Experiment: KB with Nalidixic 12.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4002 and Psyr_4003 are separated by 0 nucleotides Psyr_4003 and Psyr_4004 are separated by 462 nucleotides Psyr_4004 and Psyr_4005 are separated by 14 nucleotides
Psyr_4002: Psyr_4002 - conserved hypothetical protein, at 4,765,718 to 4,766,341
_4002
Psyr_4003: Psyr_4003 - conserved hypothetical protein, at 4,766,342 to 4,766,581
_4003
Psyr_4004: Psyr_4004 - Drug resistance transporter EmrB/QacA subfamily, at 4,767,044 to 4,768,540
_4004
Psyr_4005: Psyr_4005 - conserved hypothetical protein, at 4,768,555 to 4,769,688
_4005
Position (kb) 4767
4768
4769 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4766.092 kb on - strand, within Psyr_4002 at 4766.238 kb on - strand, within Psyr_4002 at 4766.238 kb on - strand, within Psyr_4002 at 4766.288 kb on + strand at 4766.288 kb on + strand at 4766.515 kb on + strand, within Psyr_4003 at 4766.515 kb on + strand, within Psyr_4003 at 4766.515 kb on + strand, within Psyr_4003 at 4766.517 kb on + strand, within Psyr_4003 at 4766.517 kb on + strand, within Psyr_4003 at 4766.517 kb on + strand, within Psyr_4003 at 4766.517 kb on + strand, within Psyr_4003 at 4766.517 kb on + strand, within Psyr_4003 at 4766.517 kb on + strand, within Psyr_4003 at 4766.517 kb on + strand, within Psyr_4003 at 4766.518 kb on - strand, within Psyr_4003 at 4766.565 kb on + strand at 4766.565 kb on + strand at 4766.565 kb on + strand at 4766.565 kb on + strand at 4766.566 kb on - strand at 4766.566 kb on - strand at 4766.566 kb on - strand at 4766.566 kb on - strand at 4766.566 kb on - strand at 4766.600 kb on + strand at 4766.600 kb on + strand at 4766.620 kb on - strand at 4766.693 kb on - strand at 4766.693 kb on - strand at 4766.693 kb on - strand at 4766.699 kb on + strand at 4766.699 kb on + strand at 4766.700 kb on - strand at 4766.733 kb on + strand at 4766.733 kb on + strand at 4766.734 kb on - strand at 4766.757 kb on - strand at 4766.804 kb on + strand at 4766.805 kb on - strand at 4766.805 kb on - strand at 4766.805 kb on - strand at 4766.807 kb on - strand at 4766.807 kb on - strand at 4766.822 kb on - strand at 4766.851 kb on + strand at 4766.851 kb on + strand at 4766.852 kb on - strand at 4766.852 kb on - strand at 4766.865 kb on + strand at 4766.865 kb on + strand at 4766.865 kb on + strand at 4766.865 kb on + strand at 4766.866 kb on - strand at 4766.866 kb on - strand at 4766.866 kb on - strand at 4766.968 kb on - strand at 4766.984 kb on - strand at 4767.055 kb on + strand at 4767.186 kb on + strand at 4767.187 kb on - strand at 4767.187 kb on - strand at 4767.209 kb on + strand, within Psyr_4004 at 4767.209 kb on + strand, within Psyr_4004 at 4767.209 kb on + strand, within Psyr_4004 at 4767.209 kb on + strand, within Psyr_4004 at 4767.210 kb on - strand, within Psyr_4004 at 4767.210 kb on - strand, within Psyr_4004 at 4767.210 kb on - strand, within Psyr_4004 at 4767.210 kb on - strand, within Psyr_4004 at 4767.461 kb on + strand, within Psyr_4004 at 4767.462 kb on - strand, within Psyr_4004 at 4767.462 kb on - strand, within Psyr_4004 at 4767.476 kb on + strand, within Psyr_4004 at 4767.476 kb on + strand, within Psyr_4004 at 4767.476 kb on + strand, within Psyr_4004 at 4767.476 kb on + strand, within Psyr_4004 at 4767.476 kb on + strand, within Psyr_4004 at 4767.476 kb on + strand, within Psyr_4004 at 4767.476 kb on + strand, within Psyr_4004 at 4767.476 kb on + strand, within Psyr_4004 at 4767.477 kb on - strand, within Psyr_4004 at 4767.477 kb on - strand, within Psyr_4004 at 4767.527 kb on + strand, within Psyr_4004 at 4767.527 kb on + strand, within Psyr_4004 at 4767.528 kb on - strand, within Psyr_4004 at 4767.644 kb on + strand, within Psyr_4004 at 4767.748 kb on - strand, within Psyr_4004 at 4767.789 kb on - strand, within Psyr_4004 at 4768.001 kb on + strand, within Psyr_4004 at 4768.002 kb on - strand, within Psyr_4004 at 4768.217 kb on - strand, within Psyr_4004 at 4768.516 kb on + strand at 4768.516 kb on + strand at 4768.516 kb on + strand at 4768.516 kb on + strand at 4768.516 kb on + strand at 4768.516 kb on + strand at 4768.516 kb on + strand at 4768.516 kb on + strand at 4768.516 kb on + strand at 4768.516 kb on + strand at 4768.517 kb on - strand at 4768.517 kb on - strand at 4768.517 kb on - strand at 4768.517 kb on - strand at 4768.517 kb on - strand at 4768.517 kb on - strand at 4768.517 kb on - strand at 4768.522 kb on - strand at 4768.522 kb on - strand at 4768.522 kb on - strand at 4768.600 kb on + strand at 4768.600 kb on + strand at 4768.600 kb on + strand at 4768.600 kb on + strand at 4768.600 kb on + strand at 4768.600 kb on + strand at 4768.600 kb on + strand at 4768.600 kb on + strand at 4768.601 kb on - strand at 4768.601 kb on - strand at 4768.601 kb on - strand at 4768.601 kb on - strand at 4768.601 kb on - strand at 4768.601 kb on - strand at 4768.601 kb on - strand at 4768.601 kb on - strand at 4768.601 kb on - strand at 4768.601 kb on - strand at 4768.601 kb on - strand at 4768.601 kb on - strand at 4768.602 kb on + strand at 4768.602 kb on + strand at 4768.603 kb on - strand at 4768.603 kb on - strand at 4768.603 kb on - strand at 4768.603 kb on - strand at 4768.707 kb on - strand, within Psyr_4005 at 4768.742 kb on + strand, within Psyr_4005 at 4768.767 kb on + strand, within Psyr_4005 at 4768.853 kb on + strand, within Psyr_4005 at 4768.853 kb on + strand, within Psyr_4005 at 4768.854 kb on - strand, within Psyr_4005 at 4768.854 kb on - strand, within Psyr_4005 at 4768.854 kb on - strand, within Psyr_4005 at 4768.854 kb on - strand, within Psyr_4005 at 4768.928 kb on + strand, within Psyr_4005 at 4769.025 kb on - strand, within Psyr_4005 at 4769.101 kb on - strand, within Psyr_4005 at 4769.135 kb on + strand, within Psyr_4005 at 4769.136 kb on - strand, within Psyr_4005 at 4769.136 kb on - strand, within Psyr_4005 at 4769.136 kb on - strand, within Psyr_4005 at 4769.136 kb on - strand, within Psyr_4005 at 4769.210 kb on + strand, within Psyr_4005 at 4769.210 kb on + strand, within Psyr_4005 at 4769.211 kb on - strand, within Psyr_4005 at 4769.228 kb on + strand, within Psyr_4005 at 4769.229 kb on - strand, within Psyr_4005 at 4769.258 kb on + strand, within Psyr_4005 at 4769.259 kb on - strand, within Psyr_4005 at 4769.259 kb on - strand, within Psyr_4005 at 4769.259 kb on - strand, within Psyr_4005 at 4769.259 kb on - strand, within Psyr_4005 at 4769.259 kb on - strand, within Psyr_4005 at 4769.259 kb on - strand, within Psyr_4005 at 4769.339 kb on + strand, within Psyr_4005 at 4769.339 kb on + strand, within Psyr_4005 at 4769.339 kb on + strand, within Psyr_4005 at 4769.339 kb on + strand, within Psyr_4005 at 4769.339 kb on + strand, within Psyr_4005 at 4769.339 kb on + strand, within Psyr_4005 at 4769.340 kb on - strand, within Psyr_4005 at 4769.340 kb on - strand, within Psyr_4005 at 4769.340 kb on - strand, within Psyr_4005 at 4769.501 kb on + strand, within Psyr_4005 at 4769.501 kb on + strand, within Psyr_4005 at 4769.501 kb on + strand, within Psyr_4005 at 4769.501 kb on + strand, within Psyr_4005 at 4769.502 kb on - strand, within Psyr_4005
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nalidixic 12.5 ug/ml remove 4,766,092 - Psyr_4002 0.60 -1.4 4,766,238 - Psyr_4002 0.83 -2.4 4,766,238 - Psyr_4002 0.83 +0.5 4,766,288 + +1.5 4,766,288 + +1.7 4,766,515 + Psyr_4003 0.72 -1.4 4,766,515 + Psyr_4003 0.72 -0.5 4,766,515 + Psyr_4003 0.72 -0.0 4,766,517 + Psyr_4003 0.73 -0.0 4,766,517 + Psyr_4003 0.73 -0.9 4,766,517 + Psyr_4003 0.73 +1.0 4,766,517 + Psyr_4003 0.73 -1.6 4,766,517 + Psyr_4003 0.73 +0.5 4,766,517 + Psyr_4003 0.73 -0.6 4,766,517 + Psyr_4003 0.73 -0.5 4,766,518 - Psyr_4003 0.73 -0.8 4,766,565 + -0.8 4,766,565 + -0.5 4,766,565 + -0.2 4,766,565 + -1.3 4,766,566 - +0.3 4,766,566 - +0.7 4,766,566 - +0.4 4,766,566 - -1.8 4,766,566 - +0.5 4,766,600 + +0.2 4,766,600 + -0.7 4,766,620 - -0.3 4,766,693 - +2.4 4,766,693 - -1.0 4,766,693 - -0.0 4,766,699 + -0.6 4,766,699 + -1.0 4,766,700 - -1.2 4,766,733 + -1.1 4,766,733 + -1.0 4,766,734 - +1.2 4,766,757 - -1.6 4,766,804 + -1.0 4,766,805 - -0.8 4,766,805 - -0.5 4,766,805 - -0.4 4,766,807 - -0.3 4,766,807 - -0.6 4,766,822 - +0.8 4,766,851 + -3.1 4,766,851 + -0.4 4,766,852 - -1.8 4,766,852 - -1.0 4,766,865 + +0.5 4,766,865 + -1.2 4,766,865 + -0.0 4,766,865 + -1.4 4,766,866 - +0.4 4,766,866 - -0.6 4,766,866 - +0.2 4,766,968 - +1.0 4,766,984 - +0.6 4,767,055 + +0.2 4,767,186 + -1.6 4,767,187 - -1.6 4,767,187 - -0.0 4,767,209 + Psyr_4004 0.11 +0.2 4,767,209 + Psyr_4004 0.11 +0.4 4,767,209 + Psyr_4004 0.11 +0.3 4,767,209 + Psyr_4004 0.11 +0.4 4,767,210 - Psyr_4004 0.11 +0.0 4,767,210 - Psyr_4004 0.11 +0.3 4,767,210 - Psyr_4004 0.11 -0.6 4,767,210 - Psyr_4004 0.11 +0.2 4,767,461 + Psyr_4004 0.28 +0.4 4,767,462 - Psyr_4004 0.28 -0.1 4,767,462 - Psyr_4004 0.28 -0.7 4,767,476 + Psyr_4004 0.29 +0.3 4,767,476 + Psyr_4004 0.29 +1.0 4,767,476 + Psyr_4004 0.29 +0.5 4,767,476 + Psyr_4004 0.29 +1.0 4,767,476 + Psyr_4004 0.29 +1.4 4,767,476 + Psyr_4004 0.29 -0.8 4,767,476 + Psyr_4004 0.29 -0.2 4,767,476 + Psyr_4004 0.29 -1.2 4,767,477 - Psyr_4004 0.29 +0.2 4,767,477 - Psyr_4004 0.29 -0.2 4,767,527 + Psyr_4004 0.32 -0.2 4,767,527 + Psyr_4004 0.32 -0.3 4,767,528 - Psyr_4004 0.32 +0.7 4,767,644 + Psyr_4004 0.40 -0.5 4,767,748 - Psyr_4004 0.47 -0.0 4,767,789 - Psyr_4004 0.50 +0.5 4,768,001 + Psyr_4004 0.64 -1.0 4,768,002 - Psyr_4004 0.64 -0.0 4,768,217 - Psyr_4004 0.78 +0.1 4,768,516 + -0.6 4,768,516 + +0.4 4,768,516 + -0.8 4,768,516 + +1.0 4,768,516 + -1.6 4,768,516 + +0.1 4,768,516 + +0.3 4,768,516 + +0.0 4,768,516 + -2.5 4,768,516 + -0.4 4,768,517 - -0.2 4,768,517 - -0.6 4,768,517 - -0.5 4,768,517 - +0.4 4,768,517 - -0.2 4,768,517 - -0.6 4,768,517 - -0.1 4,768,522 - -1.0 4,768,522 - -2.2 4,768,522 - +0.5 4,768,600 + +1.3 4,768,600 + +0.2 4,768,600 + +0.2 4,768,600 + -2.4 4,768,600 + -0.0 4,768,600 + -1.7 4,768,600 + +1.4 4,768,600 + +0.4 4,768,601 - -0.4 4,768,601 - +0.2 4,768,601 - +1.0 4,768,601 - -0.0 4,768,601 - -1.4 4,768,601 - +0.4 4,768,601 - -0.4 4,768,601 - +1.0 4,768,601 - -0.2 4,768,601 - +1.0 4,768,601 - -2.9 4,768,601 - -1.8 4,768,602 + -0.1 4,768,602 + -0.5 4,768,603 - +0.2 4,768,603 - -0.1 4,768,603 - +0.7 4,768,603 - -1.5 4,768,707 - Psyr_4005 0.13 +0.1 4,768,742 + Psyr_4005 0.16 +0.7 4,768,767 + Psyr_4005 0.19 +1.0 4,768,853 + Psyr_4005 0.26 -0.5 4,768,853 + Psyr_4005 0.26 +1.0 4,768,854 - Psyr_4005 0.26 +0.3 4,768,854 - Psyr_4005 0.26 +0.0 4,768,854 - Psyr_4005 0.26 -0.3 4,768,854 - Psyr_4005 0.26 +0.3 4,768,928 + Psyr_4005 0.33 -0.2 4,769,025 - Psyr_4005 0.41 -0.0 4,769,101 - Psyr_4005 0.48 -1.0 4,769,135 + Psyr_4005 0.51 -0.4 4,769,136 - Psyr_4005 0.51 -0.6 4,769,136 - Psyr_4005 0.51 +2.5 4,769,136 - Psyr_4005 0.51 +1.2 4,769,136 - Psyr_4005 0.51 +1.0 4,769,210 + Psyr_4005 0.58 +0.3 4,769,210 + Psyr_4005 0.58 +0.2 4,769,211 - Psyr_4005 0.58 -0.2 4,769,228 + Psyr_4005 0.59 +1.7 4,769,229 - Psyr_4005 0.59 -0.3 4,769,258 + Psyr_4005 0.62 +1.4 4,769,259 - Psyr_4005 0.62 +0.3 4,769,259 - Psyr_4005 0.62 +0.6 4,769,259 - Psyr_4005 0.62 +0.5 4,769,259 - Psyr_4005 0.62 -0.2 4,769,259 - Psyr_4005 0.62 +1.0 4,769,259 - Psyr_4005 0.62 -0.2 4,769,339 + Psyr_4005 0.69 -0.0 4,769,339 + Psyr_4005 0.69 +2.0 4,769,339 + Psyr_4005 0.69 +1.7 4,769,339 + Psyr_4005 0.69 -0.0 4,769,339 + Psyr_4005 0.69 -0.1 4,769,339 + Psyr_4005 0.69 +0.5 4,769,340 - Psyr_4005 0.69 +1.1 4,769,340 - Psyr_4005 0.69 -1.9 4,769,340 - Psyr_4005 0.69 -0.8 4,769,501 + Psyr_4005 0.83 +1.0 4,769,501 + Psyr_4005 0.83 +0.6 4,769,501 + Psyr_4005 0.83 +1.6 4,769,501 + Psyr_4005 0.83 +1.0 4,769,502 - Psyr_4005 0.84 -0.3
Or see this region's nucleotide sequence