Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3733

Experiment: KB with Nalidixic 12.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Nalidixic 12.5 ug/ml
4,439,326	+		Psyr_3731	0.81	+0.8
4,439,326	+		Psyr_3731	0.81	-1.3
4,439,326	+		Psyr_3731	0.81	+1.1
4,439,327	-		Psyr_3731	0.81	+0.5
4,439,327	-		Psyr_3731	0.81	+0.3
4,439,327	-		Psyr_3731	0.81	-0.1
4,439,352	+		Psyr_3731	0.83	-1.3
4,439,352	+		Psyr_3731	0.83	+0.2
4,439,352	+		Psyr_3731	0.83	+0.9
4,439,352	+		Psyr_3731	0.83	+0.7
4,439,352	+		Psyr_3731	0.83	+1.1
4,439,353	-		Psyr_3731	0.83	-0.7
4,439,353	-		Psyr_3731	0.83	-1.5
4,439,387	-		Psyr_3731	0.86	+0.7
4,439,539	+				-1.2
4,439,540	-				-0.3
4,439,603	+				+0.3
4,439,625	-				-1.5
4,439,797	+				+1.3
4,439,797	+				-1.5
4,439,797	+				-1.3
4,439,797	+				-1.3
4,439,797	+				-1.2
4,439,797	+				-0.2
4,439,797	+				+0.8
4,439,797	+				-0.5
4,439,797	+				-0.4
4,439,797	+				+1.3
4,439,797	+				+1.2
4,439,798	-				+0.4
4,439,798	-				+1.1
4,439,798	-				-0.5
4,439,798	-				-0.3
4,439,798	-				-1.3
4,439,798	-				-0.8
4,439,798	-				-0.9
4,439,798	-				-0.3
4,439,798	-				-0.3
4,439,798	-				+0.3
4,439,798	-				-0.0
4,439,798	-				-2.7
4,439,798	-				-0.3
4,439,798	-				-2.5
4,439,798	-				-0.1
4,439,799	+				-0.6
4,439,799	+				+0.8
4,439,800	-				-0.0
4,439,801	+				+0.3
4,439,801	+				-0.4
4,439,801	+				-0.1
4,439,801	+				+1.7
4,439,801	+				+0.1
4,439,801	+				-0.8
4,439,802	-				-1.7
4,439,802	-				+0.7
4,439,802	-				-1.7
4,439,802	-				-1.7
4,439,802	-				-1.2
4,439,802	-				-0.5
4,439,837	-				-0.2
4,439,837	-				-1.0
4,439,861	+				+0.2
4,440,169	+				-1.8
4,440,169	+				+3.2
4,440,170	-				-0.8
4,440,170	-				+0.8
4,440,170	-				+0.2
4,440,178	-				+0.5
4,440,178	-				+1.2
4,440,192	+				-0.3
4,440,192	+				+0.5
4,440,284	+				-0.3
4,440,285	-				-0.1
4,440,285	-				+0.1
4,440,373	+				+1.1
4,440,373	+				-1.7
4,440,373	+				+0.3
4,440,373	+				+1.8
4,440,374	-				+0.9
4,440,374	-				+0.1
4,440,374	-				-1.5
4,440,374	-				-0.3
4,440,374	-				-0.1
4,440,374	-				+0.9
4,440,374	-				-0.2
4,440,374	-				-0.4
4,440,374	-				+0.4
4,440,611	+		Psyr_3733	0.13	+0.7
4,440,611	+		Psyr_3733	0.13	-0.3
4,440,611	+		Psyr_3733	0.13	+1.3
4,440,612	-		Psyr_3733	0.13	+0.5
4,440,612	-		Psyr_3733	0.13	+0.8
4,440,821	+		Psyr_3733	0.19	-0.6
4,440,836	+		Psyr_3733	0.20	-1.1
4,440,836	+		Psyr_3733	0.20	-0.9
4,440,837	-		Psyr_3733	0.20	-0.9
4,441,073	+		Psyr_3733	0.27	+1.9
4,441,074	-		Psyr_3733	0.27	-1.5
4,441,320	+		Psyr_3733	0.35	-0.5
4,441,320	+		Psyr_3733	0.35	+0.9
4,441,321	-		Psyr_3733	0.35	+0.7
4,441,355	+		Psyr_3733	0.37	+0.1
4,441,355	+		Psyr_3733	0.37	+0.1
4,441,355	+		Psyr_3733	0.37	-0.2
4,441,355	+		Psyr_3733	0.37	+0.3
4,441,355	+		Psyr_3733	0.37	+1.1
4,441,356	-		Psyr_3733	0.37	+0.5
4,441,356	-		Psyr_3733	0.37	+0.4
4,441,356	-		Psyr_3733	0.37	+1.9
4,441,356	-		Psyr_3733	0.37	-2.7
4,441,382	+		Psyr_3733	0.37	+0.7
4,441,382	+		Psyr_3733	0.37	-0.5
4,441,382	+		Psyr_3733	0.37	-1.3
4,441,383	-		Psyr_3733	0.37	-0.6
4,441,383	-		Psyr_3733	0.37	-0.6
4,441,383	-		Psyr_3733	0.37	-1.3
4,441,383	-		Psyr_3733	0.37	-0.9
4,441,476	+		Psyr_3733	0.40	-0.2
4,441,558	-		Psyr_3733	0.43	+1.9
4,441,592	+		Psyr_3733	0.44	+0.3
4,441,593	-		Psyr_3733	0.44	-0.7
4,441,799	+		Psyr_3733	0.51	-0.7
4,441,799	+		Psyr_3733	0.51	-0.7
4,441,799	+		Psyr_3733	0.51	+0.7
4,441,800	-		Psyr_3733	0.51	+0.1
4,441,800	-		Psyr_3733	0.51	-1.7
4,442,085	-		Psyr_3733	0.60	-0.2
4,442,162	+		Psyr_3733	0.62	-0.3
4,442,163	-		Psyr_3733	0.62	-0.6
4,442,163	-		Psyr_3733	0.62	+0.5
4,442,288	+		Psyr_3733	0.66	-0.3
4,442,288	+		Psyr_3733	0.66	+0.8
4,442,288	+		Psyr_3733	0.66	-0.2
4,442,288	+		Psyr_3733	0.66	-0.5
4,442,288	+		Psyr_3733	0.66	+0.7
4,442,289	-		Psyr_3733	0.66	+0.7
4,442,331	-		Psyr_3733	0.68	+0.7
4,442,364	-		Psyr_3733	0.69	-1.8
4,442,364	-		Psyr_3733	0.69	+0.7
4,442,489	+		Psyr_3733	0.73	-0.3
4,442,489	+		Psyr_3733	0.73	-1.1
4,442,489	+		Psyr_3733	0.73	+2.7
4,442,552	+		Psyr_3733	0.75	+1.7
4,442,741	+		Psyr_3733	0.81	+0.1
4,442,741	+		Psyr_3733	0.81	-1.0
4,442,741	+		Psyr_3733	0.81	+0.1
4,442,822	+		Psyr_3733	0.84	+0.1
4,442,822	+		Psyr_3733	0.84	+0.5
4,442,823	-		Psyr_3733	0.84	-0.8
4,442,966	+		Psyr_3733	0.88	+1.7
4,442,966	+		Psyr_3733	0.88	-0.4
4,442,978	+		Psyr_3733	0.89	-0.8
4,443,010	+		Psyr_3733	0.90	+0.3
4,443,011	-		Psyr_3733	0.90	-1.3
4,443,047	+				-0.7
4,443,093	-				-0.9
4,443,104	+				+0.2
4,443,104	+				+0.1
4,443,105	-				+0.3
4,443,105	-				-1.2
4,443,200	+				-0.7
4,443,200	+				+1.4
4,443,200	+				+1.4
4,443,200	+				+0.5
4,443,200	+				-0.6
4,443,200	+				-0.7
4,443,200	+				-0.1
4,443,201	-				-1.3
4,443,201	-				+0.8
4,443,201	-				-0.9
4,443,236	+				-0.7
4,443,349	+				+0.8
4,443,349	+				+1.1
4,443,350	-				-0.7
4,443,350	-				-0.9
4,443,409	+				-0.5
4,443,409	+				+1.5
4,443,409	+				-1.5
4,443,410	-				+0.2
4,443,419	+				+1.1
4,443,426	+				+0.1
4,443,426	+				+0.6
4,443,426	+				+1.1
4,443,426	+				+0.5
4,443,427	-				-0.2
4,443,427	-				-1.0
4,443,439	+				-0.2
4,443,439	+				+0.5
4,443,440	-				+0.4
4,443,440	-				+0.4
4,443,492	+				-0.6
4,443,820	-		Psyr_3734	0.13	+1.7
4,443,820	-		Psyr_3734	0.13	+1.1
4,443,820	-		Psyr_3734	0.13	-0.3
4,444,030	-		Psyr_3734	0.20	-2.1
4,444,044	+		Psyr_3734	0.21	-0.9
4,444,044	+		Psyr_3734	0.21	+0.2
4,444,045	-		Psyr_3734	0.21	+2.1
4,444,186	-		Psyr_3734	0.25	-0.2