Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3380

Experiment: KB with Nalidixic 12.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3378 and Psyr_3379 overlap by 4 nucleotidesPsyr_3379 and Psyr_3380 overlap by 4 nucleotidesPsyr_3380 and Psyr_3381 overlap by 4 nucleotides Psyr_3378: Psyr_3378 - Fusaric acid resistance protein conserved region, at 4,036,675 to 4,038,762 _3378 Psyr_3379: Psyr_3379 - membrane protein, putative, at 4,038,759 to 4,038,968 _3379 Psyr_3380: Psyr_3380 - Secretion protein HlyD, at 4,038,965 to 4,039,849 _3380 Psyr_3381: Psyr_3381 - RND efflux system, outer membrane lipoprotein, NodT, at 4,039,846 to 4,041,279 _3381 Position (kb) 4038 4039 4040Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4037.977 kb on + strand, within Psyr_3378at 4037.978 kb on - strand, within Psyr_3378at 4037.978 kb on - strand, within Psyr_3378at 4038.520 kb on + strand, within Psyr_3378at 4038.738 kb on + strandat 4038.873 kb on + strand, within Psyr_3379at 4038.907 kb on + strand, within Psyr_3379at 4038.907 kb on + strand, within Psyr_3379at 4038.907 kb on + strand, within Psyr_3379at 4038.907 kb on + strand, within Psyr_3379at 4038.907 kb on + strand, within Psyr_3379at 4038.907 kb on + strand, within Psyr_3379at 4038.907 kb on + strand, within Psyr_3379at 4038.908 kb on - strand, within Psyr_3379at 4038.908 kb on - strand, within Psyr_3379at 4038.908 kb on - strand, within Psyr_3379at 4038.913 kb on + strand, within Psyr_3379at 4038.913 kb on + strand, within Psyr_3379at 4038.913 kb on + strand, within Psyr_3379at 4038.913 kb on + strand, within Psyr_3379at 4038.913 kb on + strand, within Psyr_3379at 4038.913 kb on + strand, within Psyr_3379at 4038.914 kb on - strand, within Psyr_3379at 4038.914 kb on - strand, within Psyr_3379at 4038.915 kb on + strand, within Psyr_3379at 4038.915 kb on + strand, within Psyr_3379at 4038.916 kb on - strand, within Psyr_3379at 4038.916 kb on - strand, within Psyr_3379at 4038.916 kb on - strand, within Psyr_3379at 4038.916 kb on - strand, within Psyr_3379at 4038.946 kb on + strand, within Psyr_3379at 4038.946 kb on + strand, within Psyr_3379at 4038.947 kb on - strand, within Psyr_3379at 4038.947 kb on - strand, within Psyr_3379at 4038.947 kb on - strand, within Psyr_3379at 4038.947 kb on - strand, within Psyr_3379at 4039.039 kb on - strandat 4039.039 kb on - strandat 4039.055 kb on + strand, within Psyr_3380at 4039.055 kb on + strand, within Psyr_3380at 4039.055 kb on + strand, within Psyr_3380at 4039.055 kb on + strand, within Psyr_3380at 4039.055 kb on + strand, within Psyr_3380at 4039.055 kb on + strand, within Psyr_3380at 4039.055 kb on + strand, within Psyr_3380at 4039.055 kb on + strand, within Psyr_3380at 4039.056 kb on - strand, within Psyr_3380at 4039.056 kb on - strand, within Psyr_3380at 4039.056 kb on - strand, within Psyr_3380at 4039.056 kb on - strand, within Psyr_3380at 4039.056 kb on - strand, within Psyr_3380at 4039.056 kb on - strand, within Psyr_3380at 4039.056 kb on - strand, within Psyr_3380at 4039.056 kb on - strand, within Psyr_3380at 4039.056 kb on - strand, within Psyr_3380at 4039.056 kb on - strand, within Psyr_3380at 4039.056 kb on - strand, within Psyr_3380at 4039.058 kb on + strand, within Psyr_3380at 4039.058 kb on + strand, within Psyr_3380at 4039.058 kb on + strand, within Psyr_3380at 4039.058 kb on + strand, within Psyr_3380at 4039.058 kb on + strand, within Psyr_3380at 4039.058 kb on + strand, within Psyr_3380at 4039.058 kb on + strand, within Psyr_3380at 4039.058 kb on + strand, within Psyr_3380at 4039.058 kb on + strand, within Psyr_3380at 4039.058 kb on + strand, within Psyr_3380at 4039.058 kb on + strand, within Psyr_3380at 4039.058 kb on + strandat 4039.058 kb on + strand, within Psyr_3380at 4039.059 kb on - strand, within Psyr_3380at 4039.059 kb on - strand, within Psyr_3380at 4039.059 kb on - strand, within Psyr_3380at 4039.059 kb on - strand, within Psyr_3380at 4039.059 kb on - strand, within Psyr_3380at 4039.059 kb on - strand, within Psyr_3380at 4039.059 kb on - strand, within Psyr_3380at 4039.059 kb on - strand, within Psyr_3380at 4039.059 kb on - strand, within Psyr_3380at 4039.059 kb on - strandat 4039.059 kb on - strand, within Psyr_3380at 4039.059 kb on - strand, within Psyr_3380at 4039.059 kb on - strand, within Psyr_3380at 4039.059 kb on - strand, within Psyr_3380at 4039.059 kb on - strand, within Psyr_3380at 4039.059 kb on - strand, within Psyr_3380at 4039.059 kb on - strand, within Psyr_3380at 4039.059 kb on - strand, within Psyr_3380at 4039.064 kb on + strand, within Psyr_3380at 4039.064 kb on + strand, within Psyr_3380at 4039.064 kb on + strand, within Psyr_3380at 4039.064 kb on + strand, within Psyr_3380at 4039.064 kb on + strand, within Psyr_3380at 4039.064 kb on + strand, within Psyr_3380at 4039.064 kb on + strand, within Psyr_3380at 4039.064 kb on + strand, within Psyr_3380at 4039.064 kb on + strand, within Psyr_3380at 4039.064 kb on + strand, within Psyr_3380at 4039.064 kb on + strand, within Psyr_3380at 4039.065 kb on - strand, within Psyr_3380at 4039.065 kb on - strand, within Psyr_3380at 4039.065 kb on - strand, within Psyr_3380at 4039.065 kb on - strand, within Psyr_3380at 4039.065 kb on - strand, within Psyr_3380at 4039.065 kb on - strand, within Psyr_3380at 4039.547 kb on + strand, within Psyr_3380at 4039.547 kb on + strand, within Psyr_3380at 4039.548 kb on - strand, within Psyr_3380at 4039.548 kb on - strand, within Psyr_3380at 4039.860 kb on - strandat 4039.860 kb on - strandat 4039.860 kb on - strandat 4039.921 kb on + strandat 4040.033 kb on - strand, within Psyr_3381at 4040.798 kb on - strand, within Psyr_3381

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nalidixic 12.5 ug/ml
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4,037,977 + Psyr_3378 0.62 +0.1
4,037,978 - Psyr_3378 0.62 -0.4
4,037,978 - Psyr_3378 0.62 -0.4
4,038,520 + Psyr_3378 0.88 +0.4
4,038,738 + -0.6
4,038,873 + Psyr_3379 0.54 +0.9
4,038,907 + Psyr_3379 0.70 +2.2
4,038,907 + Psyr_3379 0.70 -0.4
4,038,907 + Psyr_3379 0.70 +0.8
4,038,907 + Psyr_3379 0.70 -0.7
4,038,907 + Psyr_3379 0.70 +0.8
4,038,907 + Psyr_3379 0.70 +0.6
4,038,907 + Psyr_3379 0.70 +1.2
4,038,908 - Psyr_3379 0.71 -0.5
4,038,908 - Psyr_3379 0.71 -1.2
4,038,908 - Psyr_3379 0.71 +0.3
4,038,913 + Psyr_3379 0.73 -1.1
4,038,913 + Psyr_3379 0.73 -2.1
4,038,913 + Psyr_3379 0.73 -0.6
4,038,913 + Psyr_3379 0.73 +1.2
4,038,913 + Psyr_3379 0.73 +0.6
4,038,913 + Psyr_3379 0.73 -1.4
4,038,914 - Psyr_3379 0.74 -0.6
4,038,914 - Psyr_3379 0.74 +0.6
4,038,915 + Psyr_3379 0.74 -0.3
4,038,915 + Psyr_3379 0.74 +1.2
4,038,916 - Psyr_3379 0.75 -0.6
4,038,916 - Psyr_3379 0.75 -0.5
4,038,916 - Psyr_3379 0.75 +0.6
4,038,916 - Psyr_3379 0.75 +0.2
4,038,946 + Psyr_3379 0.89 +1.2
4,038,946 + Psyr_3379 0.89 +1.1
4,038,947 - Psyr_3379 0.90 +0.5
4,038,947 - Psyr_3379 0.90 -2.7
4,038,947 - Psyr_3379 0.90 +0.8
4,038,947 - Psyr_3379 0.90 +0.0
4,039,039 - -1.1
4,039,039 - -1.6
4,039,055 + Psyr_3380 0.10 -0.1
4,039,055 + Psyr_3380 0.10 -0.8
4,039,055 + Psyr_3380 0.10 -1.6
4,039,055 + Psyr_3380 0.10 +1.2
4,039,055 + Psyr_3380 0.10 -0.8
4,039,055 + Psyr_3380 0.10 +0.6
4,039,055 + Psyr_3380 0.10 -0.4
4,039,055 + Psyr_3380 0.10 -0.4
4,039,056 - Psyr_3380 0.10 -0.2
4,039,056 - Psyr_3380 0.10 -0.3
4,039,056 - Psyr_3380 0.10 -2.4
4,039,056 - Psyr_3380 0.10 -0.9
4,039,056 - Psyr_3380 0.10 -1.1
4,039,056 - Psyr_3380 0.10 -0.6
4,039,056 - Psyr_3380 0.10 -0.4
4,039,056 - Psyr_3380 0.10 -1.1
4,039,056 - Psyr_3380 0.10 -1.0
4,039,056 - Psyr_3380 0.10 -0.9
4,039,056 - Psyr_3380 0.10 -0.3
4,039,058 + Psyr_3380 0.11 -0.5
4,039,058 + Psyr_3380 0.11 -0.2
4,039,058 + Psyr_3380 0.11 -0.5
4,039,058 + Psyr_3380 0.11 +0.3
4,039,058 + Psyr_3380 0.11 +1.2
4,039,058 + Psyr_3380 0.11 +0.5
4,039,058 + Psyr_3380 0.11 -0.2
4,039,058 + Psyr_3380 0.11 -2.2
4,039,058 + Psyr_3380 0.11 +0.4
4,039,058 + Psyr_3380 0.11 +0.0
4,039,058 + Psyr_3380 0.11 -0.1
4,039,058 + +1.8
4,039,058 + Psyr_3380 0.11 -0.4
4,039,059 - Psyr_3380 0.11 -1.4
4,039,059 - Psyr_3380 0.11 +0.2
4,039,059 - Psyr_3380 0.11 +0.2
4,039,059 - Psyr_3380 0.11 +0.2
4,039,059 - Psyr_3380 0.11 +2.8
4,039,059 - Psyr_3380 0.11 -1.1
4,039,059 - Psyr_3380 0.11 -1.1
4,039,059 - Psyr_3380 0.11 -0.6
4,039,059 - Psyr_3380 0.11 -1.9
4,039,059 - -0.4
4,039,059 - Psyr_3380 0.11 -1.6
4,039,059 - Psyr_3380 0.11 -0.4
4,039,059 - Psyr_3380 0.11 +1.6
4,039,059 - Psyr_3380 0.11 -1.8
4,039,059 - Psyr_3380 0.11 -1.9
4,039,059 - Psyr_3380 0.11 -0.2
4,039,059 - Psyr_3380 0.11 -0.4
4,039,059 - Psyr_3380 0.11 +0.0
4,039,064 + Psyr_3380 0.11 +0.2
4,039,064 + Psyr_3380 0.11 -0.8
4,039,064 + Psyr_3380 0.11 +0.8
4,039,064 + Psyr_3380 0.11 -0.3
4,039,064 + Psyr_3380 0.11 +0.5
4,039,064 + Psyr_3380 0.11 +0.2
4,039,064 + Psyr_3380 0.11 +0.3
4,039,064 + Psyr_3380 0.11 -0.4
4,039,064 + Psyr_3380 0.11 +1.6
4,039,064 + Psyr_3380 0.11 -1.4
4,039,064 + Psyr_3380 0.11 +0.1
4,039,065 - Psyr_3380 0.11 -0.1
4,039,065 - Psyr_3380 0.11 -0.3
4,039,065 - Psyr_3380 0.11 +0.4
4,039,065 - Psyr_3380 0.11 -0.6
4,039,065 - Psyr_3380 0.11 -0.8
4,039,065 - Psyr_3380 0.11 -1.4
4,039,547 + Psyr_3380 0.66 +1.6
4,039,547 + Psyr_3380 0.66 +1.2
4,039,548 - Psyr_3380 0.66 -0.2
4,039,548 - Psyr_3380 0.66 +0.3
4,039,860 - +0.5
4,039,860 - -0.1
4,039,860 - +0.2
4,039,921 + +0.4
4,040,033 - Psyr_3381 0.13 +0.2
4,040,798 - Psyr_3381 0.66 -1.1

Or see this region's nucleotide sequence