Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4122

Experiment: KB with Nalidixic 12.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4121 and Psyr_4122 are separated by 92 nucleotidesPsyr_4122 and Psyr_4123 are separated by 62 nucleotides Psyr_4121: Psyr_4121 - transcriptional regulator, AraC family with amidase-like domain protein, at 4,909,922 to 4,910,926 _4121 Psyr_4122: Psyr_4122 - AFG1-like ATPase, at 4,911,019 to 4,912,113 _4122 Psyr_4123: Psyr_4123 - tryptophanyl-tRNA synthetase, at 4,912,176 to 4,913,525 _4123 Position (kb) 4911 4912 4913Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4910.036 kb on + strand, within Psyr_4121at 4910.036 kb on + strand, within Psyr_4121at 4910.292 kb on - strand, within Psyr_4121at 4910.339 kb on + strand, within Psyr_4121at 4910.339 kb on + strand, within Psyr_4121at 4910.340 kb on - strand, within Psyr_4121at 4910.340 kb on - strand, within Psyr_4121at 4910.340 kb on - strand, within Psyr_4121at 4910.426 kb on + strand, within Psyr_4121at 4910.427 kb on - strand, within Psyr_4121at 4910.427 kb on - strand, within Psyr_4121at 4910.462 kb on + strand, within Psyr_4121at 4910.462 kb on + strand, within Psyr_4121at 4910.462 kb on + strand, within Psyr_4121at 4910.462 kb on + strand, within Psyr_4121at 4910.462 kb on + strand, within Psyr_4121at 4910.463 kb on - strand, within Psyr_4121at 4910.463 kb on - strand, within Psyr_4121at 4910.463 kb on - strand, within Psyr_4121at 4910.463 kb on - strand, within Psyr_4121at 4910.463 kb on - strand, within Psyr_4121at 4910.463 kb on - strand, within Psyr_4121at 4910.468 kb on + strand, within Psyr_4121at 4910.468 kb on + strand, within Psyr_4121at 4910.468 kb on + strand, within Psyr_4121at 4910.468 kb on + strand, within Psyr_4121at 4910.468 kb on + strand, within Psyr_4121at 4910.469 kb on - strand, within Psyr_4121at 4910.469 kb on - strand, within Psyr_4121at 4910.469 kb on - strand, within Psyr_4121at 4910.469 kb on - strand, within Psyr_4121at 4910.528 kb on + strand, within Psyr_4121at 4910.529 kb on - strand, within Psyr_4121at 4910.529 kb on - strand, within Psyr_4121at 4910.546 kb on + strand, within Psyr_4121at 4910.547 kb on - strand, within Psyr_4121at 4910.738 kb on + strand, within Psyr_4121at 4910.739 kb on - strand, within Psyr_4121at 4910.813 kb on + strand, within Psyr_4121at 4910.814 kb on - strand, within Psyr_4121at 4910.814 kb on - strand, within Psyr_4121at 4910.922 kb on + strandat 4910.922 kb on + strandat 4910.922 kb on + strandat 4910.922 kb on + strandat 4910.923 kb on - strandat 4910.923 kb on - strandat 4910.923 kb on - strandat 4910.923 kb on - strandat 4910.923 kb on - strandat 4910.923 kb on - strandat 4910.923 kb on - strandat 4910.923 kb on - strandat 4910.924 kb on + strandat 4910.924 kb on + strandat 4910.924 kb on + strandat 4910.925 kb on - strandat 4910.925 kb on - strandat 4910.925 kb on - strandat 4910.982 kb on + strandat 4910.982 kb on + strandat 4910.983 kb on - strandat 4910.983 kb on - strandat 4910.983 kb on - strandat 4910.983 kb on - strandat 4911.116 kb on + strandat 4911.117 kb on - strandat 4911.170 kb on + strand, within Psyr_4122at 4911.170 kb on + strand, within Psyr_4122at 4911.171 kb on - strand, within Psyr_4122at 4911.282 kb on - strand, within Psyr_4122at 4911.282 kb on - strand, within Psyr_4122at 4911.605 kb on + strand, within Psyr_4122at 4911.605 kb on + strand, within Psyr_4122at 4911.605 kb on + strand, within Psyr_4122at 4911.605 kb on + strand, within Psyr_4122at 4911.893 kb on + strand, within Psyr_4122at 4911.893 kb on + strand, within Psyr_4122at 4911.893 kb on + strand, within Psyr_4122at 4911.893 kb on + strand, within Psyr_4122at 4911.894 kb on - strand, within Psyr_4122at 4911.894 kb on - strand, within Psyr_4122at 4911.894 kb on - strand, within Psyr_4122at 4911.894 kb on - strand, within Psyr_4122at 4911.910 kb on + strand, within Psyr_4122at 4911.910 kb on + strand, within Psyr_4122at 4911.911 kb on - strand, within Psyr_4122at 4911.911 kb on - strand, within Psyr_4122at 4911.926 kb on + strand, within Psyr_4122at 4911.927 kb on - strand, within Psyr_4122at 4912.017 kb on - strandat 4912.094 kb on + strandat 4912.102 kb on + strandat 4912.103 kb on - strandat 4912.113 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nalidixic 12.5 ug/ml
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4,910,036 + Psyr_4121 0.11 +2.2
4,910,036 + Psyr_4121 0.11 +0.9
4,910,292 - Psyr_4121 0.37 +0.1
4,910,339 + Psyr_4121 0.41 +0.4
4,910,339 + Psyr_4121 0.41 -1.6
4,910,340 - Psyr_4121 0.42 +1.1
4,910,340 - Psyr_4121 0.42 -0.7
4,910,340 - Psyr_4121 0.42 +0.7
4,910,426 + Psyr_4121 0.50 +1.9
4,910,427 - Psyr_4121 0.50 +0.9
4,910,427 - Psyr_4121 0.50 -0.8
4,910,462 + Psyr_4121 0.54 -1.3
4,910,462 + Psyr_4121 0.54 +0.0
4,910,462 + Psyr_4121 0.54 +0.6
4,910,462 + Psyr_4121 0.54 -0.4
4,910,462 + Psyr_4121 0.54 +0.5
4,910,463 - Psyr_4121 0.54 +0.3
4,910,463 - Psyr_4121 0.54 +0.8
4,910,463 - Psyr_4121 0.54 -1.5
4,910,463 - Psyr_4121 0.54 +3.2
4,910,463 - Psyr_4121 0.54 -0.2
4,910,463 - Psyr_4121 0.54 -1.5
4,910,468 + Psyr_4121 0.54 +0.5
4,910,468 + Psyr_4121 0.54 -1.2
4,910,468 + Psyr_4121 0.54 +0.2
4,910,468 + Psyr_4121 0.54 -0.8
4,910,468 + Psyr_4121 0.54 +0.9
4,910,469 - Psyr_4121 0.54 +0.2
4,910,469 - Psyr_4121 0.54 -2.0
4,910,469 - Psyr_4121 0.54 -1.7
4,910,469 - Psyr_4121 0.54 +0.2
4,910,528 + Psyr_4121 0.60 +1.4
4,910,529 - Psyr_4121 0.60 +0.1
4,910,529 - Psyr_4121 0.60 +0.2
4,910,546 + Psyr_4121 0.62 +1.2
4,910,547 - Psyr_4121 0.62 -0.5
4,910,738 + Psyr_4121 0.81 +0.3
4,910,739 - Psyr_4121 0.81 +0.5
4,910,813 + Psyr_4121 0.89 +0.6
4,910,814 - Psyr_4121 0.89 +0.8
4,910,814 - Psyr_4121 0.89 -1.2
4,910,922 + +0.1
4,910,922 + +0.1
4,910,922 + -1.1
4,910,922 + +1.7
4,910,923 - -1.4
4,910,923 - -0.7
4,910,923 - -0.1
4,910,923 - +0.7
4,910,923 - -0.6
4,910,923 - -0.5
4,910,923 - +0.3
4,910,923 - +0.9
4,910,924 + +0.2
4,910,924 + +0.1
4,910,924 + -1.2
4,910,925 - +0.7
4,910,925 - +1.3
4,910,925 - -0.1
4,910,982 + -0.3
4,910,982 + -0.1
4,910,983 - -1.6
4,910,983 - +0.5
4,910,983 - -0.1
4,910,983 - +2.5
4,911,116 + +1.9
4,911,117 - +0.8
4,911,170 + Psyr_4122 0.14 -0.1
4,911,170 + Psyr_4122 0.14 +1.2
4,911,171 - Psyr_4122 0.14 +0.1
4,911,282 - Psyr_4122 0.24 +0.9
4,911,282 - Psyr_4122 0.24 +2.5
4,911,605 + Psyr_4122 0.54 +0.9
4,911,605 + Psyr_4122 0.54 -0.0
4,911,605 + Psyr_4122 0.54 +1.0
4,911,605 + Psyr_4122 0.54 -1.7
4,911,893 + Psyr_4122 0.80 -1.1
4,911,893 + Psyr_4122 0.80 +1.4
4,911,893 + Psyr_4122 0.80 +0.5
4,911,893 + Psyr_4122 0.80 -0.5
4,911,894 - Psyr_4122 0.80 +0.1
4,911,894 - Psyr_4122 0.80 +0.5
4,911,894 - Psyr_4122 0.80 +0.9
4,911,894 - Psyr_4122 0.80 +1.6
4,911,910 + Psyr_4122 0.81 -0.5
4,911,910 + Psyr_4122 0.81 +2.5
4,911,911 - Psyr_4122 0.81 -0.5
4,911,911 - Psyr_4122 0.81 +2.0
4,911,926 + Psyr_4122 0.83 -2.3
4,911,927 - Psyr_4122 0.83 -0.2
4,912,017 - -0.8
4,912,094 + +1.5
4,912,102 + +0.9
4,912,103 - +1.1
4,912,113 + -0.2

Or see this region's nucleotide sequence