Experiment: KB with Nalidixic 12.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3407 and Psyr_3408 are separated by 63 nucleotides Psyr_3408 and Psyr_3409 are separated by 417 nucleotides
Psyr_3407: Psyr_3407 - conserved hypothetical protein, at 4,068,363 to 4,068,908
_3407
Psyr_3408: Psyr_3408 - Outer membrane autotransporter barrel, at 4,068,972 to 4,071,101
_3408
Psyr_3409: Psyr_3409 - conserved hypothetical protein, at 4,071,519 to 4,073,348
_3409
Position (kb) 4068
4069
4070
4071
4072 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4068.023 kb on - strand at 4068.028 kb on + strand at 4068.042 kb on + strand at 4068.108 kb on - strand at 4068.237 kb on - strand at 4068.301 kb on + strand at 4068.301 kb on + strand at 4068.301 kb on + strand at 4068.301 kb on + strand at 4068.302 kb on - strand at 4068.302 kb on - strand at 4068.302 kb on - strand at 4068.302 kb on - strand at 4068.312 kb on + strand at 4068.361 kb on + strand at 4068.370 kb on + strand at 4068.410 kb on - strand at 4068.524 kb on + strand, within Psyr_3407 at 4068.605 kb on + strand, within Psyr_3407 at 4068.606 kb on - strand, within Psyr_3407 at 4068.614 kb on + strand, within Psyr_3407 at 4068.615 kb on - strand, within Psyr_3407 at 4068.721 kb on + strand, within Psyr_3407 at 4068.721 kb on + strand, within Psyr_3407 at 4068.721 kb on + strand, within Psyr_3407 at 4068.722 kb on - strand, within Psyr_3407 at 4068.722 kb on - strand, within Psyr_3407 at 4068.722 kb on - strand, within Psyr_3407 at 4068.722 kb on - strand, within Psyr_3407 at 4068.734 kb on + strand, within Psyr_3407 at 4068.734 kb on + strand, within Psyr_3407 at 4068.741 kb on + strand, within Psyr_3407 at 4068.756 kb on + strand, within Psyr_3407 at 4068.783 kb on + strand, within Psyr_3407 at 4068.838 kb on + strand, within Psyr_3407 at 4068.906 kb on + strand at 4068.906 kb on + strand at 4069.036 kb on + strand at 4069.036 kb on + strand at 4069.037 kb on - strand at 4069.037 kb on - strand at 4069.037 kb on - strand at 4069.037 kb on - strand at 4069.037 kb on - strand at 4069.191 kb on + strand, within Psyr_3408 at 4069.191 kb on + strand, within Psyr_3408 at 4069.191 kb on + strand, within Psyr_3408 at 4069.191 kb on + strand, within Psyr_3408 at 4069.191 kb on + strand, within Psyr_3408 at 4069.191 kb on + strand, within Psyr_3408 at 4069.191 kb on + strand, within Psyr_3408 at 4069.191 kb on + strand, within Psyr_3408 at 4069.192 kb on - strand, within Psyr_3408 at 4069.192 kb on - strand, within Psyr_3408 at 4069.192 kb on - strand, within Psyr_3408 at 4069.192 kb on - strand, within Psyr_3408 at 4069.192 kb on - strand, within Psyr_3408 at 4069.192 kb on - strand, within Psyr_3408 at 4069.192 kb on - strand, within Psyr_3408 at 4069.192 kb on - strand, within Psyr_3408 at 4069.192 kb on - strand, within Psyr_3408 at 4069.195 kb on + strand, within Psyr_3408 at 4069.195 kb on + strand, within Psyr_3408 at 4069.195 kb on + strand, within Psyr_3408 at 4069.196 kb on - strand, within Psyr_3408 at 4069.196 kb on - strand, within Psyr_3408 at 4069.196 kb on - strand, within Psyr_3408 at 4069.196 kb on - strand, within Psyr_3408 at 4069.196 kb on - strand, within Psyr_3408 at 4069.196 kb on - strand, within Psyr_3408 at 4069.366 kb on + strand, within Psyr_3408 at 4069.413 kb on + strand, within Psyr_3408 at 4069.429 kb on + strand, within Psyr_3408 at 4069.430 kb on - strand, within Psyr_3408 at 4069.430 kb on - strand, within Psyr_3408 at 4069.513 kb on + strand, within Psyr_3408 at 4069.513 kb on + strand, within Psyr_3408 at 4069.513 kb on + strand, within Psyr_3408 at 4069.513 kb on + strand, within Psyr_3408 at 4069.513 kb on + strand, within Psyr_3408 at 4069.513 kb on + strand, within Psyr_3408 at 4069.513 kb on + strand, within Psyr_3408 at 4069.514 kb on - strand, within Psyr_3408 at 4069.514 kb on - strand, within Psyr_3408 at 4069.514 kb on - strand, within Psyr_3408 at 4069.514 kb on - strand, within Psyr_3408 at 4069.514 kb on - strand, within Psyr_3408 at 4069.516 kb on + strand, within Psyr_3408 at 4069.543 kb on + strand, within Psyr_3408 at 4069.555 kb on + strand, within Psyr_3408 at 4069.555 kb on + strand, within Psyr_3408 at 4069.555 kb on + strand, within Psyr_3408 at 4069.555 kb on + strand, within Psyr_3408 at 4069.555 kb on + strand, within Psyr_3408 at 4069.556 kb on - strand, within Psyr_3408 at 4069.558 kb on + strand, within Psyr_3408 at 4069.558 kb on + strand, within Psyr_3408 at 4069.558 kb on + strand, within Psyr_3408 at 4069.558 kb on + strand, within Psyr_3408 at 4069.558 kb on + strand, within Psyr_3408 at 4069.558 kb on + strand, within Psyr_3408 at 4069.558 kb on + strand, within Psyr_3408 at 4069.558 kb on + strand, within Psyr_3408 at 4069.558 kb on + strand, within Psyr_3408 at 4069.558 kb on + strand, within Psyr_3408 at 4069.558 kb on + strand, within Psyr_3408 at 4069.559 kb on - strand, within Psyr_3408 at 4069.559 kb on - strand, within Psyr_3408 at 4069.559 kb on - strand, within Psyr_3408 at 4069.559 kb on - strand, within Psyr_3408 at 4069.559 kb on - strand, within Psyr_3408 at 4069.559 kb on - strand, within Psyr_3408 at 4069.559 kb on - strand, within Psyr_3408 at 4069.559 kb on - strand, within Psyr_3408 at 4069.559 kb on - strand, within Psyr_3408 at 4069.559 kb on - strand, within Psyr_3408 at 4069.559 kb on - strand, within Psyr_3408 at 4069.559 kb on - strand, within Psyr_3408 at 4069.571 kb on + strand, within Psyr_3408 at 4069.808 kb on + strand, within Psyr_3408 at 4069.808 kb on + strand, within Psyr_3408 at 4069.846 kb on + strand, within Psyr_3408 at 4069.846 kb on + strand, within Psyr_3408 at 4069.846 kb on + strand, within Psyr_3408 at 4069.846 kb on + strand, within Psyr_3408 at 4069.846 kb on + strand, within Psyr_3408 at 4069.879 kb on - strand, within Psyr_3408 at 4069.879 kb on - strand, within Psyr_3408 at 4069.933 kb on + strand, within Psyr_3408 at 4069.934 kb on - strand, within Psyr_3408 at 4069.934 kb on - strand, within Psyr_3408 at 4069.934 kb on - strand, within Psyr_3408 at 4069.934 kb on - strand, within Psyr_3408 at 4069.934 kb on - strand, within Psyr_3408 at 4069.998 kb on - strand, within Psyr_3408 at 4070.494 kb on - strand, within Psyr_3408 at 4070.495 kb on + strand, within Psyr_3408 at 4070.495 kb on + strand, within Psyr_3408 at 4070.496 kb on - strand, within Psyr_3408 at 4070.572 kb on + strand, within Psyr_3408 at 4070.572 kb on + strand, within Psyr_3408 at 4070.623 kb on - strand, within Psyr_3408 at 4070.643 kb on + strand, within Psyr_3408 at 4070.643 kb on + strand, within Psyr_3408 at 4070.643 kb on + strand, within Psyr_3408 at 4070.644 kb on - strand, within Psyr_3408 at 4070.644 kb on - strand, within Psyr_3408 at 4070.644 kb on - strand, within Psyr_3408 at 4070.644 kb on - strand, within Psyr_3408 at 4070.644 kb on - strand, within Psyr_3408 at 4070.644 kb on - strand, within Psyr_3408 at 4070.644 kb on - strand, within Psyr_3408 at 4070.644 kb on - strand, within Psyr_3408 at 4070.647 kb on + strand, within Psyr_3408 at 4070.647 kb on + strand, within Psyr_3408 at 4070.647 kb on + strand, within Psyr_3408 at 4070.648 kb on - strand, within Psyr_3408 at 4070.648 kb on - strand, within Psyr_3408 at 4070.708 kb on + strand, within Psyr_3408 at 4070.741 kb on + strand, within Psyr_3408 at 4070.742 kb on - strand, within Psyr_3408 at 4070.742 kb on - strand, within Psyr_3408 at 4070.883 kb on - strand, within Psyr_3408 at 4070.944 kb on - strand at 4070.973 kb on - strand at 4071.018 kb on + strand at 4071.025 kb on + strand at 4071.025 kb on + strand at 4071.026 kb on - strand at 4071.026 kb on - strand at 4071.026 kb on - strand at 4071.029 kb on + strand at 4071.030 kb on - strand at 4071.030 kb on - strand at 4071.055 kb on + strand at 4071.055 kb on + strand at 4071.055 kb on + strand at 4071.056 kb on - strand at 4071.056 kb on - strand at 4071.056 kb on - strand at 4071.056 kb on - strand at 4071.056 kb on - strand at 4071.056 kb on - strand at 4071.056 kb on - strand at 4071.149 kb on - strand at 4071.359 kb on - strand at 4071.574 kb on + strand at 4071.615 kb on - strand at 4071.616 kb on + strand at 4071.690 kb on + strand at 4071.724 kb on + strand, within Psyr_3409 at 4071.724 kb on + strand, within Psyr_3409 at 4071.764 kb on - strand, within Psyr_3409 at 4071.766 kb on + strand, within Psyr_3409 at 4071.767 kb on - strand, within Psyr_3409 at 4071.825 kb on + strand, within Psyr_3409 at 4071.882 kb on - strand, within Psyr_3409 at 4071.922 kb on - strand, within Psyr_3409 at 4071.922 kb on - strand, within Psyr_3409 at 4071.988 kb on + strand, within Psyr_3409 at 4071.988 kb on + strand, within Psyr_3409 at 4071.989 kb on - strand, within Psyr_3409 at 4071.989 kb on - strand, within Psyr_3409 at 4071.989 kb on - strand, within Psyr_3409 at 4072.048 kb on - strand, within Psyr_3409
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nalidixic 12.5 ug/ml remove 4,068,023 - +1.8 4,068,028 + -0.8 4,068,042 + -1.7 4,068,108 - -2.1 4,068,237 - +1.2 4,068,301 + +2.0 4,068,301 + +0.5 4,068,301 + +0.5 4,068,301 + -1.7 4,068,302 - -0.4 4,068,302 - -1.1 4,068,302 - +1.2 4,068,302 - -2.0 4,068,312 + +1.2 4,068,361 + -0.4 4,068,370 + -1.6 4,068,410 - +0.2 4,068,524 + Psyr_3407 0.29 +1.2 4,068,605 + Psyr_3407 0.44 +0.6 4,068,606 - Psyr_3407 0.45 -0.1 4,068,614 + Psyr_3407 0.46 +2.2 4,068,615 - Psyr_3407 0.46 +1.4 4,068,721 + Psyr_3407 0.66 +0.4 4,068,721 + Psyr_3407 0.66 -1.4 4,068,721 + Psyr_3407 0.66 -0.3 4,068,722 - Psyr_3407 0.66 -3.3 4,068,722 - Psyr_3407 0.66 +0.2 4,068,722 - Psyr_3407 0.66 +0.2 4,068,722 - Psyr_3407 0.66 -1.5 4,068,734 + Psyr_3407 0.68 +3.2 4,068,734 + Psyr_3407 0.68 -0.2 4,068,741 + Psyr_3407 0.69 +0.2 4,068,756 + Psyr_3407 0.72 +0.6 4,068,783 + Psyr_3407 0.77 +0.5 4,068,838 + Psyr_3407 0.87 -0.4 4,068,906 + +0.5 4,068,906 + +0.5 4,069,036 + +0.8 4,069,036 + +0.7 4,069,037 - +0.5 4,069,037 - +0.4 4,069,037 - +1.8 4,069,037 - -0.4 4,069,037 - -0.2 4,069,191 + Psyr_3408 0.10 +3.0 4,069,191 + Psyr_3408 0.10 -1.3 4,069,191 + Psyr_3408 0.10 -2.4 4,069,191 + Psyr_3408 0.10 -0.1 4,069,191 + Psyr_3408 0.10 +0.7 4,069,191 + Psyr_3408 0.10 -1.5 4,069,191 + Psyr_3408 0.10 +1.6 4,069,191 + Psyr_3408 0.10 +0.3 4,069,192 - Psyr_3408 0.10 -0.0 4,069,192 - Psyr_3408 0.10 +0.2 4,069,192 - Psyr_3408 0.10 -0.0 4,069,192 - Psyr_3408 0.10 -0.1 4,069,192 - Psyr_3408 0.10 +0.2 4,069,192 - Psyr_3408 0.10 +0.8 4,069,192 - Psyr_3408 0.10 -3.0 4,069,192 - Psyr_3408 0.10 -0.0 4,069,192 - Psyr_3408 0.10 +0.2 4,069,195 + Psyr_3408 0.10 -0.5 4,069,195 + Psyr_3408 0.10 -0.1 4,069,195 + Psyr_3408 0.10 +0.3 4,069,196 - Psyr_3408 0.11 -1.4 4,069,196 - Psyr_3408 0.11 -0.8 4,069,196 - Psyr_3408 0.11 -0.1 4,069,196 - Psyr_3408 0.11 -0.4 4,069,196 - Psyr_3408 0.11 -0.2 4,069,196 - Psyr_3408 0.11 -0.1 4,069,366 + Psyr_3408 0.18 -1.4 4,069,413 + Psyr_3408 0.21 -0.8 4,069,429 + Psyr_3408 0.21 -0.4 4,069,430 - Psyr_3408 0.22 -0.4 4,069,430 - Psyr_3408 0.22 -0.4 4,069,513 + Psyr_3408 0.25 -0.8 4,069,513 + Psyr_3408 0.25 -2.5 4,069,513 + Psyr_3408 0.25 -1.4 4,069,513 + Psyr_3408 0.25 +0.4 4,069,513 + Psyr_3408 0.25 -0.1 4,069,513 + Psyr_3408 0.25 -1.4 4,069,513 + Psyr_3408 0.25 +0.2 4,069,514 - Psyr_3408 0.25 +0.7 4,069,514 - Psyr_3408 0.25 +0.6 4,069,514 - Psyr_3408 0.25 +1.1 4,069,514 - Psyr_3408 0.25 -0.0 4,069,514 - Psyr_3408 0.25 +1.4 4,069,516 + Psyr_3408 0.26 -0.1 4,069,543 + Psyr_3408 0.27 -0.5 4,069,555 + Psyr_3408 0.27 -2.6 4,069,555 + Psyr_3408 0.27 -1.0 4,069,555 + Psyr_3408 0.27 -0.2 4,069,555 + Psyr_3408 0.27 +0.9 4,069,555 + Psyr_3408 0.27 +1.0 4,069,556 - Psyr_3408 0.27 +0.5 4,069,558 + Psyr_3408 0.28 +0.4 4,069,558 + Psyr_3408 0.28 +0.3 4,069,558 + Psyr_3408 0.28 -1.8 4,069,558 + Psyr_3408 0.28 +1.2 4,069,558 + Psyr_3408 0.28 +1.2 4,069,558 + Psyr_3408 0.28 -0.8 4,069,558 + Psyr_3408 0.28 -0.4 4,069,558 + Psyr_3408 0.28 -0.4 4,069,558 + Psyr_3408 0.28 -0.8 4,069,558 + Psyr_3408 0.28 -0.4 4,069,558 + Psyr_3408 0.28 +0.2 4,069,559 - Psyr_3408 0.28 +2.0 4,069,559 - Psyr_3408 0.28 -1.0 4,069,559 - Psyr_3408 0.28 -1.1 4,069,559 - Psyr_3408 0.28 +1.2 4,069,559 - Psyr_3408 0.28 -0.2 4,069,559 - Psyr_3408 0.28 +0.6 4,069,559 - Psyr_3408 0.28 -0.4 4,069,559 - Psyr_3408 0.28 +0.5 4,069,559 - Psyr_3408 0.28 +1.4 4,069,559 - Psyr_3408 0.28 +0.6 4,069,559 - Psyr_3408 0.28 +0.1 4,069,559 - Psyr_3408 0.28 +1.2 4,069,571 + Psyr_3408 0.28 +0.3 4,069,808 + Psyr_3408 0.39 -1.4 4,069,808 + Psyr_3408 0.39 +1.2 4,069,846 + Psyr_3408 0.41 -0.3 4,069,846 + Psyr_3408 0.41 -1.3 4,069,846 + Psyr_3408 0.41 -1.8 4,069,846 + Psyr_3408 0.41 -1.1 4,069,846 + Psyr_3408 0.41 -0.9 4,069,879 - Psyr_3408 0.43 -0.4 4,069,879 - Psyr_3408 0.43 +1.2 4,069,933 + Psyr_3408 0.45 -0.8 4,069,934 - Psyr_3408 0.45 +1.4 4,069,934 - Psyr_3408 0.45 -0.0 4,069,934 - Psyr_3408 0.45 -0.0 4,069,934 - Psyr_3408 0.45 -0.0 4,069,934 - Psyr_3408 0.45 -0.2 4,069,998 - Psyr_3408 0.48 +0.2 4,070,494 - Psyr_3408 0.71 -0.4 4,070,495 + Psyr_3408 0.72 -2.4 4,070,495 + Psyr_3408 0.72 +2.2 4,070,496 - Psyr_3408 0.72 +0.2 4,070,572 + Psyr_3408 0.75 -0.4 4,070,572 + Psyr_3408 0.75 -0.9 4,070,623 - Psyr_3408 0.78 -1.1 4,070,643 + Psyr_3408 0.78 -0.3 4,070,643 + Psyr_3408 0.78 +0.2 4,070,643 + Psyr_3408 0.78 -2.0 4,070,644 - Psyr_3408 0.78 +0.6 4,070,644 - Psyr_3408 0.78 +1.0 4,070,644 - Psyr_3408 0.78 -0.4 4,070,644 - Psyr_3408 0.78 -1.4 4,070,644 - Psyr_3408 0.78 +0.1 4,070,644 - Psyr_3408 0.78 -2.4 4,070,644 - Psyr_3408 0.78 -0.7 4,070,644 - Psyr_3408 0.78 -1.7 4,070,647 + Psyr_3408 0.79 -0.5 4,070,647 + Psyr_3408 0.79 +1.2 4,070,647 + Psyr_3408 0.79 -0.8 4,070,648 - Psyr_3408 0.79 -1.3 4,070,648 - Psyr_3408 0.79 -1.1 4,070,708 + Psyr_3408 0.82 -1.1 4,070,741 + Psyr_3408 0.83 -0.0 4,070,742 - Psyr_3408 0.83 -1.8 4,070,742 - Psyr_3408 0.83 +0.2 4,070,883 - Psyr_3408 0.90 +1.8 4,070,944 - -0.8 4,070,973 - -0.1 4,071,018 + -2.1 4,071,025 + -1.1 4,071,025 + +1.0 4,071,026 - -0.4 4,071,026 - -2.4 4,071,026 - +0.9 4,071,029 + -0.2 4,071,030 - -0.8 4,071,030 - +1.2 4,071,055 + -1.1 4,071,055 + -1.2 4,071,055 + -0.1 4,071,056 - +0.1 4,071,056 - -0.6 4,071,056 - -0.0 4,071,056 - +0.6 4,071,056 - -1.8 4,071,056 - -0.9 4,071,056 - -0.3 4,071,149 - -2.7 4,071,359 - -1.4 4,071,574 + -1.4 4,071,615 - -1.7 4,071,616 + -0.9 4,071,690 + -0.0 4,071,724 + Psyr_3409 0.11 -1.3 4,071,724 + Psyr_3409 0.11 -1.1 4,071,764 - Psyr_3409 0.13 -0.4 4,071,766 + Psyr_3409 0.13 -0.9 4,071,767 - Psyr_3409 0.14 -1.9 4,071,825 + Psyr_3409 0.17 -0.2 4,071,882 - Psyr_3409 0.20 +0.5 4,071,922 - Psyr_3409 0.22 -2.8 4,071,922 - Psyr_3409 0.22 -0.1 4,071,988 + Psyr_3409 0.26 +1.2 4,071,988 + Psyr_3409 0.26 -0.8 4,071,989 - Psyr_3409 0.26 -1.6 4,071,989 - Psyr_3409 0.26 -2.4 4,071,989 - Psyr_3409 0.26 -1.4 4,072,048 - Psyr_3409 0.29 -1.6
Or see this region's nucleotide sequence