Experiment: KB with Nalidixic 12.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4004 and Psyr_4005 are separated by 14 nucleotides Psyr_4005 and Psyr_4006 are separated by 479 nucleotides
Psyr_4004: Psyr_4004 - Drug resistance transporter EmrB/QacA subfamily, at 4,767,044 to 4,768,540
_4004
Psyr_4005: Psyr_4005 - conserved hypothetical protein, at 4,768,555 to 4,769,688
_4005
Psyr_4006: Psyr_4006 - transcriptional regulator, TetR family, at 4,770,168 to 4,770,827
_4006
Position (kb) 4768
4769
4770 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 4767.644 kb on + strand, within Psyr_4004 at 4767.748 kb on - strand, within Psyr_4004 at 4767.789 kb on - strand, within Psyr_4004 at 4768.001 kb on + strand, within Psyr_4004 at 4768.002 kb on - strand, within Psyr_4004 at 4768.217 kb on - strand, within Psyr_4004 at 4768.516 kb on + strand at 4768.516 kb on + strand at 4768.516 kb on + strand at 4768.516 kb on + strand at 4768.516 kb on + strand at 4768.516 kb on + strand at 4768.516 kb on + strand at 4768.516 kb on + strand at 4768.516 kb on + strand at 4768.516 kb on + strand at 4768.517 kb on - strand at 4768.517 kb on - strand at 4768.517 kb on - strand at 4768.517 kb on - strand at 4768.517 kb on - strand at 4768.517 kb on - strand at 4768.517 kb on - strand at 4768.522 kb on - strand at 4768.522 kb on - strand at 4768.522 kb on - strand at 4768.600 kb on + strand at 4768.600 kb on + strand at 4768.600 kb on + strand at 4768.600 kb on + strand at 4768.600 kb on + strand at 4768.600 kb on + strand at 4768.600 kb on + strand at 4768.600 kb on + strand at 4768.601 kb on - strand at 4768.601 kb on - strand at 4768.601 kb on - strand at 4768.601 kb on - strand at 4768.601 kb on - strand at 4768.601 kb on - strand at 4768.601 kb on - strand at 4768.601 kb on - strand at 4768.601 kb on - strand at 4768.601 kb on - strand at 4768.601 kb on - strand at 4768.601 kb on - strand at 4768.602 kb on + strand at 4768.602 kb on + strand at 4768.603 kb on - strand at 4768.603 kb on - strand at 4768.603 kb on - strand at 4768.603 kb on - strand at 4768.707 kb on - strand, within Psyr_4005 at 4768.742 kb on + strand, within Psyr_4005 at 4768.767 kb on + strand, within Psyr_4005 at 4768.853 kb on + strand, within Psyr_4005 at 4768.853 kb on + strand, within Psyr_4005 at 4768.854 kb on - strand, within Psyr_4005 at 4768.854 kb on - strand, within Psyr_4005 at 4768.854 kb on - strand, within Psyr_4005 at 4768.854 kb on - strand, within Psyr_4005 at 4768.928 kb on + strand, within Psyr_4005 at 4769.025 kb on - strand, within Psyr_4005 at 4769.101 kb on - strand, within Psyr_4005 at 4769.135 kb on + strand, within Psyr_4005 at 4769.136 kb on - strand, within Psyr_4005 at 4769.136 kb on - strand, within Psyr_4005 at 4769.136 kb on - strand, within Psyr_4005 at 4769.136 kb on - strand, within Psyr_4005 at 4769.210 kb on + strand, within Psyr_4005 at 4769.210 kb on + strand, within Psyr_4005 at 4769.211 kb on - strand, within Psyr_4005 at 4769.228 kb on + strand, within Psyr_4005 at 4769.229 kb on - strand, within Psyr_4005 at 4769.258 kb on + strand, within Psyr_4005 at 4769.259 kb on - strand, within Psyr_4005 at 4769.259 kb on - strand, within Psyr_4005 at 4769.259 kb on - strand, within Psyr_4005 at 4769.259 kb on - strand, within Psyr_4005 at 4769.259 kb on - strand, within Psyr_4005 at 4769.259 kb on - strand, within Psyr_4005 at 4769.339 kb on + strand, within Psyr_4005 at 4769.339 kb on + strand, within Psyr_4005 at 4769.339 kb on + strand, within Psyr_4005 at 4769.339 kb on + strand, within Psyr_4005 at 4769.339 kb on + strand, within Psyr_4005 at 4769.339 kb on + strand, within Psyr_4005 at 4769.340 kb on - strand, within Psyr_4005 at 4769.340 kb on - strand, within Psyr_4005 at 4769.340 kb on - strand, within Psyr_4005 at 4769.501 kb on + strand, within Psyr_4005 at 4769.501 kb on + strand, within Psyr_4005 at 4769.501 kb on + strand, within Psyr_4005 at 4769.501 kb on + strand, within Psyr_4005 at 4769.502 kb on - strand, within Psyr_4005 at 4769.565 kb on - strand, within Psyr_4005 at 4769.565 kb on - strand, within Psyr_4005 at 4769.590 kb on + strand at 4769.590 kb on + strand at 4769.590 kb on + strand at 4769.591 kb on - strand at 4769.848 kb on + strand at 4769.848 kb on + strand at 4769.848 kb on + strand at 4769.848 kb on + strand at 4769.848 kb on + strand at 4769.849 kb on - strand at 4769.849 kb on - strand at 4769.966 kb on + strand at 4769.966 kb on + strand at 4769.966 kb on + strand at 4769.966 kb on + strand at 4769.967 kb on - strand at 4769.967 kb on - strand at 4769.967 kb on - strand at 4769.967 kb on - strand at 4769.967 kb on - strand at 4769.967 kb on - strand at 4769.972 kb on + strand at 4769.972 kb on + strand at 4769.972 kb on + strand at 4769.972 kb on + strand at 4769.972 kb on + strand at 4769.973 kb on - strand at 4769.973 kb on - strand at 4769.987 kb on + strand at 4769.987 kb on + strand at 4769.987 kb on + strand at 4769.998 kb on + strand at 4769.998 kb on + strand at 4769.999 kb on - strand at 4769.999 kb on - strand at 4770.003 kb on + strand at 4770.003 kb on + strand at 4770.003 kb on + strand at 4770.003 kb on + strand at 4770.003 kb on + strand at 4770.003 kb on + strand at 4770.004 kb on - strand at 4770.004 kb on - strand at 4770.029 kb on + strand at 4770.029 kb on + strand at 4770.085 kb on + strand at 4770.085 kb on + strand at 4770.085 kb on + strand at 4770.085 kb on + strand at 4770.085 kb on + strand at 4770.085 kb on + strand at 4770.085 kb on + strand at 4770.085 kb on + strand at 4770.085 kb on + strand at 4770.085 kb on + strand at 4770.085 kb on + strand at 4770.085 kb on + strand at 4770.085 kb on + strand at 4770.086 kb on - strand at 4770.086 kb on - strand at 4770.086 kb on - strand at 4770.086 kb on - strand at 4770.086 kb on - strand at 4770.086 kb on - strand at 4770.086 kb on - strand at 4770.086 kb on - strand at 4770.086 kb on - strand at 4770.086 kb on - strand at 4770.086 kb on - strand at 4770.086 kb on - strand at 4770.086 kb on - strand at 4770.087 kb on + strand at 4770.087 kb on + strand at 4770.087 kb on + strand at 4770.087 kb on + strand at 4770.087 kb on + strand at 4770.088 kb on - strand at 4770.088 kb on - strand at 4770.088 kb on - strand at 4770.088 kb on - strand at 4770.088 kb on - strand at 4770.191 kb on + strand at 4770.301 kb on + strand, within Psyr_4006 at 4770.301 kb on + strand, within Psyr_4006 at 4770.302 kb on - strand, within Psyr_4006 at 4770.302 kb on - strand, within Psyr_4006 at 4770.302 kb on - strand, within Psyr_4006 at 4770.302 kb on - strand, within Psyr_4006 at 4770.302 kb on - strand, within Psyr_4006 at 4770.302 kb on - strand, within Psyr_4006 at 4770.319 kb on + strand, within Psyr_4006 at 4770.319 kb on + strand, within Psyr_4006 at 4770.423 kb on + strand, within Psyr_4006 at 4770.424 kb on - strand, within Psyr_4006 at 4770.424 kb on - strand, within Psyr_4006 at 4770.424 kb on - strand, within Psyr_4006 at 4770.424 kb on - strand, within Psyr_4006 at 4770.665 kb on + strand, within Psyr_4006 at 4770.682 kb on + strand, within Psyr_4006 at 4770.682 kb on + strand, within Psyr_4006 at 4770.682 kb on + strand, within Psyr_4006 at 4770.683 kb on - strand, within Psyr_4006 at 4770.683 kb on - strand, within Psyr_4006 at 4770.683 kb on - strand, within Psyr_4006 at 4770.683 kb on - strand, within Psyr_4006
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nalidixic 12.5 ug/ml remove 4,767,644 + Psyr_4004 0.40 -0.5 4,767,748 - Psyr_4004 0.47 -0.0 4,767,789 - Psyr_4004 0.50 +0.5 4,768,001 + Psyr_4004 0.64 -1.0 4,768,002 - Psyr_4004 0.64 -0.0 4,768,217 - Psyr_4004 0.78 +0.1 4,768,516 + -0.6 4,768,516 + +0.4 4,768,516 + -0.8 4,768,516 + +1.0 4,768,516 + -1.6 4,768,516 + +0.1 4,768,516 + +0.3 4,768,516 + +0.0 4,768,516 + -2.5 4,768,516 + -0.4 4,768,517 - -0.2 4,768,517 - -0.6 4,768,517 - -0.5 4,768,517 - +0.4 4,768,517 - -0.2 4,768,517 - -0.6 4,768,517 - -0.1 4,768,522 - -1.0 4,768,522 - -2.2 4,768,522 - +0.5 4,768,600 + +1.3 4,768,600 + +0.2 4,768,600 + +0.2 4,768,600 + -2.4 4,768,600 + -0.0 4,768,600 + -1.7 4,768,600 + +1.4 4,768,600 + +0.4 4,768,601 - -0.4 4,768,601 - +0.2 4,768,601 - +1.0 4,768,601 - -0.0 4,768,601 - -1.4 4,768,601 - +0.4 4,768,601 - -0.4 4,768,601 - +1.0 4,768,601 - -0.2 4,768,601 - +1.0 4,768,601 - -2.9 4,768,601 - -1.8 4,768,602 + -0.1 4,768,602 + -0.5 4,768,603 - +0.2 4,768,603 - -0.1 4,768,603 - +0.7 4,768,603 - -1.5 4,768,707 - Psyr_4005 0.13 +0.1 4,768,742 + Psyr_4005 0.16 +0.7 4,768,767 + Psyr_4005 0.19 +1.0 4,768,853 + Psyr_4005 0.26 -0.5 4,768,853 + Psyr_4005 0.26 +1.0 4,768,854 - Psyr_4005 0.26 +0.3 4,768,854 - Psyr_4005 0.26 +0.0 4,768,854 - Psyr_4005 0.26 -0.3 4,768,854 - Psyr_4005 0.26 +0.3 4,768,928 + Psyr_4005 0.33 -0.2 4,769,025 - Psyr_4005 0.41 -0.0 4,769,101 - Psyr_4005 0.48 -1.0 4,769,135 + Psyr_4005 0.51 -0.4 4,769,136 - Psyr_4005 0.51 -0.6 4,769,136 - Psyr_4005 0.51 +2.5 4,769,136 - Psyr_4005 0.51 +1.2 4,769,136 - Psyr_4005 0.51 +1.0 4,769,210 + Psyr_4005 0.58 +0.3 4,769,210 + Psyr_4005 0.58 +0.2 4,769,211 - Psyr_4005 0.58 -0.2 4,769,228 + Psyr_4005 0.59 +1.7 4,769,229 - Psyr_4005 0.59 -0.3 4,769,258 + Psyr_4005 0.62 +1.4 4,769,259 - Psyr_4005 0.62 +0.3 4,769,259 - Psyr_4005 0.62 +0.6 4,769,259 - Psyr_4005 0.62 +0.5 4,769,259 - Psyr_4005 0.62 -0.2 4,769,259 - Psyr_4005 0.62 +1.0 4,769,259 - Psyr_4005 0.62 -0.2 4,769,339 + Psyr_4005 0.69 -0.0 4,769,339 + Psyr_4005 0.69 +2.0 4,769,339 + Psyr_4005 0.69 +1.7 4,769,339 + Psyr_4005 0.69 -0.0 4,769,339 + Psyr_4005 0.69 -0.1 4,769,339 + Psyr_4005 0.69 +0.5 4,769,340 - Psyr_4005 0.69 +1.1 4,769,340 - Psyr_4005 0.69 -1.9 4,769,340 - Psyr_4005 0.69 -0.8 4,769,501 + Psyr_4005 0.83 +1.0 4,769,501 + Psyr_4005 0.83 +0.6 4,769,501 + Psyr_4005 0.83 +1.6 4,769,501 + Psyr_4005 0.83 +1.0 4,769,502 - Psyr_4005 0.84 -0.3 4,769,565 - Psyr_4005 0.89 +1.2 4,769,565 - Psyr_4005 0.89 +1.2 4,769,590 + +1.7 4,769,590 + +2.8 4,769,590 + +1.4 4,769,591 - +0.5 4,769,848 + +2.8 4,769,848 + +2.9 4,769,848 + +3.3 4,769,848 + +5.2 4,769,848 + +2.5 4,769,849 - +0.9 4,769,849 - +1.1 4,769,966 + +2.2 4,769,966 + +2.2 4,769,966 + +1.1 4,769,966 + +2.0 4,769,967 - -1.9 4,769,967 - +0.7 4,769,967 - +0.1 4,769,967 - -1.6 4,769,967 - +0.9 4,769,967 - -0.5 4,769,972 + -0.2 4,769,972 + +1.6 4,769,972 + -0.1 4,769,972 + +1.7 4,769,972 + +1.9 4,769,973 - +0.2 4,769,973 - +0.5 4,769,987 + +1.7 4,769,987 + +1.4 4,769,987 + +3.0 4,769,998 + +2.4 4,769,998 + +2.9 4,769,999 - -0.7 4,769,999 - -3.1 4,770,003 + +1.1 4,770,003 + +2.2 4,770,003 + +1.2 4,770,003 + +2.3 4,770,003 + +0.9 4,770,003 + +2.6 4,770,004 - -0.3 4,770,004 - -2.2 4,770,029 + +3.2 4,770,029 + +4.3 4,770,085 + +4.8 4,770,085 + +4.6 4,770,085 + +5.1 4,770,085 + +6.5 4,770,085 + +3.5 4,770,085 + +4.5 4,770,085 + +4.9 4,770,085 + +4.6 4,770,085 + +4.0 4,770,085 + +4.6 4,770,085 + +2.3 4,770,085 + +5.3 4,770,085 + +3.6 4,770,086 - +0.0 4,770,086 - -2.8 4,770,086 - -0.9 4,770,086 - +0.9 4,770,086 - +0.4 4,770,086 - -0.8 4,770,086 - -2.8 4,770,086 - -0.4 4,770,086 - -0.1 4,770,086 - -0.1 4,770,086 - +2.9 4,770,086 - -0.3 4,770,086 - +0.5 4,770,087 + +4.4 4,770,087 + +4.7 4,770,087 + +4.5 4,770,087 + +5.4 4,770,087 + +5.7 4,770,088 - -0.7 4,770,088 - -1.8 4,770,088 - -1.9 4,770,088 - +2.3 4,770,088 - -0.4 4,770,191 + +5.9 4,770,301 + Psyr_4006 0.20 +6.8 4,770,301 + Psyr_4006 0.20 +6.3 4,770,302 - Psyr_4006 0.20 +5.9 4,770,302 - Psyr_4006 0.20 +6.0 4,770,302 - Psyr_4006 0.20 +7.5 4,770,302 - Psyr_4006 0.20 +6.9 4,770,302 - Psyr_4006 0.20 +6.3 4,770,302 - Psyr_4006 0.20 +6.4 4,770,319 + Psyr_4006 0.23 +6.2 4,770,319 + Psyr_4006 0.23 +7.6 4,770,423 + Psyr_4006 0.39 +5.9 4,770,424 - Psyr_4006 0.39 +7.0 4,770,424 - Psyr_4006 0.39 +6.7 4,770,424 - Psyr_4006 0.39 +6.8 4,770,424 - Psyr_4006 0.39 +6.5 4,770,665 + Psyr_4006 0.75 +6.8 4,770,682 + Psyr_4006 0.78 +6.4 4,770,682 + Psyr_4006 0.78 +7.0 4,770,682 + Psyr_4006 0.78 +6.4 4,770,683 - Psyr_4006 0.78 +5.8 4,770,683 - Psyr_4006 0.78 +6.4 4,770,683 - Psyr_4006 0.78 +6.1 4,770,683 - Psyr_4006 0.78 +6.1
Or see this region's nucleotide sequence