Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3501

Experiment: KB with Nalidixic 12.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Nalidixic 12.5 ug/ml
4,171,052	+		Psyr_3500	0.39	+1.2
4,171,052	+		Psyr_3500	0.39	+0.7
4,171,052	+		Psyr_3500	0.39	-0.4
4,171,052	+		Psyr_3500	0.39	+2.2
4,171,052	+		Psyr_3500	0.39	-0.8
4,171,052	+		Psyr_3500	0.39	-0.8
4,171,052	+		Psyr_3500	0.39	+0.2
4,171,052	+		Psyr_3500	0.39	-1.0
4,171,053	-		Psyr_3500	0.39	+0.7
4,171,156	-		Psyr_3500	0.48	-0.0
4,171,193	+		Psyr_3500	0.51	+0.2
4,171,256	+		Psyr_3500	0.56	+1.2
4,171,256	+		Psyr_3500	0.56	-0.4
4,171,257	-		Psyr_3500	0.56	-2.1
4,171,257	-		Psyr_3500	0.56	+1.3
4,171,257	-		Psyr_3500	0.56	-0.6
4,171,257	-		Psyr_3500	0.56	-0.8
4,171,257	-		Psyr_3500	0.56	-0.2
4,171,425	-		Psyr_3500	0.70	-1.5
4,171,542	-		Psyr_3500	0.80	-1.1
4,171,574	+		Psyr_3500	0.83	+0.5
4,171,574	+		Psyr_3500	0.83	+0.1
4,171,575	-		Psyr_3500	0.83	-0.2
4,171,645	+		Psyr_3500	0.89	+0.7
4,171,645	+		Psyr_3500	0.89	+0.2
4,171,700	+				-1.0
4,171,701	-				+0.2
4,171,703	+				+0.0
4,171,703	+				+2.0
4,171,703	+				-0.4
4,171,703	+				+1.8
4,171,703	+				-0.1
4,171,704	-				-0.4
4,171,704	-				+0.0
4,171,704	-				-1.1
4,171,704	-				+1.2
4,171,745	+				-1.2
4,171,745	+				+0.9
4,171,745	+				+1.2
4,171,745	+				-0.8
4,171,746	-				-0.7
4,171,746	-				-0.1
4,171,746	-				+0.9
4,171,746	-				+2.2
4,171,746	-				-1.3
4,171,746	-				+0.2
4,171,746	-				-0.5
4,171,746	-				-0.0
4,171,823	+				-1.1
4,171,914	+				-1.1
4,171,914	+				+0.6
4,171,914	+				+0.0
4,171,914	+				+1.2
4,171,914	+				-2.4
4,171,915	-				+0.6
4,171,915	-				+0.2
4,171,915	-				+0.5
4,171,915	-				+1.2
4,171,915	-				+1.7
4,171,915	-				+0.7
4,171,915	-				+1.2
4,171,915	-				+1.0
4,171,915	-				+0.5
4,171,915	-				-2.0
4,171,935	+				-0.6
4,171,935	+				-0.8
4,171,936	-				+0.5
4,171,936	-				-0.0
4,171,936	-				-0.4
4,171,940	-				+0.7
4,171,940	-				+0.4
4,171,940	-				+3.8
4,171,940	-				+0.4
4,171,940	-				+0.4
4,171,947	+				+2.5
4,171,949	+				+0.8
4,171,950	-				+1.0
4,171,951	+				-2.0
4,171,951	+				-0.8
4,171,951	+				+1.3
4,171,952	-				+0.3
4,171,952	-				+0.2
4,171,952	-				+3.3
4,172,033	+				-0.4
4,172,065	+				-1.8
4,172,066	-				+1.5
4,172,078	+				-1.6
4,172,079	-				-0.4
4,172,090	+				-0.8
4,172,090	+				+1.4
4,172,091	-				+0.7
4,172,163	-		Psyr_3501	0.14	-0.1
4,172,195	+		Psyr_3501	0.16	+1.2
4,172,272	+		Psyr_3501	0.22	+0.8
4,172,272	+		Psyr_3501	0.22	+0.6
4,172,273	-		Psyr_3501	0.22	-0.1
4,172,327	+		Psyr_3501	0.26	-0.8
4,172,327	+		Psyr_3501	0.26	-0.5
4,172,327	+		Psyr_3501	0.26	-0.2
4,172,327	+		Psyr_3501	0.26	-0.4
4,172,328	-		Psyr_3501	0.26	-0.1
4,172,328	-		Psyr_3501	0.26	+0.3
4,172,328	-		Psyr_3501	0.26	-0.3
4,172,388	-		Psyr_3501	0.31	+0.6
4,172,388	-		Psyr_3501	0.31	+0.4
4,172,740	-		Psyr_3501	0.57	+0.5
4,172,755	+		Psyr_3501	0.58	-0.1
4,172,755	+		Psyr_3501	0.58	-0.1
4,172,759	+		Psyr_3501	0.59	-0.0
4,172,759	+		Psyr_3501	0.59	-0.4
4,172,759	+		Psyr_3501	0.59	-1.8
4,172,759	+		Psyr_3501	0.59	+1.2
4,172,759	+		Psyr_3501	0.59	+0.3
4,172,760	-		Psyr_3501	0.59	+0.2
4,172,760	-		Psyr_3501	0.59	+0.7
4,172,760	-		Psyr_3501	0.59	+0.1
4,172,760	-		Psyr_3501	0.59	+0.0
4,172,760	-		Psyr_3501	0.59	-0.7
4,172,760	-		Psyr_3501	0.59	+1.6
4,173,031	+		Psyr_3501	0.79	+0.5
4,173,168	-		Psyr_3501	0.89	-2.5
4,173,218	+				-1.2
4,173,219	-				-0.2
4,173,389	+				-1.7
4,173,412	+				-2.2
4,173,433	+				-1.1
4,173,434	-				-1.5
4,173,434	-				+0.2
4,173,434	-				-2.2
4,173,468	+				-0.3
4,173,469	-				+0.8
4,173,837	+				-1.6
4,173,837	+				+0.2
4,173,837	+				+0.4
4,173,837	+				+0.7
4,173,837	+				+0.6
4,173,837	+				-0.6
4,173,855	+				+0.8
4,173,871	-				-1.1
4,173,871	-				+2.8
4,173,871	-				-0.1
4,173,871	-				+0.2
4,173,871	-				-1.0
4,173,871	-				-2.8
4,173,871	-				-0.1
4,173,871	-				+0.3
4,173,871	-				-0.0
4,173,871	-				+0.3
4,173,871	-				+0.4
4,173,871	-				+0.1
4,173,871	-				+1.3
4,173,871	-				+0.3
4,173,871	-				-0.1
4,173,876	+				+0.2
4,173,906	+				-2.3
4,173,906	+				-0.5
4,173,906	+				+0.6
4,173,906	+				+0.5
4,173,906	+				+0.4
4,173,906	+				-0.9
4,173,907	-				+0.6
4,174,141	-		Psyr_3502	0.15	+1.0
4,174,184	+		Psyr_3502	0.17	+0.7
4,174,184	+		Psyr_3502	0.17	-0.4
4,174,218	+		Psyr_3502	0.18	-0.6
4,174,218	+		Psyr_3502	0.18	+0.6
4,174,218	+		Psyr_3502	0.18	+0.9
4,174,218	+		Psyr_3502	0.18	-2.1
4,174,219	-		Psyr_3502	0.18	+0.4
4,174,219	-		Psyr_3502	0.18	-1.4
4,174,219	-		Psyr_3502	0.18	-0.3
4,174,219	-		Psyr_3502	0.18	-0.3
4,174,219	-		Psyr_3502	0.18	-0.9
4,174,219	-		Psyr_3502	0.18	+0.2
4,174,219	-		Psyr_3502	0.18	+0.7
4,174,219	-		Psyr_3502	0.18	-0.6