Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4156

Experiment: KB with Nalidixic 12.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4154 and Psyr_4155 are separated by 107 nucleotidesPsyr_4155 and Psyr_4156 are separated by 48 nucleotidesPsyr_4156 and Psyr_4157 are separated by 2 nucleotidesPsyr_4157 and Psyr_4158 are separated by 48 nucleotides Psyr_4154: Psyr_4154 - microcin-processing peptidase 1, Unknown type peptidase, MEROPS family U62, at 4,940,327 to 4,941,673 _4154 Psyr_4155: Psyr_4155 - Protein of unknown function DUF615, at 4,941,781 to 4,942,302 _4155 Psyr_4156: Psyr_4156 - microcin-processing peptidase 2, Unknown type peptidase, MEROPS family U62, at 4,942,351 to 4,943,790 _4156 Psyr_4157: Psyr_4157 - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase, at 4,943,793 to 4,944,638 _4157 Psyr_4158: Psyr_4158 - conserved hypothetical protein, at 4,944,687 to 4,948,502 _4158 Position (kb) 4942 4943 4944Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4941.468 kb on + strand, within Psyr_4154at 4941.468 kb on + strand, within Psyr_4154at 4941.468 kb on + strand, within Psyr_4154at 4941.469 kb on - strand, within Psyr_4154at 4941.469 kb on - strand, within Psyr_4154at 4941.469 kb on - strand, within Psyr_4154at 4941.469 kb on - strand, within Psyr_4154at 4941.469 kb on - strand, within Psyr_4154at 4941.469 kb on - strand, within Psyr_4154at 4941.469 kb on - strand, within Psyr_4154at 4941.469 kb on - strand, within Psyr_4154at 4941.469 kb on - strand, within Psyr_4154at 4942.072 kb on + strand, within Psyr_4155at 4942.073 kb on - strand, within Psyr_4155at 4942.073 kb on - strand, within Psyr_4155at 4942.261 kb on + strandat 4942.261 kb on + strandat 4942.261 kb on + strandat 4942.261 kb on + strandat 4942.261 kb on + strandat 4942.261 kb on + strandat 4942.261 kb on + strandat 4942.262 kb on - strandat 4942.262 kb on - strandat 4942.395 kb on + strandat 4942.396 kb on - strandat 4942.396 kb on - strandat 4942.396 kb on - strandat 4942.396 kb on - strandat 4942.568 kb on + strand, within Psyr_4156at 4942.569 kb on - strand, within Psyr_4156at 4942.569 kb on - strand, within Psyr_4156at 4942.640 kb on + strand, within Psyr_4156at 4942.640 kb on + strand, within Psyr_4156at 4942.640 kb on + strand, within Psyr_4156at 4942.640 kb on + strand, within Psyr_4156at 4942.640 kb on + strand, within Psyr_4156at 4942.640 kb on + strand, within Psyr_4156at 4942.640 kb on + strand, within Psyr_4156at 4942.640 kb on + strand, within Psyr_4156at 4942.641 kb on - strand, within Psyr_4156at 4942.641 kb on - strand, within Psyr_4156at 4942.641 kb on - strand, within Psyr_4156at 4942.641 kb on - strand, within Psyr_4156at 4942.700 kb on + strand, within Psyr_4156at 4942.700 kb on + strand, within Psyr_4156at 4942.700 kb on + strand, within Psyr_4156at 4942.700 kb on + strand, within Psyr_4156at 4942.700 kb on + strand, within Psyr_4156at 4942.700 kb on + strand, within Psyr_4156at 4942.700 kb on + strand, within Psyr_4156at 4942.700 kb on + strand, within Psyr_4156at 4942.700 kb on + strand, within Psyr_4156at 4942.700 kb on + strand, within Psyr_4156at 4942.700 kb on + strand, within Psyr_4156at 4942.700 kb on + strand, within Psyr_4156at 4942.700 kb on + strand, within Psyr_4156at 4942.700 kb on + strand, within Psyr_4156at 4942.701 kb on - strand, within Psyr_4156at 4942.701 kb on - strand, within Psyr_4156at 4942.701 kb on - strand, within Psyr_4156at 4942.701 kb on - strand, within Psyr_4156at 4942.701 kb on - strand, within Psyr_4156at 4942.701 kb on - strand, within Psyr_4156at 4942.701 kb on - strand, within Psyr_4156at 4942.701 kb on - strand, within Psyr_4156at 4942.701 kb on - strand, within Psyr_4156at 4942.701 kb on - strand, within Psyr_4156at 4942.701 kb on - strand, within Psyr_4156at 4942.701 kb on - strand, within Psyr_4156at 4942.736 kb on + strand, within Psyr_4156at 4942.736 kb on + strand, within Psyr_4156at 4942.736 kb on + strand, within Psyr_4156at 4942.737 kb on - strand, within Psyr_4156at 4942.805 kb on + strand, within Psyr_4156at 4942.805 kb on + strand, within Psyr_4156at 4942.806 kb on - strand, within Psyr_4156at 4942.817 kb on - strand, within Psyr_4156at 4942.836 kb on + strand, within Psyr_4156at 4942.836 kb on + strand, within Psyr_4156at 4942.837 kb on - strand, within Psyr_4156at 4943.154 kb on - strand, within Psyr_4156at 4943.160 kb on - strand, within Psyr_4156at 4943.405 kb on - strand, within Psyr_4156at 4943.429 kb on + strand, within Psyr_4156at 4943.429 kb on + strand, within Psyr_4156at 4943.429 kb on + strand, within Psyr_4156at 4943.429 kb on + strand, within Psyr_4156at 4943.429 kb on + strand, within Psyr_4156at 4943.429 kb on + strand, within Psyr_4156at 4943.429 kb on + strand, within Psyr_4156at 4943.430 kb on - strand, within Psyr_4156at 4943.430 kb on - strand, within Psyr_4156at 4943.430 kb on - strand, within Psyr_4156at 4943.493 kb on + strand, within Psyr_4156at 4943.494 kb on - strand, within Psyr_4156at 4943.672 kb on + strandat 4943.672 kb on + strandat 4943.672 kb on + strandat 4943.673 kb on - strandat 4943.790 kb on + strandat 4943.790 kb on + strandat 4943.790 kb on + strandat 4943.790 kb on + strandat 4943.790 kb on + strandat 4943.790 kb on + strandat 4943.791 kb on - strandat 4943.791 kb on - strandat 4944.022 kb on + strand, within Psyr_4157at 4944.022 kb on + strand, within Psyr_4157at 4944.022 kb on + strand, within Psyr_4157at 4944.022 kb on + strand, within Psyr_4157at 4944.022 kb on + strand, within Psyr_4157at 4944.023 kb on - strand, within Psyr_4157at 4944.023 kb on - strand, within Psyr_4157at 4944.023 kb on - strand, within Psyr_4157at 4944.023 kb on - strand, within Psyr_4157at 4944.142 kb on + strand, within Psyr_4157at 4944.143 kb on - strand, within Psyr_4157at 4944.143 kb on - strand, within Psyr_4157at 4944.167 kb on - strand, within Psyr_4157at 4944.232 kb on + strand, within Psyr_4157at 4944.232 kb on + strand, within Psyr_4157at 4944.232 kb on + strand, within Psyr_4157at 4944.232 kb on + strand, within Psyr_4157at 4944.232 kb on + strand, within Psyr_4157at 4944.233 kb on - strand, within Psyr_4157at 4944.233 kb on - strand, within Psyr_4157at 4944.233 kb on - strand, within Psyr_4157at 4944.233 kb on - strand, within Psyr_4157at 4944.233 kb on - strand, within Psyr_4157at 4944.233 kb on - strand, within Psyr_4157at 4944.409 kb on - strand, within Psyr_4157at 4944.673 kb on + strandat 4944.673 kb on + strandat 4944.674 kb on - strandat 4944.674 kb on - strandat 4944.674 kb on - strandat 4944.674 kb on - strandat 4944.674 kb on - strandat 4944.754 kb on + strandat 4944.754 kb on + strandat 4944.754 kb on + strandat 4944.754 kb on + strandat 4944.754 kb on + strandat 4944.755 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nalidixic 12.5 ug/ml
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4,941,468 + Psyr_4154 0.85 +0.4
4,941,468 + Psyr_4154 0.85 -1.2
4,941,468 + Psyr_4154 0.85 -1.6
4,941,469 - Psyr_4154 0.85 +0.3
4,941,469 - Psyr_4154 0.85 +0.5
4,941,469 - Psyr_4154 0.85 +0.1
4,941,469 - Psyr_4154 0.85 -2.2
4,941,469 - Psyr_4154 0.85 -0.1
4,941,469 - Psyr_4154 0.85 +0.8
4,941,469 - Psyr_4154 0.85 +1.4
4,941,469 - Psyr_4154 0.85 +0.8
4,941,469 - Psyr_4154 0.85 +1.2
4,942,072 + Psyr_4155 0.56 +0.5
4,942,073 - Psyr_4155 0.56 -1.2
4,942,073 - Psyr_4155 0.56 -0.8
4,942,261 + +0.7
4,942,261 + -1.0
4,942,261 + +0.7
4,942,261 + +1.2
4,942,261 + +0.2
4,942,261 + -0.4
4,942,261 + +0.7
4,942,262 - -0.4
4,942,262 - -2.0
4,942,395 + -0.5
4,942,396 - +0.8
4,942,396 - +0.4
4,942,396 - -0.2
4,942,396 - -0.0
4,942,568 + Psyr_4156 0.15 -1.7
4,942,569 - Psyr_4156 0.15 +2.2
4,942,569 - Psyr_4156 0.15 +0.1
4,942,640 + Psyr_4156 0.20 -1.0
4,942,640 + Psyr_4156 0.20 -0.3
4,942,640 + Psyr_4156 0.20 +0.4
4,942,640 + Psyr_4156 0.20 -2.2
4,942,640 + Psyr_4156 0.20 +1.4
4,942,640 + Psyr_4156 0.20 +1.1
4,942,640 + Psyr_4156 0.20 +0.3
4,942,640 + Psyr_4156 0.20 +0.5
4,942,641 - Psyr_4156 0.20 +0.3
4,942,641 - Psyr_4156 0.20 +0.4
4,942,641 - Psyr_4156 0.20 -1.5
4,942,641 - Psyr_4156 0.20 -0.5
4,942,700 + Psyr_4156 0.24 +0.4
4,942,700 + Psyr_4156 0.24 -0.7
4,942,700 + Psyr_4156 0.24 -0.6
4,942,700 + Psyr_4156 0.24 +0.8
4,942,700 + Psyr_4156 0.24 +0.5
4,942,700 + Psyr_4156 0.24 -2.3
4,942,700 + Psyr_4156 0.24 -1.3
4,942,700 + Psyr_4156 0.24 +0.0
4,942,700 + Psyr_4156 0.24 -1.7
4,942,700 + Psyr_4156 0.24 +1.1
4,942,700 + Psyr_4156 0.24 -0.3
4,942,700 + Psyr_4156 0.24 -0.3
4,942,700 + Psyr_4156 0.24 +3.2
4,942,700 + Psyr_4156 0.24 -0.5
4,942,701 - Psyr_4156 0.24 +0.5
4,942,701 - Psyr_4156 0.24 -0.2
4,942,701 - Psyr_4156 0.24 -0.1
4,942,701 - Psyr_4156 0.24 +0.4
4,942,701 - Psyr_4156 0.24 -0.6
4,942,701 - Psyr_4156 0.24 +0.3
4,942,701 - Psyr_4156 0.24 +0.1
4,942,701 - Psyr_4156 0.24 -0.2
4,942,701 - Psyr_4156 0.24 -1.5
4,942,701 - Psyr_4156 0.24 +0.9
4,942,701 - Psyr_4156 0.24 -0.0
4,942,701 - Psyr_4156 0.24 -0.7
4,942,736 + Psyr_4156 0.27 +0.0
4,942,736 + Psyr_4156 0.27 +0.7
4,942,736 + Psyr_4156 0.27 +0.2
4,942,737 - Psyr_4156 0.27 -0.5
4,942,805 + Psyr_4156 0.32 -1.1
4,942,805 + Psyr_4156 0.32 +0.5
4,942,806 - Psyr_4156 0.32 +0.8
4,942,817 - Psyr_4156 0.32 +0.5
4,942,836 + Psyr_4156 0.34 +0.7
4,942,836 + Psyr_4156 0.34 -0.2
4,942,837 - Psyr_4156 0.34 +0.9
4,943,154 - Psyr_4156 0.56 +1.3
4,943,160 - Psyr_4156 0.56 +0.0
4,943,405 - Psyr_4156 0.73 -0.2
4,943,429 + Psyr_4156 0.75 -0.6
4,943,429 + Psyr_4156 0.75 -0.6
4,943,429 + Psyr_4156 0.75 -0.2
4,943,429 + Psyr_4156 0.75 +0.0
4,943,429 + Psyr_4156 0.75 +0.1
4,943,429 + Psyr_4156 0.75 +0.4
4,943,429 + Psyr_4156 0.75 +0.8
4,943,430 - Psyr_4156 0.75 +0.6
4,943,430 - Psyr_4156 0.75 +1.8
4,943,430 - Psyr_4156 0.75 +0.8
4,943,493 + Psyr_4156 0.79 -0.0
4,943,494 - Psyr_4156 0.79 +1.0
4,943,672 + -0.4
4,943,672 + +1.4
4,943,672 + -0.1
4,943,673 - +0.8
4,943,790 + -0.2
4,943,790 + -2.0
4,943,790 + +0.4
4,943,790 + +0.8
4,943,790 + +0.4
4,943,790 + +0.8
4,943,791 - +0.3
4,943,791 - +0.1
4,944,022 + Psyr_4157 0.27 -1.0
4,944,022 + Psyr_4157 0.27 -0.5
4,944,022 + Psyr_4157 0.27 +0.3
4,944,022 + Psyr_4157 0.27 +0.1
4,944,022 + Psyr_4157 0.27 +0.2
4,944,023 - Psyr_4157 0.27 -0.5
4,944,023 - Psyr_4157 0.27 -2.2
4,944,023 - Psyr_4157 0.27 -2.0
4,944,023 - Psyr_4157 0.27 -0.2
4,944,142 + Psyr_4157 0.41 -0.2
4,944,143 - Psyr_4157 0.41 -0.2
4,944,143 - Psyr_4157 0.41 -1.9
4,944,167 - Psyr_4157 0.44 +0.1
4,944,232 + Psyr_4157 0.52 -0.4
4,944,232 + Psyr_4157 0.52 +4.3
4,944,232 + Psyr_4157 0.52 -0.1
4,944,232 + Psyr_4157 0.52 -0.2
4,944,232 + Psyr_4157 0.52 -0.2
4,944,233 - Psyr_4157 0.52 +0.4
4,944,233 - Psyr_4157 0.52 +1.6
4,944,233 - Psyr_4157 0.52 +0.6
4,944,233 - Psyr_4157 0.52 -1.4
4,944,233 - Psyr_4157 0.52 -0.4
4,944,233 - Psyr_4157 0.52 -0.4
4,944,409 - Psyr_4157 0.73 +0.3
4,944,673 + +1.5
4,944,673 + -0.0
4,944,674 - +1.8
4,944,674 - -1.2
4,944,674 - -0.8
4,944,674 - -0.2
4,944,674 - -0.3
4,944,754 + -2.2
4,944,754 + +0.8
4,944,754 + -0.4
4,944,754 + -0.2
4,944,754 + +0.8
4,944,755 - -2.3

Or see this region's nucleotide sequence