Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3856

Experiment: KB with Nalidixic 12.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3855 and Psyr_3856 are separated by 108 nucleotidesPsyr_3856 and Psyr_3857 are separated by 107 nucleotidesPsyr_3857 and Psyr_3858 are separated by 180 nucleotides Psyr_3855: Psyr_3855 - Beta-lactamase, at 4,594,240 to 4,595,388 _3855 Psyr_3856: Psyr_3856 - Helicase c2, at 4,595,497 to 4,597,641 _3856 Psyr_3857: Psyr_3857 - conserved hypothetical protein, at 4,597,749 to 4,598,213 _3857 Psyr_3858: Psyr_3858 - Nucleoside-specific channel-forming protein, Tsx, at 4,598,394 to 4,599,353 _3858 Position (kb) 4595 4596 4597 4598Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4594.565 kb on + strand, within Psyr_3855at 4594.565 kb on + strand, within Psyr_3855at 4594.566 kb on - strand, within Psyr_3855at 4594.566 kb on - strand, within Psyr_3855at 4594.907 kb on + strand, within Psyr_3855at 4594.907 kb on + strand, within Psyr_3855at 4594.907 kb on + strand, within Psyr_3855at 4594.907 kb on + strand, within Psyr_3855at 4594.908 kb on - strand, within Psyr_3855at 4594.908 kb on - strand, within Psyr_3855at 4594.908 kb on - strand, within Psyr_3855at 4595.070 kb on + strand, within Psyr_3855at 4595.206 kb on - strand, within Psyr_3855at 4595.206 kb on - strand, within Psyr_3855at 4595.206 kb on - strand, within Psyr_3855at 4595.347 kb on + strandat 4595.347 kb on + strandat 4595.347 kb on + strandat 4595.347 kb on + strandat 4595.348 kb on - strandat 4595.348 kb on - strandat 4595.370 kb on - strandat 4595.503 kb on + strandat 4595.503 kb on + strandat 4595.503 kb on + strandat 4595.503 kb on + strandat 4595.504 kb on - strandat 4595.824 kb on + strand, within Psyr_3856at 4595.825 kb on - strand, within Psyr_3856at 4595.825 kb on - strand, within Psyr_3856at 4595.825 kb on - strand, within Psyr_3856at 4595.967 kb on - strand, within Psyr_3856at 4595.967 kb on - strand, within Psyr_3856at 4595.967 kb on - strand, within Psyr_3856at 4596.869 kb on + strand, within Psyr_3856at 4596.869 kb on + strand, within Psyr_3856at 4596.869 kb on + strand, within Psyr_3856at 4596.869 kb on + strand, within Psyr_3856at 4596.869 kb on + strand, within Psyr_3856at 4596.869 kb on + strand, within Psyr_3856at 4596.869 kb on + strand, within Psyr_3856at 4596.869 kb on + strand, within Psyr_3856at 4596.870 kb on - strand, within Psyr_3856at 4596.870 kb on - strand, within Psyr_3856at 4596.870 kb on - strand, within Psyr_3856at 4596.870 kb on - strand, within Psyr_3856at 4596.870 kb on - strand, within Psyr_3856at 4596.986 kb on + strand, within Psyr_3856at 4596.986 kb on + strand, within Psyr_3856at 4596.986 kb on + strand, within Psyr_3856at 4596.986 kb on + strand, within Psyr_3856at 4596.986 kb on + strand, within Psyr_3856at 4596.986 kb on + strand, within Psyr_3856at 4596.986 kb on + strand, within Psyr_3856at 4596.986 kb on + strand, within Psyr_3856at 4596.986 kb on + strand, within Psyr_3856at 4596.987 kb on - strand, within Psyr_3856at 4596.987 kb on - strand, within Psyr_3856at 4596.987 kb on - strand, within Psyr_3856at 4596.987 kb on - strand, within Psyr_3856at 4596.987 kb on - strand, within Psyr_3856at 4596.987 kb on - strand, within Psyr_3856at 4596.987 kb on - strand, within Psyr_3856at 4596.987 kb on - strand, within Psyr_3856at 4596.987 kb on - strand, within Psyr_3856at 4597.262 kb on + strand, within Psyr_3856at 4597.262 kb on + strand, within Psyr_3856at 4597.262 kb on + strand, within Psyr_3856at 4597.263 kb on - strand, within Psyr_3856at 4597.263 kb on - strand, within Psyr_3856at 4597.263 kb on - strand, within Psyr_3856at 4597.263 kb on - strand, within Psyr_3856at 4597.263 kb on - strand, within Psyr_3856at 4597.263 kb on - strand, within Psyr_3856at 4597.337 kb on + strand, within Psyr_3856at 4597.338 kb on - strand, within Psyr_3856at 4597.427 kb on + strandat 4597.720 kb on - strandat 4597.764 kb on - strandat 4597.770 kb on + strandat 4597.770 kb on + strandat 4597.770 kb on + strandat 4597.770 kb on + strandat 4597.770 kb on + strandat 4597.771 kb on - strandat 4597.771 kb on - strandat 4597.772 kb on + strandat 4597.772 kb on + strandat 4597.772 kb on + strandat 4597.772 kb on + strandat 4597.772 kb on + strandat 4597.772 kb on + strandat 4597.772 kb on + strandat 4597.772 kb on + strandat 4597.772 kb on + strandat 4597.773 kb on - strandat 4597.773 kb on - strandat 4597.773 kb on - strandat 4597.773 kb on - strandat 4597.773 kb on - strandat 4597.773 kb on - strandat 4597.773 kb on - strandat 4597.773 kb on - strandat 4597.773 kb on - strandat 4597.773 kb on - strandat 4597.773 kb on - strandat 4597.773 kb on - strandat 4597.773 kb on - strandat 4597.773 kb on - strandat 4597.773 kb on - strandat 4597.773 kb on - strandat 4597.773 kb on - strandat 4597.773 kb on - strandat 4597.773 kb on - strandat 4597.773 kb on - strandat 4597.773 kb on - strandat 4597.773 kb on - strandat 4598.001 kb on + strand, within Psyr_3857at 4598.001 kb on + strand, within Psyr_3857at 4598.001 kb on + strand, within Psyr_3857at 4598.002 kb on - strand, within Psyr_3857at 4598.025 kb on + strand, within Psyr_3857at 4598.026 kb on - strand, within Psyr_3857at 4598.026 kb on - strand, within Psyr_3857at 4598.216 kb on + strandat 4598.305 kb on - strandat 4598.564 kb on + strand, within Psyr_3858at 4598.565 kb on - strand, within Psyr_3858at 4598.565 kb on - strand, within Psyr_3858at 4598.575 kb on - strand, within Psyr_3858

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nalidixic 12.5 ug/ml
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4,594,565 + Psyr_3855 0.28 +2.0
4,594,565 + Psyr_3855 0.28 +0.0
4,594,566 - Psyr_3855 0.28 -0.3
4,594,566 - Psyr_3855 0.28 +0.0
4,594,907 + Psyr_3855 0.58 -0.6
4,594,907 + Psyr_3855 0.58 -0.9
4,594,907 + Psyr_3855 0.58 +0.0
4,594,907 + Psyr_3855 0.58 +1.4
4,594,908 - Psyr_3855 0.58 +0.0
4,594,908 - Psyr_3855 0.58 -0.4
4,594,908 - Psyr_3855 0.58 +0.8
4,595,070 + Psyr_3855 0.72 +0.6
4,595,206 - Psyr_3855 0.84 -0.5
4,595,206 - Psyr_3855 0.84 +0.3
4,595,206 - Psyr_3855 0.84 -0.6
4,595,347 + -1.0
4,595,347 + -0.2
4,595,347 + -0.8
4,595,347 + +0.4
4,595,348 - -0.7
4,595,348 - +0.8
4,595,370 - -0.4
4,595,503 + +0.8
4,595,503 + +0.5
4,595,503 + +0.0
4,595,503 + +0.8
4,595,504 - -1.8
4,595,824 + Psyr_3856 0.15 +0.6
4,595,825 - Psyr_3856 0.15 +1.0
4,595,825 - Psyr_3856 0.15 +1.2
4,595,825 - Psyr_3856 0.15 +0.1
4,595,967 - Psyr_3856 0.22 +0.7
4,595,967 - Psyr_3856 0.22 +2.0
4,595,967 - Psyr_3856 0.22 +1.3
4,596,869 + Psyr_3856 0.64 +0.9
4,596,869 + Psyr_3856 0.64 +1.3
4,596,869 + Psyr_3856 0.64 +1.4
4,596,869 + Psyr_3856 0.64 +0.2
4,596,869 + Psyr_3856 0.64 +1.1
4,596,869 + Psyr_3856 0.64 +1.3
4,596,869 + Psyr_3856 0.64 +0.3
4,596,869 + Psyr_3856 0.64 +0.6
4,596,870 - Psyr_3856 0.64 +1.2
4,596,870 - Psyr_3856 0.64 +1.7
4,596,870 - Psyr_3856 0.64 +1.0
4,596,870 - Psyr_3856 0.64 +1.2
4,596,870 - Psyr_3856 0.64 +1.3
4,596,986 + Psyr_3856 0.69 +0.6
4,596,986 + Psyr_3856 0.69 -1.0
4,596,986 + Psyr_3856 0.69 +2.0
4,596,986 + Psyr_3856 0.69 +1.0
4,596,986 + Psyr_3856 0.69 +1.7
4,596,986 + Psyr_3856 0.69 +1.7
4,596,986 + Psyr_3856 0.69 +0.5
4,596,986 + Psyr_3856 0.69 +0.7
4,596,986 + Psyr_3856 0.69 +0.8
4,596,987 - Psyr_3856 0.69 +0.8
4,596,987 - Psyr_3856 0.69 +0.7
4,596,987 - Psyr_3856 0.69 +1.4
4,596,987 - Psyr_3856 0.69 +1.2
4,596,987 - Psyr_3856 0.69 +1.2
4,596,987 - Psyr_3856 0.69 +0.4
4,596,987 - Psyr_3856 0.69 +1.0
4,596,987 - Psyr_3856 0.69 +1.8
4,596,987 - Psyr_3856 0.69 -2.0
4,597,262 + Psyr_3856 0.82 +3.0
4,597,262 + Psyr_3856 0.82 +1.4
4,597,262 + Psyr_3856 0.82 +1.3
4,597,263 - Psyr_3856 0.82 -0.2
4,597,263 - Psyr_3856 0.82 +1.5
4,597,263 - Psyr_3856 0.82 -0.2
4,597,263 - Psyr_3856 0.82 +2.1
4,597,263 - Psyr_3856 0.82 -2.7
4,597,263 - Psyr_3856 0.82 +1.0
4,597,337 + Psyr_3856 0.86 -1.6
4,597,338 - Psyr_3856 0.86 +0.5
4,597,427 + +1.4
4,597,720 - -0.9
4,597,764 - -1.2
4,597,770 + +1.9
4,597,770 + +1.6
4,597,770 + +1.0
4,597,770 + -0.4
4,597,770 + -0.3
4,597,771 - -0.6
4,597,771 - +0.4
4,597,772 + -0.6
4,597,772 + +0.0
4,597,772 + +1.4
4,597,772 + +0.4
4,597,772 + +0.3
4,597,772 + -2.0
4,597,772 + +0.4
4,597,772 + +0.4
4,597,772 + +1.3
4,597,773 - -0.3
4,597,773 - -0.6
4,597,773 - +1.0
4,597,773 - +0.0
4,597,773 - +0.2
4,597,773 - +0.6
4,597,773 - +0.0
4,597,773 - -1.4
4,597,773 - +1.0
4,597,773 - +0.2
4,597,773 - -1.6
4,597,773 - -1.0
4,597,773 - -1.1
4,597,773 - -1.1
4,597,773 - -0.8
4,597,773 - +0.3
4,597,773 - -0.7
4,597,773 - -0.7
4,597,773 - +0.1
4,597,773 - +0.8
4,597,773 - +0.5
4,597,773 - -1.0
4,598,001 + Psyr_3857 0.54 +1.0
4,598,001 + Psyr_3857 0.54 +0.7
4,598,001 + Psyr_3857 0.54 -1.1
4,598,002 - Psyr_3857 0.54 -0.3
4,598,025 + Psyr_3857 0.59 -1.3
4,598,026 - Psyr_3857 0.60 -1.6
4,598,026 - Psyr_3857 0.60 -2.1
4,598,216 + -1.8
4,598,305 - -1.3
4,598,564 + Psyr_3858 0.18 -0.4
4,598,565 - Psyr_3858 0.18 -0.6
4,598,565 - Psyr_3858 0.18 +3.0
4,598,575 - Psyr_3858 0.19 -0.6

Or see this region's nucleotide sequence