Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3709

Experiment: KB with Nalidixic 12.5 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_3708 and Psyr_3709 overlap by 4 nucleotidesPsyr_3709 and Psyr_3710 are separated by 27 nucleotidesPsyr_3710 and Psyr_3711 are separated by 172 nucleotides Psyr_3708: Psyr_3708 - ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal, at 4,395,052 to 4,396,398 _3708 Psyr_3709: Psyr_3709 - Response regulator receiver:Transcriptional regulatory protein, C-terminal, at 4,396,395 to 4,397,072 _3709 Psyr_3710: Psyr_3710 - conserved hypothetical protein, at 4,397,100 to 4,397,450 _3710 Psyr_3711: Psyr_3711 - Dienelactone hydrolase, at 4,397,623 to 4,398,411 _3711 Position (kb) 4396 4397 4398Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4395.620 kb on - strand, within Psyr_3708at 4395.899 kb on + strand, within Psyr_3708at 4395.899 kb on + strand, within Psyr_3708at 4395.899 kb on + strand, within Psyr_3708at 4395.900 kb on - strand, within Psyr_3708at 4395.936 kb on - strand, within Psyr_3708at 4395.963 kb on + strand, within Psyr_3708at 4396.019 kb on + strand, within Psyr_3708at 4396.020 kb on - strand, within Psyr_3708at 4396.020 kb on - strand, within Psyr_3708at 4396.073 kb on + strand, within Psyr_3708at 4396.145 kb on + strand, within Psyr_3708at 4396.145 kb on + strand, within Psyr_3708at 4396.145 kb on + strand, within Psyr_3708at 4396.145 kb on + strand, within Psyr_3708at 4396.145 kb on + strand, within Psyr_3708at 4396.145 kb on + strand, within Psyr_3708at 4396.145 kb on + strand, within Psyr_3708at 4396.145 kb on + strand, within Psyr_3708at 4396.145 kb on + strand, within Psyr_3708at 4396.146 kb on - strand, within Psyr_3708at 4396.146 kb on - strand, within Psyr_3708at 4396.146 kb on - strand, within Psyr_3708at 4396.146 kb on - strand, within Psyr_3708at 4396.146 kb on - strand, within Psyr_3708at 4396.146 kb on - strand, within Psyr_3708at 4396.146 kb on - strand, within Psyr_3708at 4396.146 kb on - strand, within Psyr_3708at 4396.146 kb on - strand, within Psyr_3708at 4396.146 kb on - strand, within Psyr_3708at 4396.146 kb on - strand, within Psyr_3708at 4396.146 kb on - strand, within Psyr_3708at 4396.151 kb on + strand, within Psyr_3708at 4396.151 kb on + strand, within Psyr_3708at 4396.152 kb on - strand, within Psyr_3708at 4396.152 kb on - strand, within Psyr_3708at 4396.198 kb on + strand, within Psyr_3708at 4396.400 kb on + strandat 4396.401 kb on - strandat 4396.401 kb on - strandat 4396.421 kb on - strandat 4396.421 kb on - strandat 4396.616 kb on - strand, within Psyr_3709at 4396.777 kb on - strand, within Psyr_3709at 4396.777 kb on - strand, within Psyr_3709at 4396.777 kb on - strand, within Psyr_3709at 4396.780 kb on + strand, within Psyr_3709at 4396.781 kb on - strand, within Psyr_3709at 4396.781 kb on - strand, within Psyr_3709at 4396.781 kb on - strand, within Psyr_3709at 4396.961 kb on - strand, within Psyr_3709at 4396.961 kb on - strand, within Psyr_3709at 4396.961 kb on - strand, within Psyr_3709at 4397.135 kb on + strand, within Psyr_3710at 4397.135 kb on + strand, within Psyr_3710at 4397.135 kb on + strand, within Psyr_3710at 4397.179 kb on + strand, within Psyr_3710at 4397.179 kb on + strand, within Psyr_3710at 4397.179 kb on + strand, within Psyr_3710at 4397.179 kb on + strandat 4397.179 kb on + strand, within Psyr_3710at 4397.179 kb on + strand, within Psyr_3710at 4397.180 kb on - strand, within Psyr_3710at 4397.180 kb on - strand, within Psyr_3710at 4397.180 kb on - strand, within Psyr_3710at 4397.180 kb on - strand, within Psyr_3710at 4397.180 kb on - strand, within Psyr_3710at 4397.180 kb on - strand, within Psyr_3710at 4397.258 kb on - strand, within Psyr_3710at 4397.450 kb on + strandat 4397.450 kb on + strandat 4397.450 kb on + strandat 4397.588 kb on + strandat 4397.588 kb on + strandat 4397.588 kb on + strandat 4397.734 kb on + strand, within Psyr_3711at 4397.735 kb on - strand, within Psyr_3711at 4397.737 kb on + strand, within Psyr_3711at 4397.738 kb on - strand, within Psyr_3711at 4397.738 kb on - strand, within Psyr_3711at 4397.738 kb on - strand, within Psyr_3711at 4397.738 kb on - strand, within Psyr_3711at 4397.875 kb on + strandat 4397.875 kb on + strand, within Psyr_3711at 4397.875 kb on + strand, within Psyr_3711at 4397.875 kb on + strand, within Psyr_3711at 4397.875 kb on + strand, within Psyr_3711at 4397.875 kb on + strand, within Psyr_3711at 4397.876 kb on - strand, within Psyr_3711at 4397.876 kb on - strand, within Psyr_3711at 4397.876 kb on - strand, within Psyr_3711at 4397.876 kb on - strand, within Psyr_3711at 4397.876 kb on - strand, within Psyr_3711

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nalidixic 12.5 ug/ml
remove
4,395,620 - Psyr_3708 0.42 +0.3
4,395,899 + Psyr_3708 0.63 -1.2
4,395,899 + Psyr_3708 0.63 -1.7
4,395,899 + Psyr_3708 0.63 +0.2
4,395,900 - Psyr_3708 0.63 +0.7
4,395,936 - Psyr_3708 0.66 +1.1
4,395,963 + Psyr_3708 0.68 -0.9
4,396,019 + Psyr_3708 0.72 +0.1
4,396,020 - Psyr_3708 0.72 +1.1
4,396,020 - Psyr_3708 0.72 +2.9
4,396,073 + Psyr_3708 0.76 +0.5
4,396,145 + Psyr_3708 0.81 +1.9
4,396,145 + Psyr_3708 0.81 +0.9
4,396,145 + Psyr_3708 0.81 -1.2
4,396,145 + Psyr_3708 0.81 +0.7
4,396,145 + Psyr_3708 0.81 +0.2
4,396,145 + Psyr_3708 0.81 -0.3
4,396,145 + Psyr_3708 0.81 +0.7
4,396,145 + Psyr_3708 0.81 -0.7
4,396,145 + Psyr_3708 0.81 +2.1
4,396,146 - Psyr_3708 0.81 -0.6
4,396,146 - Psyr_3708 0.81 +1.1
4,396,146 - Psyr_3708 0.81 +2.9
4,396,146 - Psyr_3708 0.81 +1.0
4,396,146 - Psyr_3708 0.81 -1.9
4,396,146 - Psyr_3708 0.81 +0.4
4,396,146 - Psyr_3708 0.81 -0.0
4,396,146 - Psyr_3708 0.81 +0.3
4,396,146 - Psyr_3708 0.81 -0.1
4,396,146 - Psyr_3708 0.81 -0.7
4,396,146 - Psyr_3708 0.81 -0.7
4,396,146 - Psyr_3708 0.81 -0.2
4,396,151 + Psyr_3708 0.82 +0.4
4,396,151 + Psyr_3708 0.82 -1.7
4,396,152 - Psyr_3708 0.82 -0.3
4,396,152 - Psyr_3708 0.82 +0.5
4,396,198 + Psyr_3708 0.85 +1.7
4,396,400 + +1.1
4,396,401 - +0.5
4,396,401 - +1.7
4,396,421 - +0.1
4,396,421 - -0.2
4,396,616 - Psyr_3709 0.33 -0.1
4,396,777 - Psyr_3709 0.56 +0.9
4,396,777 - Psyr_3709 0.56 +0.5
4,396,777 - Psyr_3709 0.56 +1.3
4,396,780 + Psyr_3709 0.57 +0.6
4,396,781 - Psyr_3709 0.57 -1.1
4,396,781 - Psyr_3709 0.57 -0.4
4,396,781 - Psyr_3709 0.57 +0.4
4,396,961 - Psyr_3709 0.83 +0.8
4,396,961 - Psyr_3709 0.83 +3.0
4,396,961 - Psyr_3709 0.83 +2.1
4,397,135 + Psyr_3710 0.10 -0.6
4,397,135 + Psyr_3710 0.10 -0.2
4,397,135 + Psyr_3710 0.10 -0.6
4,397,179 + Psyr_3710 0.23 -0.1
4,397,179 + Psyr_3710 0.23 +0.0
4,397,179 + Psyr_3710 0.23 +0.1
4,397,179 + -0.5
4,397,179 + Psyr_3710 0.23 -1.8
4,397,179 + Psyr_3710 0.23 +0.7
4,397,180 - Psyr_3710 0.23 +0.3
4,397,180 - Psyr_3710 0.23 +0.1
4,397,180 - Psyr_3710 0.23 +1.4
4,397,180 - Psyr_3710 0.23 +1.1
4,397,180 - Psyr_3710 0.23 +0.1
4,397,180 - Psyr_3710 0.23 +1.0
4,397,258 - Psyr_3710 0.45 +0.4
4,397,450 + -1.4
4,397,450 + -0.1
4,397,450 + -0.4
4,397,588 + -0.5
4,397,588 + +0.1
4,397,588 + -0.8
4,397,734 + Psyr_3711 0.14 +1.1
4,397,735 - Psyr_3711 0.14 -1.2
4,397,737 + Psyr_3711 0.14 +0.2
4,397,738 - Psyr_3711 0.15 +0.8
4,397,738 - Psyr_3711 0.15 +1.1
4,397,738 - Psyr_3711 0.15 -1.0
4,397,738 - Psyr_3711 0.15 +0.4
4,397,875 + -0.2
4,397,875 + Psyr_3711 0.32 -0.1
4,397,875 + Psyr_3711 0.32 +0.6
4,397,875 + Psyr_3711 0.32 -1.1
4,397,875 + Psyr_3711 0.32 -0.5
4,397,875 + Psyr_3711 0.32 -0.9
4,397,876 - Psyr_3711 0.32 +0.7
4,397,876 - Psyr_3711 0.32 +0.5
4,397,876 - Psyr_3711 0.32 -0.1
4,397,876 - Psyr_3711 0.32 -0.5
4,397,876 - Psyr_3711 0.32 +0.1

Or see this region's nucleotide sequence