Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4139

Experiment: KB with Nalidixic 12.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Nalidixic 12.5 ug/ml
4,927,741	-		Psyr_4137	0.14	-1.7
4,928,214	+		Psyr_4138	0.33	-1.5
4,928,331	+		Psyr_4138	0.51	-1.7
4,928,332	-		Psyr_4138	0.51	-0.7
4,928,404	-		Psyr_4138	0.62	-2.2
4,928,404	-		Psyr_4138	0.62	-3.1
4,928,404	-		Psyr_4138	0.62	-0.7
4,928,478	+		Psyr_4138	0.73	-0.7
4,928,479	-		Psyr_4138	0.74	-2.6
4,928,479	-		Psyr_4138	0.74	-3.0
4,928,479	-		Psyr_4138	0.74	-2.9
4,928,503	-		Psyr_4138	0.77	+1.4
4,928,503	-		Psyr_4138	0.77	-0.7
4,928,503	-		Psyr_4138	0.77	-1.3
4,928,618	+				-1.2
4,928,619	-				-2.0
4,928,642	-				-1.7
4,928,642	-				+1.4
4,928,679	-				-0.2
4,928,679	-				-1.2
4,928,685	-				-1.2
4,928,685	-				-0.5
4,928,744	+		Psyr_4139	0.18	-2.6
4,928,797	+		Psyr_4139	0.29	+0.8
4,928,797	+		Psyr_4139	0.29	+0.8
4,928,797	+		Psyr_4139	0.29	-2.0
4,928,797	+		Psyr_4139	0.29	-3.0
4,928,798	-		Psyr_4139	0.29	-3.4
4,928,798	-		Psyr_4139	0.29	+0.8
4,928,900	+		Psyr_4139	0.51	-1.7
4,928,955	+		Psyr_4139	0.63	+0.3
4,928,955	+		Psyr_4139	0.63	-0.2
4,928,955	+		Psyr_4139	0.63	-0.7
4,928,955	+		Psyr_4139	0.63	-0.9
4,928,956	-		Psyr_4139	0.63	-1.0
4,928,956	-		Psyr_4139	0.63	-1.2
4,928,995	+		Psyr_4139	0.71	-2.3
4,928,995	+		Psyr_4139	0.71	-1.7
4,928,995	+		Psyr_4139	0.71	-0.6
4,928,995	+		Psyr_4139	0.71	-2.2
4,928,996	-		Psyr_4139	0.72	-1.7
4,928,996	-		Psyr_4139	0.72	-1.2
4,929,001	+		Psyr_4139	0.73	-1.5
4,929,002	-		Psyr_4139	0.73	-2.2
4,929,008	+		Psyr_4139	0.74	-1.6
4,929,011	-		Psyr_4139	0.75	-0.7
4,929,011	-		Psyr_4139	0.75	-1.5
4,929,011	-		Psyr_4139	0.75	-1.5
4,929,290	+		Psyr_4140	0.20	-2.7
4,929,290	+		Psyr_4140	0.20	-2.9
4,929,290	+		Psyr_4140	0.20	-1.2
4,929,372	+		Psyr_4140	0.31	-1.1
4,929,489	+		Psyr_4140	0.45	-3.1
4,929,489	+		Psyr_4140	0.45	-2.0
4,929,863	-				-1.7
4,929,868	+				+0.1
4,929,869	-				-1.2
4,929,916	+				-1.7
4,929,916	+				-0.4
4,929,917	-				+0.3
4,929,940	+				-1.5
4,929,940	+				-0.7
4,929,940	+				-1.5
4,929,941	-				-3.8
4,929,941	-				+0.4
4,930,017	+		Psyr_4141	0.11	-3.1
4,930,017	+		Psyr_4141	0.11	-2.9
4,930,017	+		Psyr_4141	0.11	-2.5
4,930,017	+		Psyr_4141	0.11	-1.5
4,930,088	+		Psyr_4141	0.20	-2.5
4,930,088	+		Psyr_4141	0.20	+0.3
4,930,088	+		Psyr_4141	0.20	-0.2
4,930,088	+		Psyr_4141	0.20	-1.5
4,930,088	+		Psyr_4141	0.20	-3.1
4,930,088	+		Psyr_4141	0.20	-1.2
4,930,088	+		Psyr_4141	0.20	-1.7
4,930,089	-		Psyr_4141	0.20	-1.2
4,930,089	-		Psyr_4141	0.20	-2.3
4,930,089	-		Psyr_4141	0.20	-1.0