Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3406

Experiment: KB with Nalidixic 12.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Nalidixic 12.5 ug/ml
4,065,114	+				-0.4
4,065,115	-				-0.1
4,065,116	+				-1.8
4,065,116	+				+0.9
4,065,117	-				+0.6
4,065,175	+				+0.8
4,065,175	+				-1.9
4,065,175	+				+1.9
4,065,175	+				-0.1
4,065,175	+				+0.5
4,065,176	-				+2.5
4,065,176	-				-0.5
4,065,176	-				+1.2
4,065,176	-				-0.2
4,065,176	-				-0.4
4,065,176	-				-0.8
4,065,176	-				-0.8
4,065,176	-				-0.8
4,065,176	-				+0.2
4,065,176	-				-0.8
4,065,321	+		Psyr_3405	0.18	+2.0
4,065,321	+		Psyr_3405	0.18	+0.0
4,065,321	+		Psyr_3405	0.18	+0.9
4,065,322	-		Psyr_3405	0.18	-0.8
4,065,613	+		Psyr_3405	0.54	-0.2
4,065,613	+		Psyr_3405	0.54	+2.0
4,065,614	-		Psyr_3405	0.54	-0.8
4,065,614	-		Psyr_3405	0.54	-0.5
4,065,658	+		Psyr_3405	0.60	-1.4
4,065,718	-		Psyr_3405	0.67	+0.9
4,065,759	+		Psyr_3405	0.73	-0.6
4,065,759	+		Psyr_3405	0.73	-0.6
4,065,759	+		Psyr_3405	0.73	-0.1
4,065,759	+		Psyr_3405	0.73	+1.8
4,066,039	+				+0.2
4,066,039	+				+0.6
4,066,162	+				+1.1
4,066,162	+				-0.0
4,066,162	+				-0.6
4,066,162	+				+2.2
4,066,163	-				-0.4
4,066,163	-				+1.2
4,066,163	-				+0.2
4,066,163	-				+2.2
4,066,163	-				-0.4
4,066,163	-				+1.2
4,066,250	+		Psyr_3406	0.12	+0.4
4,066,250	+		Psyr_3406	0.12	+0.4
4,066,251	-		Psyr_3406	0.12	-0.0
4,066,345	+		Psyr_3406	0.18	-0.4
4,066,346	-		Psyr_3406	0.18	+0.3
4,066,360	+		Psyr_3406	0.19	-3.0
4,066,361	-		Psyr_3406	0.19	-0.8
4,066,456	+		Psyr_3406	0.25	+0.6
4,066,720	+		Psyr_3406	0.42	-0.5
4,066,720	+		Psyr_3406	0.42	+0.2
4,066,720	+		Psyr_3406	0.42	-0.4
4,066,720	+		Psyr_3406	0.42	-0.6
4,066,721	-		Psyr_3406	0.42	-2.4
4,066,721	-		Psyr_3406	0.42	+1.2
4,066,721	-		Psyr_3406	0.42	+0.2
4,066,721	-		Psyr_3406	0.42	+0.2
4,066,721	-		Psyr_3406	0.42	+0.2
4,066,721	-		Psyr_3406	0.42	+0.1
4,066,721	-		Psyr_3406	0.42	+1.0
4,067,246	+		Psyr_3406	0.75	+0.9
4,067,246	+		Psyr_3406	0.75	-0.1
4,067,247	-		Psyr_3406	0.75	-2.7
4,067,247	-		Psyr_3406	0.75	-1.1
4,067,247	-		Psyr_3406	0.75	-1.1
4,067,247	-		Psyr_3406	0.75	-0.7
4,067,606	-				+2.0
4,067,626	-				-0.9
4,067,741	+				-1.9
4,067,770	-				-1.0
4,067,803	+				-0.8
4,067,911	+				+0.6
4,068,023	-				+1.8
4,068,028	+				-0.8
4,068,042	+				-1.7
4,068,108	-				-2.1
4,068,237	-				+1.2
4,068,301	+				+2.0
4,068,301	+				+0.5
4,068,301	+				+0.5
4,068,301	+				-1.7
4,068,302	-				-0.4
4,068,302	-				-1.1
4,068,302	-				+1.2
4,068,302	-				-2.0
4,068,312	+				+1.2
4,068,361	+				-0.4
4,068,370	+				-1.6
4,068,410	-				+0.2
4,068,524	+		Psyr_3407	0.29	+1.2
4,068,605	+		Psyr_3407	0.44	+0.6
4,068,606	-		Psyr_3407	0.45	-0.1
4,068,614	+		Psyr_3407	0.46	+2.2
4,068,615	-		Psyr_3407	0.46	+1.4