5,674,292 - -0.7 5,674,292 - -2.7 5,674,292 - -0.1 5,674,292 - +0.6 5,674,292 - -1.7 5,674,292 - +1.2 5,674,293 + -1.2 5,674,293 + -0.1 5,674,293 + -0.8 5,674,294 - -0.1 5,674,294 - -0.9 5,674,294 - -0.4 5,674,294 - -0.7 5,674,294 - +0.0 5,674,294 - +0.4 5,674,324 + -0.0 5,674,324 + -0.5 5,674,325 - -0.2 5,674,325 - -1.2 5,674,325 - -0.4 5,674,335 + -1.9 5,674,335 + +0.8 5,674,336 - -0.5 5,674,685 + Psyr_4786 0.87 +0.7 5,674,686 - Psyr_4786 0.87 -0.2 5,674,700 + -0.4 5,674,700 + +0.1 5,674,700 + +0.2 5,674,700 + +1.3 5,674,700 + -0.4 5,674,700 + +0.2 5,674,700 + -0.2 5,674,700 + -1.2 5,674,701 - -1.0 5,674,701 - -0.2 5,674,701 - +0.5 5,674,701 - -1.5 5,674,701 - -1.0 5,674,778 + -0.6 5,674,778 + -2.4 5,674,860 - -0.7 5,674,860 - -1.0 5,674,881 + +0.9 5,674,881 + -1.3 5,674,951 + -0.6 5,674,951 + -0.1 5,674,951 + -0.2 5,674,952 - -1.0 5,674,952 - -0.5 5,674,952 - +1.4 5,675,013 + +1.8 5,675,013 + -0.5 5,675,013 + +0.2 5,675,014 - +2.2
Or see this region's nucleotide sequence