Experiment: KB with Nalidixic 12.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3895 and Psyr_3896 are separated by 209 nucleotides Psyr_3896 and Psyr_3897 are separated by 200 nucleotides Psyr_3897 and Psyr_3898 are separated by 126 nucleotides Psyr_3898 and Psyr_3899 are separated by 88 nucleotides
Psyr_3895: Psyr_3895 - RNAse T, at 4,636,903 to 4,637,580
_3895
Psyr_3896: Psyr_3896 - BFD-like [2Fe-2S]-binding region, at 4,637,790 to 4,638,008
_3896
Psyr_3897: Psyr_3897 - Bacterioferritin, at 4,638,209 to 4,638,679
_3897
Psyr_3898: Psyr_3898 - Glutaredoxin-related protein, at 4,638,806 to 4,639,132
_3898
Psyr_3899: Psyr_3899 - Molybdopterin oxidoreductase:molybdopterin dinucleotide-binding region, at 4,639,221 to 4,641,329
_3899
Position (kb) 4638
4639 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4637.587 kb on + strand at 4637.588 kb on - strand at 4637.704 kb on + strand at 4637.705 kb on - strand at 4637.766 kb on + strand at 4637.784 kb on + strand at 4637.784 kb on + strand at 4637.785 kb on - strand at 4637.785 kb on - strand at 4637.789 kb on + strand at 4637.789 kb on + strand at 4637.789 kb on + strand at 4637.789 kb on + strand at 4637.789 kb on + strand at 4637.789 kb on + strand at 4637.789 kb on + strand at 4637.789 kb on + strand at 4637.789 kb on + strand at 4637.789 kb on + strand at 4637.789 kb on + strand at 4637.789 kb on + strand at 4637.789 kb on + strand at 4637.789 kb on + strand at 4637.789 kb on + strand at 4637.789 kb on + strand at 4637.789 kb on + strand at 4637.789 kb on + strand at 4637.789 kb on + strand at 4637.789 kb on + strand at 4637.789 kb on + strand at 4637.789 kb on + strand at 4637.789 kb on + strand at 4637.789 kb on + strand at 4637.789 kb on + strand at 4637.789 kb on + strand at 4637.789 kb on + strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.790 kb on - strand at 4637.793 kb on + strand at 4637.793 kb on + strand at 4637.793 kb on + strand at 4637.793 kb on + strand at 4637.793 kb on + strand at 4637.793 kb on + strand at 4637.793 kb on + strand at 4637.793 kb on + strand at 4637.793 kb on + strand at 4637.793 kb on + strand at 4637.793 kb on + strand at 4637.793 kb on + strand at 4637.793 kb on + strand at 4637.793 kb on + strand at 4637.793 kb on + strand at 4637.793 kb on + strand at 4637.794 kb on - strand at 4637.794 kb on - strand at 4637.794 kb on - strand at 4637.794 kb on - strand at 4637.794 kb on - strand at 4637.794 kb on - strand at 4637.794 kb on - strand at 4637.794 kb on - strand at 4637.794 kb on - strand at 4637.794 kb on - strand at 4637.794 kb on - strand at 4637.794 kb on - strand at 4637.794 kb on - strand at 4637.794 kb on - strand at 4637.794 kb on - strand at 4637.794 kb on - strand at 4637.794 kb on - strand at 4637.794 kb on - strand at 4637.863 kb on - strand, within Psyr_3896 at 4637.897 kb on + strand, within Psyr_3896 at 4637.898 kb on - strand, within Psyr_3896 at 4638.051 kb on - strand at 4638.058 kb on + strand at 4638.059 kb on - strand at 4638.122 kb on - strand at 4638.122 kb on - strand at 4638.136 kb on + strand at 4638.153 kb on + strand at 4638.177 kb on + strand at 4638.177 kb on + strand at 4638.177 kb on + strand at 4638.177 kb on + strand at 4638.177 kb on + strand at 4638.177 kb on + strand at 4638.177 kb on + strand at 4638.177 kb on + strand at 4638.177 kb on + strand at 4638.177 kb on + strand at 4638.177 kb on + strand at 4638.177 kb on + strand at 4638.178 kb on - strand at 4638.178 kb on - strand at 4638.178 kb on - strand at 4638.178 kb on - strand at 4638.178 kb on - strand at 4638.178 kb on - strand at 4638.178 kb on - strand at 4638.178 kb on - strand at 4638.178 kb on - strand at 4638.178 kb on - strand at 4638.179 kb on + strand at 4638.179 kb on + strand at 4638.179 kb on + strand at 4638.179 kb on + strand at 4638.179 kb on + strand at 4638.179 kb on + strand at 4638.179 kb on + strand at 4638.179 kb on + strand at 4638.179 kb on + strand at 4638.179 kb on + strand at 4638.180 kb on - strand at 4638.180 kb on - strand at 4638.180 kb on - strand at 4638.180 kb on - strand at 4638.181 kb on + strand at 4638.181 kb on + strand at 4638.181 kb on + strand at 4638.181 kb on + strand at 4638.181 kb on + strand at 4638.181 kb on + strand at 4638.181 kb on + strand at 4638.181 kb on + strand at 4638.181 kb on + strand at 4638.181 kb on + strand at 4638.182 kb on - strand at 4638.182 kb on - strand at 4638.182 kb on - strand at 4638.182 kb on - strand at 4638.182 kb on - strand at 4638.282 kb on - strand, within Psyr_3897 at 4638.282 kb on - strand, within Psyr_3897 at 4638.282 kb on - strand, within Psyr_3897 at 4638.282 kb on - strand, within Psyr_3897 at 4638.302 kb on + strand, within Psyr_3897 at 4638.302 kb on + strand, within Psyr_3897 at 4638.302 kb on + strand, within Psyr_3897 at 4638.302 kb on + strand, within Psyr_3897 at 4638.302 kb on + strand, within Psyr_3897 at 4638.303 kb on - strand, within Psyr_3897 at 4638.303 kb on - strand, within Psyr_3897 at 4638.303 kb on - strand, within Psyr_3897 at 4638.341 kb on + strand, within Psyr_3897 at 4638.341 kb on + strand, within Psyr_3897 at 4638.341 kb on + strand, within Psyr_3897 at 4638.343 kb on + strand, within Psyr_3897 at 4638.343 kb on + strand, within Psyr_3897 at 4638.343 kb on + strand, within Psyr_3897 at 4638.343 kb on + strand, within Psyr_3897 at 4638.344 kb on - strand, within Psyr_3897 at 4638.344 kb on - strand, within Psyr_3897 at 4638.344 kb on - strand, within Psyr_3897 at 4638.344 kb on - strand, within Psyr_3897 at 4638.344 kb on - strand, within Psyr_3897 at 4638.344 kb on - strand, within Psyr_3897 at 4638.368 kb on + strand, within Psyr_3897 at 4638.368 kb on + strand, within Psyr_3897 at 4638.368 kb on + strand, within Psyr_3897 at 4638.368 kb on + strand, within Psyr_3897 at 4638.368 kb on + strand, within Psyr_3897 at 4638.369 kb on - strand, within Psyr_3897 at 4638.639 kb on + strand at 4638.639 kb on + strand at 4638.639 kb on + strand at 4638.639 kb on + strand at 4638.640 kb on - strand at 4638.640 kb on - strand at 4638.640 kb on - strand at 4638.640 kb on - strand at 4638.653 kb on + strand at 4638.653 kb on + strand at 4638.653 kb on + strand at 4638.654 kb on - strand at 4638.654 kb on - strand at 4638.654 kb on - strand at 4638.654 kb on - strand at 4638.654 kb on - strand at 4638.742 kb on + strand at 4638.743 kb on - strand at 4638.743 kb on - strand at 4638.808 kb on - strand at 4639.152 kb on - strand at 4639.549 kb on + strand, within Psyr_3899 at 4639.549 kb on + strand, within Psyr_3899 at 4639.549 kb on + strand, within Psyr_3899 at 4639.550 kb on - strand, within Psyr_3899 at 4639.550 kb on - strand, within Psyr_3899 at 4639.550 kb on - strand at 4639.550 kb on - strand, within Psyr_3899 at 4639.550 kb on - strand, within Psyr_3899 at 4639.550 kb on - strand, within Psyr_3899
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nalidixic 12.5 ug/ml remove 4,637,587 + +0.4 4,637,588 - -0.9 4,637,704 + +1.0 4,637,705 - +0.6 4,637,766 + +0.0 4,637,784 + -0.6 4,637,784 + +0.0 4,637,785 - -0.2 4,637,785 - -1.1 4,637,789 + -1.4 4,637,789 + -0.6 4,637,789 + -0.5 4,637,789 + -0.2 4,637,789 + -1.0 4,637,789 + +0.0 4,637,789 + +0.2 4,637,789 + -0.6 4,637,789 + +1.3 4,637,789 + +0.1 4,637,789 + +0.0 4,637,789 + -0.8 4,637,789 + +0.0 4,637,789 + -0.7 4,637,789 + +0.6 4,637,789 + -1.4 4,637,789 + +0.1 4,637,789 + -0.8 4,637,789 + +0.3 4,637,789 + -0.7 4,637,789 + +0.5 4,637,789 + +0.2 4,637,789 + -0.6 4,637,789 + +1.2 4,637,789 + +0.3 4,637,789 + +0.0 4,637,789 + +0.0 4,637,790 - +0.8 4,637,790 - -2.0 4,637,790 - +1.6 4,637,790 - -2.3 4,637,790 - -0.6 4,637,790 - +1.0 4,637,790 - +0.0 4,637,790 - -1.0 4,637,790 - -1.9 4,637,790 - -2.0 4,637,790 - -0.8 4,637,790 - +1.6 4,637,790 - -0.6 4,637,790 - -1.2 4,637,790 - +0.6 4,637,790 - -0.1 4,637,790 - -0.9 4,637,790 - -1.0 4,637,790 - -0.6 4,637,790 - -1.0 4,637,790 - -1.7 4,637,790 - -0.8 4,637,790 - -1.6 4,637,790 - -0.8 4,637,790 - -0.6 4,637,790 - +0.6 4,637,790 - -1.5 4,637,790 - +0.0 4,637,790 - -1.2 4,637,790 - -0.5 4,637,790 - -1.2 4,637,790 - +0.5 4,637,790 - -0.5 4,637,790 - -3.3 4,637,790 - +1.6 4,637,790 - +0.2 4,637,793 + -2.4 4,637,793 + -0.1 4,637,793 + -0.1 4,637,793 + +0.2 4,637,793 + +1.0 4,637,793 + +1.8 4,637,793 + +0.5 4,637,793 + -1.6 4,637,793 + +0.1 4,637,793 + +1.2 4,637,793 + +0.3 4,637,793 + -0.6 4,637,793 + -0.2 4,637,793 + +0.8 4,637,793 + +2.3 4,637,793 + +1.0 4,637,794 - +1.0 4,637,794 - +0.0 4,637,794 - -1.4 4,637,794 - -1.4 4,637,794 - +0.5 4,637,794 - -1.3 4,637,794 - -0.7 4,637,794 - -1.2 4,637,794 - -0.9 4,637,794 - +0.0 4,637,794 - +1.4 4,637,794 - -0.6 4,637,794 - -1.0 4,637,794 - -0.8 4,637,794 - -2.2 4,637,794 - -0.5 4,637,794 - +0.0 4,637,794 - -2.3 4,637,863 - Psyr_3896 0.33 -0.6 4,637,897 + Psyr_3896 0.49 +0.2 4,637,898 - Psyr_3896 0.49 -1.3 4,638,051 - +0.3 4,638,058 + +0.4 4,638,059 - -1.1 4,638,122 - +1.4 4,638,122 - +0.4 4,638,136 + +0.2 4,638,153 + -2.0 4,638,177 + +0.3 4,638,177 + -0.1 4,638,177 + -0.3 4,638,177 + +1.0 4,638,177 + +1.0 4,638,177 + -0.0 4,638,177 + +1.9 4,638,177 + +1.0 4,638,177 + +0.0 4,638,177 + -0.6 4,638,177 + +0.8 4,638,177 + -0.8 4,638,178 - +0.1 4,638,178 - +0.0 4,638,178 - +1.3 4,638,178 - +0.2 4,638,178 - +0.7 4,638,178 - +0.8 4,638,178 - +0.3 4,638,178 - -0.5 4,638,178 - +1.0 4,638,178 - +0.6 4,638,179 + +0.1 4,638,179 + +0.7 4,638,179 + +1.0 4,638,179 + +2.6 4,638,179 + -0.3 4,638,179 + +0.4 4,638,179 + -2.2 4,638,179 + +0.4 4,638,179 + +0.2 4,638,179 + +0.4 4,638,180 - +0.9 4,638,180 - +1.0 4,638,180 - -1.7 4,638,180 - +0.0 4,638,181 + -0.7 4,638,181 + +1.1 4,638,181 + +0.1 4,638,181 + +0.9 4,638,181 + +1.2 4,638,181 + -1.3 4,638,181 + -1.6 4,638,181 + -2.2 4,638,181 + +0.5 4,638,181 + +0.7 4,638,182 - +0.0 4,638,182 - +0.0 4,638,182 - -0.6 4,638,182 - +1.2 4,638,182 - +0.2 4,638,282 - Psyr_3897 0.15 +1.0 4,638,282 - Psyr_3897 0.15 -0.1 4,638,282 - Psyr_3897 0.15 +0.5 4,638,282 - Psyr_3897 0.15 -0.1 4,638,302 + Psyr_3897 0.20 +0.3 4,638,302 + Psyr_3897 0.20 -0.1 4,638,302 + Psyr_3897 0.20 +0.6 4,638,302 + Psyr_3897 0.20 +0.2 4,638,302 + Psyr_3897 0.20 -1.1 4,638,303 - Psyr_3897 0.20 -0.2 4,638,303 - Psyr_3897 0.20 +1.7 4,638,303 - Psyr_3897 0.20 +0.2 4,638,341 + Psyr_3897 0.28 +0.3 4,638,341 + Psyr_3897 0.28 -0.2 4,638,341 + Psyr_3897 0.28 -0.4 4,638,343 + Psyr_3897 0.28 -1.4 4,638,343 + Psyr_3897 0.28 +0.9 4,638,343 + Psyr_3897 0.28 +2.7 4,638,343 + Psyr_3897 0.28 -1.8 4,638,344 - Psyr_3897 0.29 -0.6 4,638,344 - Psyr_3897 0.29 +2.2 4,638,344 - Psyr_3897 0.29 +0.8 4,638,344 - Psyr_3897 0.29 +0.5 4,638,344 - Psyr_3897 0.29 +0.7 4,638,344 - Psyr_3897 0.29 +0.3 4,638,368 + Psyr_3897 0.34 +0.4 4,638,368 + Psyr_3897 0.34 +0.7 4,638,368 + Psyr_3897 0.34 +0.8 4,638,368 + Psyr_3897 0.34 +0.0 4,638,368 + Psyr_3897 0.34 +2.5 4,638,369 - Psyr_3897 0.34 -0.4 4,638,639 + +2.2 4,638,639 + -0.1 4,638,639 + -0.3 4,638,639 + +0.7 4,638,640 - -1.6 4,638,640 - -0.7 4,638,640 - +0.8 4,638,640 - -0.7 4,638,653 + -0.2 4,638,653 + -0.4 4,638,653 + -2.2 4,638,654 - -3.7 4,638,654 - +1.3 4,638,654 - -0.1 4,638,654 - -0.9 4,638,654 - -2.8 4,638,742 + -0.2 4,638,743 - +0.3 4,638,743 - +0.4 4,638,808 - -0.9 4,639,152 - +0.7 4,639,549 + Psyr_3899 0.16 -0.2 4,639,549 + Psyr_3899 0.16 +0.3 4,639,549 + Psyr_3899 0.16 -1.3 4,639,550 - Psyr_3899 0.16 -0.2 4,639,550 - Psyr_3899 0.16 -1.0 4,639,550 - +1.6 4,639,550 - Psyr_3899 0.16 -0.6 4,639,550 - Psyr_3899 0.16 +1.6 4,639,550 - Psyr_3899 0.16 -0.9
Or see this region's nucleotide sequence