Experiment: KB with Nalidixic 12.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4001 and Psyr_4002 are separated by 145 nucleotides Psyr_4002 and Psyr_4003 are separated by 0 nucleotides Psyr_4003 and Psyr_4004 are separated by 462 nucleotides
Psyr_4001: Psyr_4001 - conserved domain protein, at 4,765,255 to 4,765,572
_4001
Psyr_4002: Psyr_4002 - conserved hypothetical protein, at 4,765,718 to 4,766,341
_4002
Psyr_4003: Psyr_4003 - conserved hypothetical protein, at 4,766,342 to 4,766,581
_4003
Psyr_4004: Psyr_4004 - Drug resistance transporter EmrB/QacA subfamily, at 4,767,044 to 4,768,540
_4004
Position (kb) 4766
4767 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4765.390 kb on - strand, within Psyr_4001 at 4765.550 kb on + strand at 4765.679 kb on + strand at 4765.679 kb on + strand at 4765.679 kb on + strand at 4765.680 kb on - strand at 4765.680 kb on - strand at 4765.694 kb on + strand at 4765.729 kb on + strand at 4765.730 kb on - strand at 4765.740 kb on - strand at 4765.791 kb on + strand, within Psyr_4002 at 4765.791 kb on + strand, within Psyr_4002 at 4765.856 kb on + strand, within Psyr_4002 at 4765.856 kb on + strand, within Psyr_4002 at 4765.856 kb on + strand, within Psyr_4002 at 4765.857 kb on - strand, within Psyr_4002 at 4765.857 kb on - strand, within Psyr_4002 at 4765.857 kb on - strand, within Psyr_4002 at 4765.880 kb on + strand, within Psyr_4002 at 4765.880 kb on + strand, within Psyr_4002 at 4765.880 kb on + strand, within Psyr_4002 at 4765.880 kb on + strand, within Psyr_4002 at 4765.880 kb on + strand, within Psyr_4002 at 4765.881 kb on - strand, within Psyr_4002 at 4765.881 kb on - strand, within Psyr_4002 at 4765.881 kb on - strand, within Psyr_4002 at 4765.933 kb on + strand, within Psyr_4002 at 4765.933 kb on + strand, within Psyr_4002 at 4765.933 kb on + strand, within Psyr_4002 at 4765.933 kb on + strand, within Psyr_4002 at 4765.937 kb on - strand, within Psyr_4002 at 4766.092 kb on - strand, within Psyr_4002 at 4766.238 kb on - strand, within Psyr_4002 at 4766.238 kb on - strand, within Psyr_4002 at 4766.288 kb on + strand at 4766.288 kb on + strand at 4766.515 kb on + strand, within Psyr_4003 at 4766.515 kb on + strand, within Psyr_4003 at 4766.515 kb on + strand, within Psyr_4003 at 4766.517 kb on + strand, within Psyr_4003 at 4766.517 kb on + strand, within Psyr_4003 at 4766.517 kb on + strand, within Psyr_4003 at 4766.517 kb on + strand, within Psyr_4003 at 4766.517 kb on + strand, within Psyr_4003 at 4766.517 kb on + strand, within Psyr_4003 at 4766.517 kb on + strand, within Psyr_4003 at 4766.518 kb on - strand, within Psyr_4003 at 4766.565 kb on + strand at 4766.565 kb on + strand at 4766.565 kb on + strand at 4766.565 kb on + strand at 4766.566 kb on - strand at 4766.566 kb on - strand at 4766.566 kb on - strand at 4766.566 kb on - strand at 4766.566 kb on - strand at 4766.600 kb on + strand at 4766.600 kb on + strand at 4766.620 kb on - strand at 4766.693 kb on - strand at 4766.693 kb on - strand at 4766.693 kb on - strand at 4766.699 kb on + strand at 4766.699 kb on + strand at 4766.700 kb on - strand at 4766.733 kb on + strand at 4766.733 kb on + strand at 4766.734 kb on - strand at 4766.757 kb on - strand at 4766.804 kb on + strand at 4766.805 kb on - strand at 4766.805 kb on - strand at 4766.805 kb on - strand at 4766.807 kb on - strand at 4766.807 kb on - strand at 4766.822 kb on - strand at 4766.851 kb on + strand at 4766.851 kb on + strand at 4766.852 kb on - strand at 4766.852 kb on - strand at 4766.865 kb on + strand at 4766.865 kb on + strand at 4766.865 kb on + strand at 4766.865 kb on + strand at 4766.866 kb on - strand at 4766.866 kb on - strand at 4766.866 kb on - strand at 4766.968 kb on - strand at 4766.984 kb on - strand at 4767.055 kb on + strand at 4767.186 kb on + strand at 4767.187 kb on - strand at 4767.187 kb on - strand at 4767.209 kb on + strand, within Psyr_4004 at 4767.209 kb on + strand, within Psyr_4004 at 4767.209 kb on + strand, within Psyr_4004 at 4767.209 kb on + strand, within Psyr_4004 at 4767.210 kb on - strand, within Psyr_4004 at 4767.210 kb on - strand, within Psyr_4004 at 4767.210 kb on - strand, within Psyr_4004 at 4767.210 kb on - strand, within Psyr_4004 at 4767.461 kb on + strand, within Psyr_4004 at 4767.462 kb on - strand, within Psyr_4004 at 4767.462 kb on - strand, within Psyr_4004 at 4767.476 kb on + strand, within Psyr_4004 at 4767.476 kb on + strand, within Psyr_4004 at 4767.476 kb on + strand, within Psyr_4004 at 4767.476 kb on + strand, within Psyr_4004 at 4767.476 kb on + strand, within Psyr_4004 at 4767.476 kb on + strand, within Psyr_4004 at 4767.476 kb on + strand, within Psyr_4004 at 4767.476 kb on + strand, within Psyr_4004 at 4767.477 kb on - strand, within Psyr_4004 at 4767.477 kb on - strand, within Psyr_4004 at 4767.527 kb on + strand, within Psyr_4004 at 4767.527 kb on + strand, within Psyr_4004 at 4767.528 kb on - strand, within Psyr_4004
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nalidixic 12.5 ug/ml remove 4,765,390 - Psyr_4001 0.42 -2.0 4,765,550 + +1.0 4,765,679 + +1.5 4,765,679 + -0.0 4,765,679 + +2.5 4,765,680 - +0.1 4,765,680 - -1.6 4,765,694 + -1.6 4,765,729 + -0.2 4,765,730 - -0.1 4,765,740 - +0.4 4,765,791 + Psyr_4002 0.12 -0.7 4,765,791 + Psyr_4002 0.12 -0.4 4,765,856 + Psyr_4002 0.22 -0.4 4,765,856 + Psyr_4002 0.22 -1.4 4,765,856 + Psyr_4002 0.22 -1.4 4,765,857 - Psyr_4002 0.22 +2.2 4,765,857 - Psyr_4002 0.22 -0.2 4,765,857 - Psyr_4002 0.22 +1.0 4,765,880 + Psyr_4002 0.26 -0.0 4,765,880 + Psyr_4002 0.26 +0.4 4,765,880 + Psyr_4002 0.26 +0.7 4,765,880 + Psyr_4002 0.26 +0.1 4,765,880 + Psyr_4002 0.26 -0.8 4,765,881 - Psyr_4002 0.26 -0.2 4,765,881 - Psyr_4002 0.26 +0.2 4,765,881 - Psyr_4002 0.26 -0.4 4,765,933 + Psyr_4002 0.34 +1.2 4,765,933 + Psyr_4002 0.34 -0.8 4,765,933 + Psyr_4002 0.34 -0.4 4,765,933 + Psyr_4002 0.34 -0.8 4,765,937 - Psyr_4002 0.35 -0.3 4,766,092 - Psyr_4002 0.60 -1.4 4,766,238 - Psyr_4002 0.83 -2.4 4,766,238 - Psyr_4002 0.83 +0.5 4,766,288 + +1.5 4,766,288 + +1.7 4,766,515 + Psyr_4003 0.72 -1.4 4,766,515 + Psyr_4003 0.72 -0.5 4,766,515 + Psyr_4003 0.72 -0.0 4,766,517 + Psyr_4003 0.73 -0.0 4,766,517 + Psyr_4003 0.73 -0.9 4,766,517 + Psyr_4003 0.73 +1.0 4,766,517 + Psyr_4003 0.73 -1.6 4,766,517 + Psyr_4003 0.73 +0.5 4,766,517 + Psyr_4003 0.73 -0.6 4,766,517 + Psyr_4003 0.73 -0.5 4,766,518 - Psyr_4003 0.73 -0.8 4,766,565 + -0.8 4,766,565 + -0.5 4,766,565 + -0.2 4,766,565 + -1.3 4,766,566 - +0.3 4,766,566 - +0.7 4,766,566 - +0.4 4,766,566 - -1.8 4,766,566 - +0.5 4,766,600 + +0.2 4,766,600 + -0.7 4,766,620 - -0.3 4,766,693 - +2.4 4,766,693 - -1.0 4,766,693 - -0.0 4,766,699 + -0.6 4,766,699 + -1.0 4,766,700 - -1.2 4,766,733 + -1.1 4,766,733 + -1.0 4,766,734 - +1.2 4,766,757 - -1.6 4,766,804 + -1.0 4,766,805 - -0.8 4,766,805 - -0.5 4,766,805 - -0.4 4,766,807 - -0.3 4,766,807 - -0.6 4,766,822 - +0.8 4,766,851 + -3.1 4,766,851 + -0.4 4,766,852 - -1.8 4,766,852 - -1.0 4,766,865 + +0.5 4,766,865 + -1.2 4,766,865 + -0.0 4,766,865 + -1.4 4,766,866 - +0.4 4,766,866 - -0.6 4,766,866 - +0.2 4,766,968 - +1.0 4,766,984 - +0.6 4,767,055 + +0.2 4,767,186 + -1.6 4,767,187 - -1.6 4,767,187 - -0.0 4,767,209 + Psyr_4004 0.11 +0.2 4,767,209 + Psyr_4004 0.11 +0.4 4,767,209 + Psyr_4004 0.11 +0.3 4,767,209 + Psyr_4004 0.11 +0.4 4,767,210 - Psyr_4004 0.11 +0.0 4,767,210 - Psyr_4004 0.11 +0.3 4,767,210 - Psyr_4004 0.11 -0.6 4,767,210 - Psyr_4004 0.11 +0.2 4,767,461 + Psyr_4004 0.28 +0.4 4,767,462 - Psyr_4004 0.28 -0.1 4,767,462 - Psyr_4004 0.28 -0.7 4,767,476 + Psyr_4004 0.29 +0.3 4,767,476 + Psyr_4004 0.29 +1.0 4,767,476 + Psyr_4004 0.29 +0.5 4,767,476 + Psyr_4004 0.29 +1.0 4,767,476 + Psyr_4004 0.29 +1.4 4,767,476 + Psyr_4004 0.29 -0.8 4,767,476 + Psyr_4004 0.29 -0.2 4,767,476 + Psyr_4004 0.29 -1.2 4,767,477 - Psyr_4004 0.29 +0.2 4,767,477 - Psyr_4004 0.29 -0.2 4,767,527 + Psyr_4004 0.32 -0.2 4,767,527 + Psyr_4004 0.32 -0.3 4,767,528 - Psyr_4004 0.32 +0.7
Or see this region's nucleotide sequence