Experiment: KB with Nalidixic 12.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4240 and Psyr_4241 are separated by 10 nucleotides Psyr_4241 and Psyr_4242 overlap by 1 nucleotides Psyr_4242 and Psyr_4243 are separated by 135 nucleotides
Psyr_4240: Psyr_4240 - Binding-protein-dependent transport systems inner membrane component, at 5,052,641 to 5,053,552
_4240
Psyr_4241: Psyr_4241 - Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal, at 5,053,563 to 5,054,531
_4241
Psyr_4242: Psyr_4242 - Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal, at 5,054,531 to 5,055,505
_4242
Psyr_4243: Psyr_4243 - Oxidoreductase FAD/NAD(P)-binding:PepSY-associated TM helix:Flavodoxin/nitric oxide synthase, at 5,055,641 to 5,058,163
_4243
Position (kb) 5054
5055
5056 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5053.618 kb on + strand at 5053.663 kb on + strand, within Psyr_4241 at 5053.663 kb on + strand, within Psyr_4241 at 5053.664 kb on - strand, within Psyr_4241 at 5053.875 kb on + strand, within Psyr_4241 at 5053.875 kb on + strand, within Psyr_4241 at 5053.875 kb on + strand, within Psyr_4241 at 5053.876 kb on - strand, within Psyr_4241 at 5053.876 kb on - strand, within Psyr_4241 at 5053.876 kb on - strand, within Psyr_4241 at 5053.876 kb on - strand, within Psyr_4241 at 5053.876 kb on - strand, within Psyr_4241 at 5053.876 kb on - strand, within Psyr_4241 at 5053.876 kb on - strand, within Psyr_4241 at 5053.876 kb on - strand, within Psyr_4241 at 5053.876 kb on - strand, within Psyr_4241 at 5053.878 kb on - strand, within Psyr_4241 at 5054.007 kb on + strand, within Psyr_4241 at 5054.008 kb on - strand, within Psyr_4241 at 5054.241 kb on + strand, within Psyr_4241 at 5054.241 kb on + strand, within Psyr_4241 at 5054.241 kb on + strand, within Psyr_4241 at 5054.241 kb on + strand, within Psyr_4241 at 5054.241 kb on + strand, within Psyr_4241 at 5054.242 kb on - strand, within Psyr_4241 at 5054.242 kb on - strand, within Psyr_4241 at 5054.434 kb on - strand, within Psyr_4241 at 5054.438 kb on - strand at 5054.438 kb on - strand at 5054.438 kb on - strand at 5054.438 kb on - strand at 5054.505 kb on + strand at 5054.505 kb on + strand at 5054.505 kb on + strand at 5054.506 kb on - strand at 5054.506 kb on - strand at 5054.529 kb on + strand at 5054.529 kb on + strand at 5054.969 kb on + strand, within Psyr_4242 at 5054.970 kb on - strand, within Psyr_4242 at 5055.013 kb on + strand, within Psyr_4242 at 5055.105 kb on + strand, within Psyr_4242 at 5055.106 kb on - strand, within Psyr_4242 at 5055.150 kb on - strand, within Psyr_4242 at 5055.150 kb on - strand, within Psyr_4242 at 5055.150 kb on - strand, within Psyr_4242 at 5055.150 kb on - strand, within Psyr_4242 at 5055.150 kb on - strand, within Psyr_4242 at 5055.150 kb on - strand, within Psyr_4242 at 5055.150 kb on - strand, within Psyr_4242 at 5055.212 kb on + strand, within Psyr_4242 at 5055.212 kb on + strand, within Psyr_4242 at 5055.212 kb on + strand, within Psyr_4242 at 5055.212 kb on + strand, within Psyr_4242 at 5055.212 kb on + strand, within Psyr_4242 at 5055.212 kb on + strand, within Psyr_4242 at 5055.212 kb on + strand, within Psyr_4242 at 5055.212 kb on + strand, within Psyr_4242 at 5055.212 kb on + strand, within Psyr_4242 at 5055.213 kb on - strand, within Psyr_4242 at 5055.213 kb on - strand, within Psyr_4242 at 5055.213 kb on - strand, within Psyr_4242 at 5055.213 kb on - strand, within Psyr_4242 at 5055.213 kb on - strand, within Psyr_4242 at 5055.213 kb on - strand, within Psyr_4242 at 5055.254 kb on + strand, within Psyr_4242 at 5055.254 kb on + strand, within Psyr_4242 at 5055.254 kb on + strand, within Psyr_4242 at 5055.254 kb on + strand, within Psyr_4242 at 5055.254 kb on + strand, within Psyr_4242 at 5055.255 kb on - strand, within Psyr_4242 at 5055.255 kb on - strand, within Psyr_4242 at 5055.255 kb on - strand, within Psyr_4242 at 5055.255 kb on - strand, within Psyr_4242 at 5055.255 kb on - strand, within Psyr_4242 at 5055.255 kb on - strand, within Psyr_4242 at 5055.255 kb on - strand, within Psyr_4242 at 5055.480 kb on - strand at 5055.515 kb on - strand at 5055.515 kb on - strand at 5055.515 kb on - strand at 5055.515 kb on - strand at 5055.515 kb on - strand at 5055.515 kb on - strand at 5055.522 kb on - strand at 5055.522 kb on - strand at 5055.522 kb on - strand at 5055.522 kb on - strand at 5055.528 kb on + strand at 5055.528 kb on + strand at 5055.529 kb on - strand at 5055.535 kb on + strand at 5055.535 kb on + strand at 5055.535 kb on + strand at 5055.535 kb on + strand at 5055.535 kb on + strand at 5055.536 kb on - strand at 5055.536 kb on - strand at 5055.536 kb on - strand at 5055.542 kb on + strand at 5055.542 kb on + strand at 5055.542 kb on + strand at 5055.542 kb on + strand at 5055.542 kb on + strand at 5055.542 kb on + strand at 5055.543 kb on - strand at 5055.543 kb on - strand at 5055.549 kb on + strand at 5055.549 kb on + strand at 5055.550 kb on - strand at 5055.550 kb on - strand at 5055.550 kb on - strand at 5055.556 kb on + strand at 5055.556 kb on + strand at 5055.556 kb on + strand at 5055.556 kb on + strand at 5055.556 kb on + strand at 5055.556 kb on + strand at 5055.556 kb on + strand at 5055.556 kb on + strand at 5055.563 kb on + strand at 5055.563 kb on + strand at 5055.563 kb on + strand at 5055.570 kb on + strand at 5055.570 kb on + strand at 5055.570 kb on + strand at 5055.579 kb on - strand at 5055.645 kb on + strand at 5055.645 kb on + strand at 5055.645 kb on + strand at 5055.762 kb on + strand at 5055.762 kb on + strand at 5055.762 kb on + strand at 5055.762 kb on + strand at 5055.762 kb on + strand at 5055.762 kb on + strand at 5055.762 kb on + strand at 5055.763 kb on - strand at 5055.763 kb on - strand at 5055.763 kb on - strand at 5055.763 kb on - strand at 5055.788 kb on + strand at 5055.788 kb on + strand at 5055.788 kb on + strand at 5055.788 kb on + strand at 5055.831 kb on + strand at 5055.831 kb on + strand at 5055.831 kb on + strand at 5055.831 kb on + strand at 5055.832 kb on - strand at 5055.832 kb on - strand at 5055.832 kb on - strand at 5055.832 kb on - strand at 5055.832 kb on - strand at 5055.832 kb on - strand at 5056.471 kb on + strand, within Psyr_4243 at 5056.471 kb on + strand, within Psyr_4243 at 5056.472 kb on - strand, within Psyr_4243 at 5056.494 kb on + strand, within Psyr_4243 at 5056.494 kb on + strand, within Psyr_4243 at 5056.494 kb on + strand, within Psyr_4243 at 5056.494 kb on + strand, within Psyr_4243 at 5056.494 kb on + strand, within Psyr_4243 at 5056.494 kb on + strand, within Psyr_4243 at 5056.495 kb on - strand, within Psyr_4243 at 5056.495 kb on - strand, within Psyr_4243
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nalidixic 12.5 ug/ml remove 5,053,618 + -0.0 5,053,663 + Psyr_4241 0.10 -0.0 5,053,663 + Psyr_4241 0.10 -0.8 5,053,664 - Psyr_4241 0.10 -1.2 5,053,875 + Psyr_4241 0.32 +0.7 5,053,875 + Psyr_4241 0.32 +0.5 5,053,875 + Psyr_4241 0.32 -0.8 5,053,876 - Psyr_4241 0.32 -0.1 5,053,876 - Psyr_4241 0.32 -2.5 5,053,876 - Psyr_4241 0.32 +0.7 5,053,876 - Psyr_4241 0.32 -0.2 5,053,876 - Psyr_4241 0.32 -0.4 5,053,876 - Psyr_4241 0.32 -1.5 5,053,876 - Psyr_4241 0.32 +1.2 5,053,876 - Psyr_4241 0.32 -0.2 5,053,876 - Psyr_4241 0.32 -0.1 5,053,878 - Psyr_4241 0.33 -0.1 5,054,007 + Psyr_4241 0.46 -0.1 5,054,008 - Psyr_4241 0.46 +0.6 5,054,241 + Psyr_4241 0.70 +0.8 5,054,241 + Psyr_4241 0.70 -0.6 5,054,241 + Psyr_4241 0.70 -0.6 5,054,241 + Psyr_4241 0.70 -0.6 5,054,241 + Psyr_4241 0.70 -0.2 5,054,242 - Psyr_4241 0.70 -1.5 5,054,242 - Psyr_4241 0.70 +0.3 5,054,434 - Psyr_4241 0.90 -0.9 5,054,438 - -0.5 5,054,438 - -0.5 5,054,438 - -1.9 5,054,438 - -0.3 5,054,505 + -0.2 5,054,505 + -0.3 5,054,505 + +0.1 5,054,506 - -0.3 5,054,506 - -0.2 5,054,529 + +1.0 5,054,529 + -0.6 5,054,969 + Psyr_4242 0.45 -1.2 5,054,970 - Psyr_4242 0.45 +0.1 5,055,013 + Psyr_4242 0.49 +0.2 5,055,105 + Psyr_4242 0.59 +0.8 5,055,106 - Psyr_4242 0.59 -1.2 5,055,150 - Psyr_4242 0.63 -0.9 5,055,150 - Psyr_4242 0.63 +0.7 5,055,150 - Psyr_4242 0.63 +0.5 5,055,150 - Psyr_4242 0.63 -0.1 5,055,150 - Psyr_4242 0.63 -0.2 5,055,150 - Psyr_4242 0.63 +1.6 5,055,150 - Psyr_4242 0.63 -0.2 5,055,212 + Psyr_4242 0.70 +0.8 5,055,212 + Psyr_4242 0.70 -0.9 5,055,212 + Psyr_4242 0.70 +0.3 5,055,212 + Psyr_4242 0.70 -0.8 5,055,212 + Psyr_4242 0.70 +0.6 5,055,212 + Psyr_4242 0.70 +0.0 5,055,212 + Psyr_4242 0.70 +0.8 5,055,212 + Psyr_4242 0.70 +0.8 5,055,212 + Psyr_4242 0.70 -0.6 5,055,213 - Psyr_4242 0.70 +0.4 5,055,213 - Psyr_4242 0.70 +1.8 5,055,213 - Psyr_4242 0.70 +1.8 5,055,213 - Psyr_4242 0.70 -1.2 5,055,213 - Psyr_4242 0.70 -1.8 5,055,213 - Psyr_4242 0.70 +1.2 5,055,254 + Psyr_4242 0.74 -0.7 5,055,254 + Psyr_4242 0.74 +1.0 5,055,254 + Psyr_4242 0.74 +1.5 5,055,254 + Psyr_4242 0.74 -0.2 5,055,254 + Psyr_4242 0.74 -1.5 5,055,255 - Psyr_4242 0.74 -0.4 5,055,255 - Psyr_4242 0.74 +1.1 5,055,255 - Psyr_4242 0.74 +1.6 5,055,255 - Psyr_4242 0.74 +0.2 5,055,255 - Psyr_4242 0.74 +1.2 5,055,255 - Psyr_4242 0.74 -0.3 5,055,255 - Psyr_4242 0.74 +0.6 5,055,480 - +0.8 5,055,515 - +0.2 5,055,515 - -0.5 5,055,515 - +0.1 5,055,515 - +0.5 5,055,515 - +0.8 5,055,515 - +1.6 5,055,522 - +0.1 5,055,522 - -0.8 5,055,522 - -0.9 5,055,522 - +0.1 5,055,528 + -0.3 5,055,528 + -0.4 5,055,529 - -2.2 5,055,535 + -0.7 5,055,535 + +0.2 5,055,535 + -0.9 5,055,535 + +0.1 5,055,535 + -1.3 5,055,536 - -0.5 5,055,536 - +0.2 5,055,536 - +1.6 5,055,542 + -0.1 5,055,542 + +0.6 5,055,542 + -0.7 5,055,542 + +0.1 5,055,542 + -0.8 5,055,542 + -0.7 5,055,543 - -1.2 5,055,543 - +0.2 5,055,549 + -1.6 5,055,549 + -0.5 5,055,550 - -0.2 5,055,550 - +0.7 5,055,550 - +0.2 5,055,556 + +0.2 5,055,556 + +1.4 5,055,556 + -0.6 5,055,556 + -1.6 5,055,556 + -1.1 5,055,556 + -0.2 5,055,556 + +0.9 5,055,556 + -1.4 5,055,563 + -0.2 5,055,563 + +0.5 5,055,563 + +1.3 5,055,570 + -0.9 5,055,570 + +0.3 5,055,570 + +2.0 5,055,579 - +1.0 5,055,645 + +1.1 5,055,645 + +0.5 5,055,645 + -2.4 5,055,762 + +0.8 5,055,762 + +0.8 5,055,762 + +0.8 5,055,762 + -0.3 5,055,762 + +0.3 5,055,762 + +1.3 5,055,762 + +0.8 5,055,763 - +0.4 5,055,763 - -0.9 5,055,763 - -0.9 5,055,763 - -0.2 5,055,788 + -0.9 5,055,788 + +0.8 5,055,788 + -2.2 5,055,788 + +0.2 5,055,831 + +0.1 5,055,831 + -1.5 5,055,831 + +0.8 5,055,831 + +0.5 5,055,832 - -1.2 5,055,832 - -0.3 5,055,832 - -1.2 5,055,832 - +0.6 5,055,832 - +0.8 5,055,832 - -1.3 5,056,471 + Psyr_4243 0.33 -0.8 5,056,471 + Psyr_4243 0.33 -0.2 5,056,472 - Psyr_4243 0.33 -0.5 5,056,494 + Psyr_4243 0.34 -0.9 5,056,494 + Psyr_4243 0.34 -0.1 5,056,494 + Psyr_4243 0.34 -1.1 5,056,494 + Psyr_4243 0.34 +0.5 5,056,494 + Psyr_4243 0.34 -2.1 5,056,494 + Psyr_4243 0.34 -2.6 5,056,495 - Psyr_4243 0.34 +1.4 5,056,495 - Psyr_4243 0.34 +0.9
Or see this region's nucleotide sequence