Experiment: KB with Nalidixic 12.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4256 and Psyr_4257 are separated by 108 nucleotides Psyr_4257 and Psyr_4258 are separated by 120 nucleotides Psyr_4258 and Psyr_4259 are separated by 168 nucleotides
Psyr_4256: Psyr_4256 - conserved hypothetical protein, at 5,073,656 to 5,073,964
_4256
Psyr_4257: Psyr_4257 - Uncharacterized protein UPF0114, at 5,074,073 to 5,074,561
_4257
Psyr_4258: Psyr_4258 - conserved hypothetical protein, at 5,074,682 to 5,075,011
_4258
Psyr_4259: Psyr_4259 - ATP-dependent protease, putative, at 5,075,180 to 5,077,615
_4259
Position (kb) 5074
5075
5076 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5073.757 kb on - strand, within Psyr_4256 at 5073.773 kb on + strand, within Psyr_4256 at 5073.773 kb on + strand, within Psyr_4256 at 5073.774 kb on - strand, within Psyr_4256 at 5073.882 kb on + strand, within Psyr_4256 at 5073.882 kb on + strand, within Psyr_4256 at 5073.882 kb on + strand, within Psyr_4256 at 5073.882 kb on + strand, within Psyr_4256 at 5073.882 kb on + strand, within Psyr_4256 at 5073.882 kb on + strand, within Psyr_4256 at 5073.882 kb on + strand, within Psyr_4256 at 5073.883 kb on - strand, within Psyr_4256 at 5073.883 kb on - strand, within Psyr_4256 at 5073.883 kb on - strand, within Psyr_4256 at 5073.883 kb on - strand, within Psyr_4256 at 5073.958 kb on - strand at 5073.958 kb on - strand at 5074.011 kb on + strand at 5074.012 kb on - strand at 5074.012 kb on - strand at 5074.099 kb on - strand at 5074.146 kb on + strand, within Psyr_4257 at 5074.146 kb on + strand, within Psyr_4257 at 5074.146 kb on + strand, within Psyr_4257 at 5074.146 kb on + strand, within Psyr_4257 at 5074.147 kb on - strand, within Psyr_4257 at 5074.147 kb on - strand, within Psyr_4257 at 5074.147 kb on - strand, within Psyr_4257 at 5074.147 kb on - strand, within Psyr_4257 at 5074.159 kb on - strand, within Psyr_4257 at 5074.503 kb on + strand, within Psyr_4257 at 5074.503 kb on + strand, within Psyr_4257 at 5074.504 kb on - strand, within Psyr_4257 at 5074.504 kb on - strand, within Psyr_4257 at 5074.504 kb on - strand, within Psyr_4257 at 5074.533 kb on + strand at 5074.533 kb on + strand at 5074.533 kb on + strand at 5074.533 kb on + strand at 5074.533 kb on + strand at 5074.533 kb on + strand at 5074.533 kb on + strand at 5074.533 kb on + strand at 5074.533 kb on + strand at 5074.533 kb on + strand at 5074.533 kb on + strand at 5074.533 kb on + strand at 5074.533 kb on + strand at 5074.533 kb on + strand at 5074.533 kb on + strand at 5074.533 kb on + strand at 5074.533 kb on + strand at 5074.533 kb on + strand at 5074.533 kb on + strand at 5074.534 kb on - strand at 5074.534 kb on - strand at 5074.534 kb on - strand at 5074.534 kb on - strand at 5074.534 kb on - strand at 5074.534 kb on - strand at 5074.534 kb on - strand at 5074.534 kb on - strand at 5074.534 kb on - strand at 5074.534 kb on - strand at 5074.534 kb on - strand at 5074.534 kb on - strand at 5074.534 kb on - strand at 5074.581 kb on + strand at 5074.581 kb on + strand at 5074.581 kb on + strand at 5074.582 kb on - strand at 5074.597 kb on + strand at 5074.597 kb on + strand at 5074.598 kb on - strand at 5074.598 kb on - strand at 5074.598 kb on - strand at 5074.599 kb on + strand at 5074.599 kb on + strand at 5074.599 kb on + strand at 5074.600 kb on - strand at 5074.600 kb on - strand at 5074.600 kb on - strand at 5074.600 kb on - strand at 5074.654 kb on + strand at 5074.683 kb on + strand at 5074.745 kb on + strand, within Psyr_4258 at 5074.745 kb on + strand, within Psyr_4258 at 5074.745 kb on + strand, within Psyr_4258 at 5074.745 kb on + strand, within Psyr_4258 at 5074.745 kb on + strand, within Psyr_4258 at 5074.745 kb on + strand, within Psyr_4258 at 5074.745 kb on + strand, within Psyr_4258 at 5074.745 kb on + strand, within Psyr_4258 at 5074.745 kb on + strand, within Psyr_4258 at 5074.746 kb on - strand, within Psyr_4258 at 5074.746 kb on - strand, within Psyr_4258 at 5074.746 kb on - strand, within Psyr_4258 at 5074.746 kb on - strand, within Psyr_4258 at 5074.746 kb on - strand, within Psyr_4258 at 5074.746 kb on - strand, within Psyr_4258 at 5074.746 kb on - strand, within Psyr_4258 at 5074.746 kb on - strand, within Psyr_4258 at 5074.746 kb on - strand, within Psyr_4258 at 5074.746 kb on - strand, within Psyr_4258 at 5074.762 kb on + strand, within Psyr_4258 at 5074.763 kb on - strand, within Psyr_4258 at 5074.788 kb on - strand, within Psyr_4258 at 5075.002 kb on + strand at 5075.035 kb on + strand at 5075.036 kb on - strand at 5075.100 kb on + strand at 5075.100 kb on + strand at 5075.100 kb on + strand at 5075.100 kb on + strand at 5075.100 kb on + strand at 5075.101 kb on - strand at 5075.381 kb on + strand at 5075.382 kb on - strand at 5075.382 kb on - strand at 5075.382 kb on - strand at 5075.388 kb on + strand at 5075.388 kb on + strand at 5075.389 kb on - strand at 5075.389 kb on - strand at 5075.389 kb on - strand at 5075.389 kb on - strand at 5075.389 kb on - strand at 5075.389 kb on - strand at 5075.389 kb on - strand at 5075.421 kb on - strand at 5075.674 kb on - strand, within Psyr_4259 at 5075.674 kb on - strand, within Psyr_4259 at 5075.679 kb on + strand, within Psyr_4259 at 5075.680 kb on - strand, within Psyr_4259 at 5075.680 kb on - strand, within Psyr_4259 at 5075.698 kb on + strand, within Psyr_4259 at 5075.748 kb on + strand, within Psyr_4259 at 5075.748 kb on + strand, within Psyr_4259
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nalidixic 12.5 ug/ml remove 5,073,757 - Psyr_4256 0.33 +0.5 5,073,773 + Psyr_4256 0.38 +1.5 5,073,773 + Psyr_4256 0.38 +0.8 5,073,774 - Psyr_4256 0.38 -2.0 5,073,882 + Psyr_4256 0.73 -0.8 5,073,882 + Psyr_4256 0.73 +0.3 5,073,882 + Psyr_4256 0.73 -0.2 5,073,882 + Psyr_4256 0.73 +0.3 5,073,882 + Psyr_4256 0.73 +0.1 5,073,882 + Psyr_4256 0.73 +0.4 5,073,882 + Psyr_4256 0.73 -0.3 5,073,883 - Psyr_4256 0.73 +0.5 5,073,883 - Psyr_4256 0.73 +0.9 5,073,883 - Psyr_4256 0.73 -0.6 5,073,883 - Psyr_4256 0.73 -0.8 5,073,958 - -1.5 5,073,958 - +0.8 5,074,011 + -0.1 5,074,012 - +0.7 5,074,012 - +1.4 5,074,099 - +0.2 5,074,146 + Psyr_4257 0.15 -0.5 5,074,146 + Psyr_4257 0.15 -1.8 5,074,146 + Psyr_4257 0.15 -0.5 5,074,146 + Psyr_4257 0.15 -0.4 5,074,147 - Psyr_4257 0.15 -2.2 5,074,147 - Psyr_4257 0.15 +0.8 5,074,147 - Psyr_4257 0.15 +0.3 5,074,147 - Psyr_4257 0.15 -0.1 5,074,159 - Psyr_4257 0.18 -1.9 5,074,503 + Psyr_4257 0.88 +1.0 5,074,503 + Psyr_4257 0.88 -0.2 5,074,504 - Psyr_4257 0.88 +1.0 5,074,504 - Psyr_4257 0.88 +0.5 5,074,504 - Psyr_4257 0.88 +0.3 5,074,533 + +0.4 5,074,533 + -1.4 5,074,533 + -0.4 5,074,533 + +1.4 5,074,533 + -0.4 5,074,533 + -0.8 5,074,533 + -0.3 5,074,533 + +0.8 5,074,533 + -1.0 5,074,533 + -0.4 5,074,533 + +0.8 5,074,533 + -1.3 5,074,533 + -1.8 5,074,533 + +0.1 5,074,533 + +0.2 5,074,533 + -0.1 5,074,533 + -1.0 5,074,533 + +0.4 5,074,533 + +0.7 5,074,534 - +0.4 5,074,534 - -1.9 5,074,534 - -0.8 5,074,534 - -0.7 5,074,534 - +1.2 5,074,534 - -0.3 5,074,534 - -0.7 5,074,534 - -0.2 5,074,534 - -1.0 5,074,534 - -0.2 5,074,534 - +0.1 5,074,534 - -0.9 5,074,534 - -1.1 5,074,581 + +1.2 5,074,581 + -0.2 5,074,581 + -1.2 5,074,582 - +1.2 5,074,597 + +0.2 5,074,597 + -0.5 5,074,598 - -2.2 5,074,598 - +1.2 5,074,598 - +0.4 5,074,599 + +1.1 5,074,599 + -1.6 5,074,599 + -0.1 5,074,600 - -0.4 5,074,600 - -0.4 5,074,600 - +0.0 5,074,600 - -0.3 5,074,654 + -0.7 5,074,683 + +0.6 5,074,745 + Psyr_4258 0.19 -0.4 5,074,745 + Psyr_4258 0.19 -0.2 5,074,745 + Psyr_4258 0.19 +1.8 5,074,745 + Psyr_4258 0.19 -0.6 5,074,745 + Psyr_4258 0.19 -2.4 5,074,745 + Psyr_4258 0.19 +0.3 5,074,745 + Psyr_4258 0.19 +0.8 5,074,745 + Psyr_4258 0.19 +0.3 5,074,745 + Psyr_4258 0.19 -1.6 5,074,746 - Psyr_4258 0.19 -0.7 5,074,746 - Psyr_4258 0.19 -1.2 5,074,746 - Psyr_4258 0.19 -1.5 5,074,746 - Psyr_4258 0.19 -2.0 5,074,746 - Psyr_4258 0.19 -1.2 5,074,746 - Psyr_4258 0.19 -1.5 5,074,746 - Psyr_4258 0.19 -1.2 5,074,746 - Psyr_4258 0.19 +0.2 5,074,746 - Psyr_4258 0.19 -0.9 5,074,746 - Psyr_4258 0.19 -0.2 5,074,762 + Psyr_4258 0.24 -0.7 5,074,763 - Psyr_4258 0.25 -2.2 5,074,788 - Psyr_4258 0.32 +0.7 5,075,002 + -0.1 5,075,035 + +0.7 5,075,036 - -0.7 5,075,100 + +0.3 5,075,100 + +0.4 5,075,100 + -0.6 5,075,100 + -0.0 5,075,100 + -0.4 5,075,101 - -0.5 5,075,381 + +1.4 5,075,382 - +0.6 5,075,382 - +1.2 5,075,382 - -0.6 5,075,388 + -0.2 5,075,388 + +1.0 5,075,389 - +1.1 5,075,389 - -0.9 5,075,389 - -0.1 5,075,389 - +1.2 5,075,389 - -0.6 5,075,389 - +0.2 5,075,389 - +0.9 5,075,421 - +0.8 5,075,674 - Psyr_4259 0.20 +1.5 5,075,674 - Psyr_4259 0.20 +0.9 5,075,679 + Psyr_4259 0.20 +0.9 5,075,680 - Psyr_4259 0.21 -0.5 5,075,680 - Psyr_4259 0.21 +0.4 5,075,698 + Psyr_4259 0.21 -1.1 5,075,748 + Psyr_4259 0.23 +1.2 5,075,748 + Psyr_4259 0.23 +0.2
Or see this region's nucleotide sequence