Experiment: KB with Nalidixic 12.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3837 and Psyr_3838 are separated by 185 nucleotides Psyr_3838 and Psyr_3839 are separated by 171 nucleotides Psyr_3839 and Psyr_3840 are separated by 218 nucleotides Psyr_3840 and Psyr_3841 are separated by 100 nucleotides
Psyr_3837: Psyr_3837 - conserved hypothetical protein, at 4,573,611 to 4,573,754
_3837
Psyr_3838: Psyr_3838 - MaoC-like dehydratase, at 4,573,940 to 4,574,410
_3838
Psyr_3839: Psyr_3839 - type III helper protein HopAK1, at 4,574,582 to 4,576,213
_3839
Psyr_3840: Psyr_3840 - conserved hypothetical protein, at 4,576,432 to 4,576,590
_3840
Psyr_3841: Psyr_3841 - conserved hypothetical protein, at 4,576,691 to 4,577,032
_3841
Position (kb) 4574
4575
4576
4577 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4573.595 kb on + strand at 4573.595 kb on + strand at 4573.595 kb on + strand at 4573.595 kb on + strand at 4573.595 kb on + strand at 4573.595 kb on + strand at 4573.596 kb on - strand at 4573.596 kb on - strand at 4573.596 kb on - strand at 4573.596 kb on - strand at 4573.596 kb on - strand at 4573.596 kb on - strand at 4573.596 kb on - strand at 4573.596 kb on - strand at 4573.619 kb on + strand at 4573.620 kb on - strand at 4573.620 kb on - strand at 4573.637 kb on + strand, within Psyr_3837 at 4573.637 kb on + strand, within Psyr_3837 at 4573.638 kb on - strand, within Psyr_3837 at 4573.705 kb on - strand, within Psyr_3837 at 4573.755 kb on + strand at 4573.755 kb on + strand at 4573.755 kb on + strand at 4573.755 kb on + strand at 4573.756 kb on - strand at 4573.756 kb on - strand at 4573.756 kb on - strand at 4573.761 kb on + strand at 4573.762 kb on - strand at 4573.762 kb on - strand at 4573.762 kb on - strand at 4573.762 kb on - strand at 4573.780 kb on + strand at 4573.780 kb on + strand at 4573.783 kb on + strand at 4573.783 kb on + strand at 4573.783 kb on + strand at 4573.784 kb on - strand at 4573.784 kb on - strand at 4573.784 kb on - strand at 4574.588 kb on - strand at 4574.603 kb on + strand at 4574.603 kb on + strand at 4574.603 kb on + strand at 4574.603 kb on + strand at 4574.603 kb on + strand at 4574.603 kb on + strand at 4574.603 kb on + strand at 4574.603 kb on + strand at 4574.603 kb on + strand at 4574.603 kb on + strand at 4574.604 kb on - strand at 4574.604 kb on - strand at 4574.604 kb on - strand at 4574.604 kb on - strand at 4574.695 kb on + strand at 4574.696 kb on - strand at 4574.696 kb on - strand at 4574.696 kb on - strand at 4574.696 kb on - strand at 4574.804 kb on - strand, within Psyr_3839 at 4574.830 kb on - strand, within Psyr_3839 at 4574.830 kb on - strand, within Psyr_3839 at 4574.898 kb on + strand, within Psyr_3839 at 4574.898 kb on + strand, within Psyr_3839 at 4574.898 kb on + strand, within Psyr_3839 at 4574.899 kb on - strand, within Psyr_3839 at 4574.899 kb on - strand, within Psyr_3839 at 4575.076 kb on + strand, within Psyr_3839 at 4575.076 kb on + strand, within Psyr_3839 at 4575.077 kb on - strand, within Psyr_3839 at 4575.242 kb on - strand, within Psyr_3839 at 4575.395 kb on + strand, within Psyr_3839 at 4575.395 kb on + strand, within Psyr_3839 at 4575.395 kb on + strand, within Psyr_3839 at 4575.395 kb on + strand, within Psyr_3839 at 4575.395 kb on + strand, within Psyr_3839 at 4575.395 kb on + strand, within Psyr_3839 at 4575.396 kb on - strand, within Psyr_3839 at 4575.396 kb on - strand, within Psyr_3839 at 4575.396 kb on - strand, within Psyr_3839 at 4575.396 kb on - strand, within Psyr_3839 at 4575.396 kb on - strand, within Psyr_3839 at 4575.396 kb on - strand, within Psyr_3839 at 4575.396 kb on - strand, within Psyr_3839 at 4575.396 kb on - strand, within Psyr_3839 at 4575.396 kb on - strand, within Psyr_3839 at 4575.396 kb on - strand, within Psyr_3839 at 4575.396 kb on - strand, within Psyr_3839 at 4575.396 kb on - strand, within Psyr_3839 at 4575.396 kb on - strand, within Psyr_3839 at 4575.527 kb on + strand, within Psyr_3839 at 4575.527 kb on + strand, within Psyr_3839 at 4575.527 kb on + strand, within Psyr_3839 at 4575.527 kb on + strand, within Psyr_3839 at 4575.528 kb on - strand, within Psyr_3839 at 4575.528 kb on - strand, within Psyr_3839 at 4575.528 kb on - strand, within Psyr_3839 at 4575.528 kb on - strand, within Psyr_3839 at 4575.528 kb on - strand, within Psyr_3839 at 4575.528 kb on - strand, within Psyr_3839 at 4575.665 kb on + strand, within Psyr_3839 at 4575.665 kb on + strand, within Psyr_3839 at 4575.665 kb on + strand, within Psyr_3839 at 4575.666 kb on - strand, within Psyr_3839 at 4575.666 kb on - strand, within Psyr_3839 at 4575.666 kb on - strand, within Psyr_3839 at 4575.666 kb on - strand, within Psyr_3839 at 4575.713 kb on + strand, within Psyr_3839 at 4575.713 kb on + strand, within Psyr_3839 at 4575.713 kb on + strand, within Psyr_3839 at 4575.713 kb on + strand, within Psyr_3839 at 4575.713 kb on + strand, within Psyr_3839 at 4575.713 kb on + strand, within Psyr_3839 at 4575.713 kb on + strand, within Psyr_3839 at 4575.714 kb on - strand, within Psyr_3839 at 4575.714 kb on - strand, within Psyr_3839 at 4575.714 kb on - strand, within Psyr_3839 at 4575.714 kb on - strand, within Psyr_3839 at 4575.714 kb on - strand, within Psyr_3839 at 4575.714 kb on - strand, within Psyr_3839 at 4575.714 kb on - strand, within Psyr_3839 at 4575.714 kb on - strand, within Psyr_3839 at 4575.714 kb on - strand, within Psyr_3839 at 4575.755 kb on - strand, within Psyr_3839 at 4575.755 kb on - strand, within Psyr_3839 at 4575.824 kb on + strand, within Psyr_3839 at 4575.824 kb on + strand, within Psyr_3839 at 4575.825 kb on - strand, within Psyr_3839 at 4575.825 kb on - strand, within Psyr_3839 at 4575.995 kb on + strand, within Psyr_3839 at 4575.995 kb on + strand, within Psyr_3839 at 4575.995 kb on + strand, within Psyr_3839 at 4575.995 kb on + strand, within Psyr_3839 at 4575.995 kb on + strand, within Psyr_3839 at 4575.995 kb on + strand, within Psyr_3839 at 4575.995 kb on + strand, within Psyr_3839 at 4575.996 kb on - strand, within Psyr_3839 at 4575.996 kb on - strand, within Psyr_3839 at 4575.996 kb on - strand, within Psyr_3839 at 4576.055 kb on + strand at 4576.056 kb on - strand at 4576.137 kb on - strand at 4576.137 kb on - strand at 4576.175 kb on + strand at 4576.350 kb on - strand at 4576.393 kb on + strand at 4576.444 kb on - strand at 4576.504 kb on + strand, within Psyr_3840 at 4576.504 kb on + strand, within Psyr_3840 at 4576.504 kb on + strand, within Psyr_3840 at 4576.505 kb on - strand, within Psyr_3840 at 4576.505 kb on - strand, within Psyr_3840 at 4576.505 kb on - strand, within Psyr_3840 at 4576.505 kb on - strand, within Psyr_3840 at 4576.505 kb on - strand, within Psyr_3840 at 4576.505 kb on - strand, within Psyr_3840 at 4576.540 kb on - strand, within Psyr_3840 at 4576.628 kb on - strand at 4576.891 kb on + strand, within Psyr_3841 at 4576.892 kb on - strand, within Psyr_3841 at 4576.892 kb on - strand, within Psyr_3841 at 4577.020 kb on + strand at 4577.020 kb on + strand at 4577.020 kb on + strand at 4577.020 kb on + strand at 4577.020 kb on + strand at 4577.020 kb on + strand at 4577.020 kb on + strand at 4577.020 kb on + strand at 4577.020 kb on + strand at 4577.020 kb on + strand at 4577.021 kb on - strand at 4577.021 kb on - strand at 4577.021 kb on - strand at 4577.021 kb on - strand at 4577.021 kb on - strand at 4577.021 kb on - strand at 4577.021 kb on - strand at 4577.021 kb on - strand at 4577.038 kb on + strand at 4577.039 kb on - strand at 4577.101 kb on + strand at 4577.109 kb on + strand at 4577.109 kb on + strand at 4577.110 kb on - strand at 4577.111 kb on + strand at 4577.111 kb on + strand at 4577.111 kb on + strand at 4577.112 kb on - strand at 4577.112 kb on - strand at 4577.112 kb on - strand at 4577.141 kb on + strand at 4577.141 kb on + strand at 4577.141 kb on + strand at 4577.142 kb on - strand at 4577.142 kb on - strand at 4577.142 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nalidixic 12.5 ug/ml remove 4,573,595 + -1.8 4,573,595 + -1.3 4,573,595 + +0.3 4,573,595 + -0.3 4,573,595 + +0.0 4,573,595 + +0.0 4,573,596 - -0.2 4,573,596 - -0.4 4,573,596 - -1.4 4,573,596 - +0.9 4,573,596 - +2.3 4,573,596 - -0.5 4,573,596 - +1.0 4,573,596 - +0.6 4,573,619 + -0.6 4,573,620 - +0.3 4,573,620 - -0.6 4,573,637 + Psyr_3837 0.18 +0.3 4,573,637 + Psyr_3837 0.18 +1.3 4,573,638 - Psyr_3837 0.19 +1.5 4,573,705 - Psyr_3837 0.65 -0.1 4,573,755 + -0.2 4,573,755 + -0.6 4,573,755 + -0.3 4,573,755 + +0.4 4,573,756 - -0.2 4,573,756 - -0.5 4,573,756 - +1.0 4,573,761 + +0.6 4,573,762 - +1.5 4,573,762 - -0.8 4,573,762 - -1.0 4,573,762 - +0.1 4,573,780 + +1.3 4,573,780 + -1.0 4,573,783 + +1.4 4,573,783 + -0.4 4,573,783 + -1.8 4,573,784 - +1.3 4,573,784 - -0.5 4,573,784 - +0.0 4,574,588 - -0.6 4,574,603 + -0.8 4,574,603 + -2.2 4,574,603 + -0.6 4,574,603 + +0.2 4,574,603 + -1.1 4,574,603 + +0.8 4,574,603 + -0.4 4,574,603 + -0.4 4,574,603 + +0.4 4,574,603 + +0.0 4,574,604 - +0.5 4,574,604 - +0.2 4,574,604 - -1.8 4,574,604 - -0.2 4,574,695 + -0.6 4,574,696 - +0.9 4,574,696 - +0.5 4,574,696 - +1.5 4,574,696 - -1.5 4,574,804 - Psyr_3839 0.14 +0.2 4,574,830 - Psyr_3839 0.15 -0.8 4,574,830 - Psyr_3839 0.15 +0.4 4,574,898 + Psyr_3839 0.19 -0.6 4,574,898 + Psyr_3839 0.19 -2.9 4,574,898 + Psyr_3839 0.19 -2.3 4,574,899 - Psyr_3839 0.19 -0.0 4,574,899 - Psyr_3839 0.19 +0.2 4,575,076 + Psyr_3839 0.30 -0.5 4,575,076 + Psyr_3839 0.30 +0.3 4,575,077 - Psyr_3839 0.30 +1.6 4,575,242 - Psyr_3839 0.40 +0.2 4,575,395 + Psyr_3839 0.50 -2.4 4,575,395 + Psyr_3839 0.50 -1.3 4,575,395 + Psyr_3839 0.50 +0.0 4,575,395 + Psyr_3839 0.50 -1.0 4,575,395 + Psyr_3839 0.50 -1.8 4,575,395 + Psyr_3839 0.50 -0.3 4,575,396 - Psyr_3839 0.50 +0.4 4,575,396 - Psyr_3839 0.50 -0.3 4,575,396 - Psyr_3839 0.50 +0.5 4,575,396 - Psyr_3839 0.50 -0.4 4,575,396 - Psyr_3839 0.50 +2.4 4,575,396 - Psyr_3839 0.50 +0.0 4,575,396 - Psyr_3839 0.50 +0.3 4,575,396 - Psyr_3839 0.50 -0.8 4,575,396 - Psyr_3839 0.50 +0.1 4,575,396 - Psyr_3839 0.50 +0.6 4,575,396 - Psyr_3839 0.50 +0.4 4,575,396 - Psyr_3839 0.50 -0.1 4,575,396 - Psyr_3839 0.50 -0.4 4,575,527 + Psyr_3839 0.58 +0.0 4,575,527 + Psyr_3839 0.58 +0.8 4,575,527 + Psyr_3839 0.58 -0.8 4,575,527 + Psyr_3839 0.58 -0.9 4,575,528 - Psyr_3839 0.58 +0.4 4,575,528 - Psyr_3839 0.58 +1.0 4,575,528 - Psyr_3839 0.58 +0.2 4,575,528 - Psyr_3839 0.58 +0.5 4,575,528 - Psyr_3839 0.58 +1.2 4,575,528 - Psyr_3839 0.58 +0.0 4,575,665 + Psyr_3839 0.66 +0.6 4,575,665 + Psyr_3839 0.66 +0.2 4,575,665 + Psyr_3839 0.66 -2.2 4,575,666 - Psyr_3839 0.66 -1.4 4,575,666 - Psyr_3839 0.66 -0.9 4,575,666 - Psyr_3839 0.66 -2.2 4,575,666 - Psyr_3839 0.66 -0.9 4,575,713 + Psyr_3839 0.69 -0.9 4,575,713 + Psyr_3839 0.69 +1.0 4,575,713 + Psyr_3839 0.69 +1.6 4,575,713 + Psyr_3839 0.69 -0.6 4,575,713 + Psyr_3839 0.69 -1.2 4,575,713 + Psyr_3839 0.69 -0.9 4,575,713 + Psyr_3839 0.69 -2.7 4,575,714 - Psyr_3839 0.69 -2.6 4,575,714 - Psyr_3839 0.69 -0.5 4,575,714 - Psyr_3839 0.69 +0.4 4,575,714 - Psyr_3839 0.69 +1.3 4,575,714 - Psyr_3839 0.69 +0.4 4,575,714 - Psyr_3839 0.69 +0.2 4,575,714 - Psyr_3839 0.69 -0.2 4,575,714 - Psyr_3839 0.69 -0.8 4,575,714 - Psyr_3839 0.69 +1.2 4,575,755 - Psyr_3839 0.72 +0.4 4,575,755 - Psyr_3839 0.72 +0.0 4,575,824 + Psyr_3839 0.76 -1.4 4,575,824 + Psyr_3839 0.76 -0.6 4,575,825 - Psyr_3839 0.76 +0.6 4,575,825 - Psyr_3839 0.76 +0.8 4,575,995 + Psyr_3839 0.87 +0.1 4,575,995 + Psyr_3839 0.87 -0.5 4,575,995 + Psyr_3839 0.87 +0.2 4,575,995 + Psyr_3839 0.87 +0.4 4,575,995 + Psyr_3839 0.87 -0.6 4,575,995 + Psyr_3839 0.87 -1.6 4,575,995 + Psyr_3839 0.87 +0.7 4,575,996 - Psyr_3839 0.87 -0.3 4,575,996 - Psyr_3839 0.87 +0.0 4,575,996 - Psyr_3839 0.87 -0.7 4,576,055 + +0.7 4,576,056 - -1.3 4,576,137 - +0.1 4,576,137 - -0.6 4,576,175 + +0.8 4,576,350 - -0.4 4,576,393 + -0.6 4,576,444 - -0.4 4,576,504 + Psyr_3840 0.45 +1.0 4,576,504 + Psyr_3840 0.45 -0.7 4,576,504 + Psyr_3840 0.45 -1.6 4,576,505 - Psyr_3840 0.46 -0.6 4,576,505 - Psyr_3840 0.46 -0.4 4,576,505 - Psyr_3840 0.46 -0.1 4,576,505 - Psyr_3840 0.46 -0.6 4,576,505 - Psyr_3840 0.46 -2.8 4,576,505 - Psyr_3840 0.46 -0.8 4,576,540 - Psyr_3840 0.68 +0.4 4,576,628 - -0.2 4,576,891 + Psyr_3841 0.58 -0.1 4,576,892 - Psyr_3841 0.59 -1.7 4,576,892 - Psyr_3841 0.59 -1.0 4,577,020 + -0.1 4,577,020 + -0.6 4,577,020 + +1.0 4,577,020 + +1.3 4,577,020 + +0.0 4,577,020 + -1.8 4,577,020 + -2.4 4,577,020 + +0.6 4,577,020 + +1.0 4,577,020 + +0.6 4,577,021 - +0.0 4,577,021 - +0.0 4,577,021 - -0.8 4,577,021 - -0.1 4,577,021 - +1.4 4,577,021 - -0.8 4,577,021 - -0.9 4,577,021 - +0.0 4,577,038 + -1.3 4,577,039 - -1.4 4,577,101 + -0.8 4,577,109 + -1.8 4,577,109 + +0.8 4,577,110 - -1.4 4,577,111 + -0.3 4,577,111 + +0.5 4,577,111 + -1.5 4,577,112 - +0.3 4,577,112 - -0.6 4,577,112 - -0.6 4,577,141 + -0.7 4,577,141 + +0.3 4,577,141 + +1.3 4,577,142 - -2.4 4,577,142 - -1.7 4,577,142 - -1.0
Or see this region's nucleotide sequence