Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3407

Experiment: KB with Nalidixic 12.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3406 and Psyr_3407 are separated by 728 nucleotidesPsyr_3407 and Psyr_3408 are separated by 63 nucleotides Psyr_3406: Psyr_3406 - PAS, at 4,066,069 to 4,067,634 _3406 Psyr_3407: Psyr_3407 - conserved hypothetical protein, at 4,068,363 to 4,068,908 _3407 Psyr_3408: Psyr_3408 - Outer membrane autotransporter barrel, at 4,068,972 to 4,071,101 _3408 Position (kb) 4068 4069Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4067.606 kb on - strandat 4067.626 kb on - strandat 4067.741 kb on + strandat 4067.770 kb on - strandat 4067.803 kb on + strandat 4067.911 kb on + strandat 4068.023 kb on - strandat 4068.028 kb on + strandat 4068.042 kb on + strandat 4068.108 kb on - strandat 4068.237 kb on - strandat 4068.301 kb on + strandat 4068.301 kb on + strandat 4068.301 kb on + strandat 4068.301 kb on + strandat 4068.302 kb on - strandat 4068.302 kb on - strandat 4068.302 kb on - strandat 4068.302 kb on - strandat 4068.312 kb on + strandat 4068.361 kb on + strandat 4068.370 kb on + strandat 4068.410 kb on - strandat 4068.524 kb on + strand, within Psyr_3407at 4068.605 kb on + strand, within Psyr_3407at 4068.606 kb on - strand, within Psyr_3407at 4068.614 kb on + strand, within Psyr_3407at 4068.615 kb on - strand, within Psyr_3407at 4068.721 kb on + strand, within Psyr_3407at 4068.721 kb on + strand, within Psyr_3407at 4068.721 kb on + strand, within Psyr_3407at 4068.722 kb on - strand, within Psyr_3407at 4068.722 kb on - strand, within Psyr_3407at 4068.722 kb on - strand, within Psyr_3407at 4068.722 kb on - strand, within Psyr_3407at 4068.734 kb on + strand, within Psyr_3407at 4068.734 kb on + strand, within Psyr_3407at 4068.741 kb on + strand, within Psyr_3407at 4068.756 kb on + strand, within Psyr_3407at 4068.783 kb on + strand, within Psyr_3407at 4068.838 kb on + strand, within Psyr_3407at 4068.906 kb on + strandat 4068.906 kb on + strandat 4069.036 kb on + strandat 4069.036 kb on + strandat 4069.037 kb on - strandat 4069.037 kb on - strandat 4069.037 kb on - strandat 4069.037 kb on - strandat 4069.037 kb on - strandat 4069.191 kb on + strand, within Psyr_3408at 4069.191 kb on + strand, within Psyr_3408at 4069.191 kb on + strand, within Psyr_3408at 4069.191 kb on + strand, within Psyr_3408at 4069.191 kb on + strand, within Psyr_3408at 4069.191 kb on + strand, within Psyr_3408at 4069.191 kb on + strand, within Psyr_3408at 4069.191 kb on + strand, within Psyr_3408at 4069.192 kb on - strand, within Psyr_3408at 4069.192 kb on - strand, within Psyr_3408at 4069.192 kb on - strand, within Psyr_3408at 4069.192 kb on - strand, within Psyr_3408at 4069.192 kb on - strand, within Psyr_3408at 4069.192 kb on - strand, within Psyr_3408at 4069.192 kb on - strand, within Psyr_3408at 4069.192 kb on - strand, within Psyr_3408at 4069.192 kb on - strand, within Psyr_3408at 4069.195 kb on + strand, within Psyr_3408at 4069.195 kb on + strand, within Psyr_3408at 4069.195 kb on + strand, within Psyr_3408at 4069.196 kb on - strand, within Psyr_3408at 4069.196 kb on - strand, within Psyr_3408at 4069.196 kb on - strand, within Psyr_3408at 4069.196 kb on - strand, within Psyr_3408at 4069.196 kb on - strand, within Psyr_3408at 4069.196 kb on - strand, within Psyr_3408at 4069.366 kb on + strand, within Psyr_3408at 4069.413 kb on + strand, within Psyr_3408at 4069.429 kb on + strand, within Psyr_3408at 4069.430 kb on - strand, within Psyr_3408at 4069.430 kb on - strand, within Psyr_3408at 4069.513 kb on + strand, within Psyr_3408at 4069.513 kb on + strand, within Psyr_3408at 4069.513 kb on + strand, within Psyr_3408at 4069.513 kb on + strand, within Psyr_3408at 4069.513 kb on + strand, within Psyr_3408at 4069.513 kb on + strand, within Psyr_3408at 4069.513 kb on + strand, within Psyr_3408at 4069.514 kb on - strand, within Psyr_3408at 4069.514 kb on - strand, within Psyr_3408at 4069.514 kb on - strand, within Psyr_3408at 4069.514 kb on - strand, within Psyr_3408at 4069.514 kb on - strand, within Psyr_3408at 4069.516 kb on + strand, within Psyr_3408at 4069.543 kb on + strand, within Psyr_3408at 4069.555 kb on + strand, within Psyr_3408at 4069.555 kb on + strand, within Psyr_3408at 4069.555 kb on + strand, within Psyr_3408at 4069.555 kb on + strand, within Psyr_3408at 4069.555 kb on + strand, within Psyr_3408at 4069.556 kb on - strand, within Psyr_3408at 4069.558 kb on + strand, within Psyr_3408at 4069.558 kb on + strand, within Psyr_3408at 4069.558 kb on + strand, within Psyr_3408at 4069.558 kb on + strand, within Psyr_3408at 4069.558 kb on + strand, within Psyr_3408at 4069.558 kb on + strand, within Psyr_3408at 4069.558 kb on + strand, within Psyr_3408at 4069.558 kb on + strand, within Psyr_3408at 4069.558 kb on + strand, within Psyr_3408at 4069.558 kb on + strand, within Psyr_3408at 4069.558 kb on + strand, within Psyr_3408at 4069.559 kb on - strand, within Psyr_3408at 4069.559 kb on - strand, within Psyr_3408at 4069.559 kb on - strand, within Psyr_3408at 4069.559 kb on - strand, within Psyr_3408at 4069.559 kb on - strand, within Psyr_3408at 4069.559 kb on - strand, within Psyr_3408at 4069.559 kb on - strand, within Psyr_3408at 4069.559 kb on - strand, within Psyr_3408at 4069.559 kb on - strand, within Psyr_3408at 4069.559 kb on - strand, within Psyr_3408at 4069.559 kb on - strand, within Psyr_3408at 4069.559 kb on - strand, within Psyr_3408at 4069.571 kb on + strand, within Psyr_3408at 4069.808 kb on + strand, within Psyr_3408at 4069.808 kb on + strand, within Psyr_3408at 4069.846 kb on + strand, within Psyr_3408at 4069.846 kb on + strand, within Psyr_3408at 4069.846 kb on + strand, within Psyr_3408at 4069.846 kb on + strand, within Psyr_3408at 4069.846 kb on + strand, within Psyr_3408at 4069.879 kb on - strand, within Psyr_3408at 4069.879 kb on - strand, within Psyr_3408

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nalidixic 12.5 ug/ml
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4,067,606 - +2.0
4,067,626 - -0.9
4,067,741 + -1.9
4,067,770 - -1.0
4,067,803 + -0.8
4,067,911 + +0.6
4,068,023 - +1.8
4,068,028 + -0.8
4,068,042 + -1.7
4,068,108 - -2.1
4,068,237 - +1.2
4,068,301 + +2.0
4,068,301 + +0.5
4,068,301 + +0.5
4,068,301 + -1.7
4,068,302 - -0.4
4,068,302 - -1.1
4,068,302 - +1.2
4,068,302 - -2.0
4,068,312 + +1.2
4,068,361 + -0.4
4,068,370 + -1.6
4,068,410 - +0.2
4,068,524 + Psyr_3407 0.29 +1.2
4,068,605 + Psyr_3407 0.44 +0.6
4,068,606 - Psyr_3407 0.45 -0.1
4,068,614 + Psyr_3407 0.46 +2.2
4,068,615 - Psyr_3407 0.46 +1.4
4,068,721 + Psyr_3407 0.66 +0.4
4,068,721 + Psyr_3407 0.66 -1.4
4,068,721 + Psyr_3407 0.66 -0.3
4,068,722 - Psyr_3407 0.66 -3.3
4,068,722 - Psyr_3407 0.66 +0.2
4,068,722 - Psyr_3407 0.66 +0.2
4,068,722 - Psyr_3407 0.66 -1.5
4,068,734 + Psyr_3407 0.68 +3.2
4,068,734 + Psyr_3407 0.68 -0.2
4,068,741 + Psyr_3407 0.69 +0.2
4,068,756 + Psyr_3407 0.72 +0.6
4,068,783 + Psyr_3407 0.77 +0.5
4,068,838 + Psyr_3407 0.87 -0.4
4,068,906 + +0.5
4,068,906 + +0.5
4,069,036 + +0.8
4,069,036 + +0.7
4,069,037 - +0.5
4,069,037 - +0.4
4,069,037 - +1.8
4,069,037 - -0.4
4,069,037 - -0.2
4,069,191 + Psyr_3408 0.10 +3.0
4,069,191 + Psyr_3408 0.10 -1.3
4,069,191 + Psyr_3408 0.10 -2.4
4,069,191 + Psyr_3408 0.10 -0.1
4,069,191 + Psyr_3408 0.10 +0.7
4,069,191 + Psyr_3408 0.10 -1.5
4,069,191 + Psyr_3408 0.10 +1.6
4,069,191 + Psyr_3408 0.10 +0.3
4,069,192 - Psyr_3408 0.10 -0.0
4,069,192 - Psyr_3408 0.10 +0.2
4,069,192 - Psyr_3408 0.10 -0.0
4,069,192 - Psyr_3408 0.10 -0.1
4,069,192 - Psyr_3408 0.10 +0.2
4,069,192 - Psyr_3408 0.10 +0.8
4,069,192 - Psyr_3408 0.10 -3.0
4,069,192 - Psyr_3408 0.10 -0.0
4,069,192 - Psyr_3408 0.10 +0.2
4,069,195 + Psyr_3408 0.10 -0.5
4,069,195 + Psyr_3408 0.10 -0.1
4,069,195 + Psyr_3408 0.10 +0.3
4,069,196 - Psyr_3408 0.11 -1.4
4,069,196 - Psyr_3408 0.11 -0.8
4,069,196 - Psyr_3408 0.11 -0.1
4,069,196 - Psyr_3408 0.11 -0.4
4,069,196 - Psyr_3408 0.11 -0.2
4,069,196 - Psyr_3408 0.11 -0.1
4,069,366 + Psyr_3408 0.18 -1.4
4,069,413 + Psyr_3408 0.21 -0.8
4,069,429 + Psyr_3408 0.21 -0.4
4,069,430 - Psyr_3408 0.22 -0.4
4,069,430 - Psyr_3408 0.22 -0.4
4,069,513 + Psyr_3408 0.25 -0.8
4,069,513 + Psyr_3408 0.25 -2.5
4,069,513 + Psyr_3408 0.25 -1.4
4,069,513 + Psyr_3408 0.25 +0.4
4,069,513 + Psyr_3408 0.25 -0.1
4,069,513 + Psyr_3408 0.25 -1.4
4,069,513 + Psyr_3408 0.25 +0.2
4,069,514 - Psyr_3408 0.25 +0.7
4,069,514 - Psyr_3408 0.25 +0.6
4,069,514 - Psyr_3408 0.25 +1.1
4,069,514 - Psyr_3408 0.25 -0.0
4,069,514 - Psyr_3408 0.25 +1.4
4,069,516 + Psyr_3408 0.26 -0.1
4,069,543 + Psyr_3408 0.27 -0.5
4,069,555 + Psyr_3408 0.27 -2.6
4,069,555 + Psyr_3408 0.27 -1.0
4,069,555 + Psyr_3408 0.27 -0.2
4,069,555 + Psyr_3408 0.27 +0.9
4,069,555 + Psyr_3408 0.27 +1.0
4,069,556 - Psyr_3408 0.27 +0.5
4,069,558 + Psyr_3408 0.28 +0.4
4,069,558 + Psyr_3408 0.28 +0.3
4,069,558 + Psyr_3408 0.28 -1.8
4,069,558 + Psyr_3408 0.28 +1.2
4,069,558 + Psyr_3408 0.28 +1.2
4,069,558 + Psyr_3408 0.28 -0.8
4,069,558 + Psyr_3408 0.28 -0.4
4,069,558 + Psyr_3408 0.28 -0.4
4,069,558 + Psyr_3408 0.28 -0.8
4,069,558 + Psyr_3408 0.28 -0.4
4,069,558 + Psyr_3408 0.28 +0.2
4,069,559 - Psyr_3408 0.28 +2.0
4,069,559 - Psyr_3408 0.28 -1.0
4,069,559 - Psyr_3408 0.28 -1.1
4,069,559 - Psyr_3408 0.28 +1.2
4,069,559 - Psyr_3408 0.28 -0.2
4,069,559 - Psyr_3408 0.28 +0.6
4,069,559 - Psyr_3408 0.28 -0.4
4,069,559 - Psyr_3408 0.28 +0.5
4,069,559 - Psyr_3408 0.28 +1.4
4,069,559 - Psyr_3408 0.28 +0.6
4,069,559 - Psyr_3408 0.28 +0.1
4,069,559 - Psyr_3408 0.28 +1.2
4,069,571 + Psyr_3408 0.28 +0.3
4,069,808 + Psyr_3408 0.39 -1.4
4,069,808 + Psyr_3408 0.39 +1.2
4,069,846 + Psyr_3408 0.41 -0.3
4,069,846 + Psyr_3408 0.41 -1.3
4,069,846 + Psyr_3408 0.41 -1.8
4,069,846 + Psyr_3408 0.41 -1.1
4,069,846 + Psyr_3408 0.41 -0.9
4,069,879 - Psyr_3408 0.43 -0.4
4,069,879 - Psyr_3408 0.43 +1.2

Or see this region's nucleotide sequence