Experiment: KB with Nalidixic 12.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3358 and Psyr_3359 are separated by 102 nucleotides Psyr_3359 and Psyr_3360 are separated by 6 nucleotides Psyr_3360 and Psyr_3361 are separated by 224 nucleotides
Psyr_3358: Psyr_3358 - transmembrane pair, at 4,016,146 to 4,016,625
_3358
Psyr_3359: Psyr_3359 - Phenazine biosynthesis PhzC/PhzF protein, at 4,016,728 to 4,017,561
_3359
Psyr_3360: Psyr_3360 - Major facilitator superfamily, at 4,017,568 to 4,018,719
_3360
Psyr_3361: Psyr_3361 - RarD protein, at 4,018,944 to 4,019,828
_3361
Position (kb) 4017
4018
4019 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4016.623 kb on + strand at 4016.623 kb on + strand at 4016.624 kb on - strand at 4016.624 kb on - strand at 4016.624 kb on - strand at 4016.624 kb on - strand at 4016.703 kb on - strand at 4016.725 kb on - strand at 4016.725 kb on - strand at 4016.725 kb on - strand at 4016.725 kb on - strand at 4016.725 kb on - strand at 4016.725 kb on - strand at 4016.741 kb on + strand at 4016.741 kb on + strand at 4016.741 kb on + strand at 4017.106 kb on - strand, within Psyr_3359 at 4017.144 kb on + strand, within Psyr_3359 at 4017.144 kb on + strand, within Psyr_3359 at 4017.144 kb on + strand, within Psyr_3359 at 4017.144 kb on + strand, within Psyr_3359 at 4017.144 kb on + strand, within Psyr_3359 at 4017.144 kb on + strand, within Psyr_3359 at 4017.184 kb on - strand, within Psyr_3359 at 4017.370 kb on + strand, within Psyr_3359 at 4017.452 kb on + strand, within Psyr_3359 at 4017.453 kb on - strand, within Psyr_3359 at 4017.460 kb on - strand, within Psyr_3359 at 4017.460 kb on - strand, within Psyr_3359 at 4017.559 kb on + strand at 4017.560 kb on - strand at 4017.560 kb on - strand at 4017.560 kb on - strand at 4017.708 kb on + strand, within Psyr_3360 at 4017.708 kb on + strand, within Psyr_3360 at 4017.708 kb on + strand, within Psyr_3360 at 4017.709 kb on - strand, within Psyr_3360 at 4017.709 kb on - strand, within Psyr_3360 at 4017.709 kb on - strand, within Psyr_3360 at 4017.709 kb on - strand, within Psyr_3360 at 4017.709 kb on - strand, within Psyr_3360 at 4017.709 kb on - strand, within Psyr_3360 at 4017.711 kb on + strand, within Psyr_3360 at 4017.712 kb on - strand, within Psyr_3360 at 4017.767 kb on + strand, within Psyr_3360 at 4017.767 kb on + strand, within Psyr_3360 at 4017.767 kb on + strand, within Psyr_3360 at 4017.768 kb on - strand, within Psyr_3360 at 4017.812 kb on + strand, within Psyr_3360 at 4017.989 kb on + strand, within Psyr_3360 at 4017.990 kb on - strand, within Psyr_3360 at 4018.025 kb on - strand, within Psyr_3360 at 4018.063 kb on + strand, within Psyr_3360 at 4018.064 kb on - strand, within Psyr_3360 at 4018.064 kb on - strand, within Psyr_3360 at 4018.064 kb on - strand, within Psyr_3360 at 4018.150 kb on + strand, within Psyr_3360 at 4018.150 kb on + strand, within Psyr_3360 at 4018.151 kb on - strand, within Psyr_3360 at 4018.601 kb on + strand, within Psyr_3360 at 4018.601 kb on + strand, within Psyr_3360 at 4018.601 kb on + strand, within Psyr_3360 at 4018.601 kb on + strand, within Psyr_3360 at 4018.602 kb on - strand, within Psyr_3360 at 4018.732 kb on + strand at 4018.732 kb on + strand at 4018.733 kb on - strand at 4018.773 kb on - strand at 4018.789 kb on + strand at 4018.811 kb on + strand at 4018.812 kb on - strand at 4018.812 kb on - strand at 4018.878 kb on + strand at 4018.947 kb on + strand at 4018.948 kb on - strand at 4018.948 kb on - strand at 4018.979 kb on + strand at 4018.980 kb on - strand at 4018.998 kb on + strand at 4018.998 kb on + strand at 4018.998 kb on + strand at 4018.998 kb on + strand at 4018.998 kb on + strand at 4018.998 kb on + strand at 4018.998 kb on + strand at 4018.999 kb on - strand at 4018.999 kb on - strand at 4018.999 kb on - strand at 4018.999 kb on - strand at 4018.999 kb on - strand at 4018.999 kb on - strand at 4018.999 kb on - strand at 4018.999 kb on - strand at 4018.999 kb on - strand at 4018.999 kb on - strand at 4018.999 kb on - strand at 4018.999 kb on - strand at 4018.999 kb on - strand at 4018.999 kb on - strand at 4018.999 kb on - strand at 4018.999 kb on - strand at 4018.999 kb on - strand at 4019.004 kb on + strand at 4019.005 kb on - strand at 4019.005 kb on - strand at 4019.005 kb on - strand at 4019.006 kb on + strand at 4019.006 kb on + strand at 4019.006 kb on + strand at 4019.006 kb on + strand at 4019.007 kb on - strand at 4019.007 kb on - strand at 4019.007 kb on - strand at 4019.007 kb on - strand at 4019.007 kb on - strand at 4019.007 kb on - strand at 4019.245 kb on + strand, within Psyr_3361 at 4019.256 kb on + strand, within Psyr_3361 at 4019.257 kb on - strand, within Psyr_3361 at 4019.301 kb on + strand, within Psyr_3361 at 4019.302 kb on - strand, within Psyr_3361 at 4019.319 kb on + strand, within Psyr_3361 at 4019.430 kb on + strand, within Psyr_3361 at 4019.431 kb on - strand, within Psyr_3361 at 4019.431 kb on - strand, within Psyr_3361 at 4019.565 kb on + strand, within Psyr_3361 at 4019.566 kb on - strand, within Psyr_3361 at 4019.616 kb on + strand, within Psyr_3361 at 4019.617 kb on - strand, within Psyr_3361 at 4019.617 kb on - strand, within Psyr_3361 at 4019.667 kb on + strand, within Psyr_3361 at 4019.667 kb on + strand, within Psyr_3361 at 4019.667 kb on + strand, within Psyr_3361 at 4019.668 kb on - strand, within Psyr_3361 at 4019.668 kb on - strand, within Psyr_3361
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nalidixic 12.5 ug/ml remove 4,016,623 + +0.5 4,016,623 + -0.6 4,016,624 - +1.4 4,016,624 - -1.1 4,016,624 - -0.4 4,016,624 - +0.2 4,016,703 - -0.3 4,016,725 - +1.2 4,016,725 - -0.1 4,016,725 - +0.6 4,016,725 - -2.1 4,016,725 - -0.7 4,016,725 - -0.4 4,016,741 + -1.4 4,016,741 + +0.5 4,016,741 + +0.2 4,017,106 - Psyr_3359 0.45 +0.8 4,017,144 + Psyr_3359 0.50 +1.2 4,017,144 + Psyr_3359 0.50 +0.0 4,017,144 + Psyr_3359 0.50 -1.8 4,017,144 + Psyr_3359 0.50 +0.4 4,017,144 + Psyr_3359 0.50 +0.0 4,017,144 + Psyr_3359 0.50 -0.2 4,017,184 - Psyr_3359 0.55 +0.5 4,017,370 + Psyr_3359 0.77 +0.0 4,017,452 + Psyr_3359 0.87 +0.6 4,017,453 - Psyr_3359 0.87 -0.8 4,017,460 - Psyr_3359 0.88 +0.1 4,017,460 - Psyr_3359 0.88 -1.1 4,017,559 + -0.8 4,017,560 - +0.8 4,017,560 - -0.4 4,017,560 - -0.8 4,017,708 + Psyr_3360 0.12 +1.6 4,017,708 + Psyr_3360 0.12 +0.4 4,017,708 + Psyr_3360 0.12 +0.4 4,017,709 - Psyr_3360 0.12 +0.0 4,017,709 - Psyr_3360 0.12 -0.2 4,017,709 - Psyr_3360 0.12 +0.1 4,017,709 - Psyr_3360 0.12 -0.5 4,017,709 - Psyr_3360 0.12 +1.8 4,017,709 - Psyr_3360 0.12 +0.0 4,017,711 + Psyr_3360 0.12 -1.1 4,017,712 - Psyr_3360 0.12 +0.2 4,017,767 + Psyr_3360 0.17 +1.0 4,017,767 + Psyr_3360 0.17 +1.0 4,017,767 + Psyr_3360 0.17 +0.7 4,017,768 - Psyr_3360 0.17 +1.2 4,017,812 + Psyr_3360 0.21 +0.7 4,017,989 + Psyr_3360 0.37 -1.8 4,017,990 - Psyr_3360 0.37 -0.5 4,018,025 - Psyr_3360 0.40 +0.0 4,018,063 + Psyr_3360 0.43 +0.2 4,018,064 - Psyr_3360 0.43 -0.5 4,018,064 - Psyr_3360 0.43 +1.1 4,018,064 - Psyr_3360 0.43 +0.2 4,018,150 + Psyr_3360 0.51 -0.1 4,018,150 + Psyr_3360 0.51 -2.2 4,018,151 - Psyr_3360 0.51 +0.6 4,018,601 + Psyr_3360 0.90 +0.1 4,018,601 + Psyr_3360 0.90 -0.4 4,018,601 + Psyr_3360 0.90 -0.5 4,018,601 + Psyr_3360 0.90 +0.9 4,018,602 - Psyr_3360 0.90 +1.1 4,018,732 + -0.4 4,018,732 + +0.0 4,018,733 - +0.4 4,018,773 - +1.2 4,018,789 + +1.0 4,018,811 + -0.4 4,018,812 - -0.3 4,018,812 - -0.2 4,018,878 + -0.2 4,018,947 + -0.1 4,018,948 - +1.2 4,018,948 - -0.2 4,018,979 + +1.8 4,018,980 - -0.8 4,018,998 + -0.1 4,018,998 + +0.5 4,018,998 + +0.6 4,018,998 + -1.9 4,018,998 + -0.4 4,018,998 + +0.2 4,018,998 + -1.3 4,018,999 - +0.7 4,018,999 - -1.4 4,018,999 - +1.2 4,018,999 - -1.1 4,018,999 - +0.5 4,018,999 - -0.1 4,018,999 - +0.1 4,018,999 - +1.1 4,018,999 - -0.4 4,018,999 - -0.5 4,018,999 - +0.4 4,018,999 - -1.4 4,018,999 - -0.2 4,018,999 - +0.6 4,018,999 - +0.1 4,018,999 - +0.2 4,018,999 - -0.2 4,019,004 + -0.9 4,019,005 - +1.8 4,019,005 - -0.6 4,019,005 - +1.0 4,019,006 + +1.7 4,019,006 + +0.2 4,019,006 + +0.6 4,019,006 + -0.6 4,019,007 - +0.4 4,019,007 - -0.4 4,019,007 - +1.2 4,019,007 - -0.1 4,019,007 - -0.3 4,019,007 - -1.4 4,019,245 + Psyr_3361 0.34 -0.3 4,019,256 + Psyr_3361 0.35 +0.9 4,019,257 - Psyr_3361 0.35 -0.8 4,019,301 + Psyr_3361 0.40 +0.8 4,019,302 - Psyr_3361 0.40 -1.1 4,019,319 + Psyr_3361 0.42 +1.2 4,019,430 + Psyr_3361 0.55 +1.2 4,019,431 - Psyr_3361 0.55 +1.2 4,019,431 - Psyr_3361 0.55 -0.5 4,019,565 + Psyr_3361 0.70 +0.8 4,019,566 - Psyr_3361 0.70 -1.4 4,019,616 + Psyr_3361 0.76 -0.1 4,019,617 - Psyr_3361 0.76 -1.1 4,019,617 - Psyr_3361 0.76 -1.4 4,019,667 + Psyr_3361 0.82 -0.1 4,019,667 + Psyr_3361 0.82 +0.6 4,019,667 + Psyr_3361 0.82 -1.1 4,019,668 - Psyr_3361 0.82 -0.0 4,019,668 - Psyr_3361 0.82 +1.2
Or see this region's nucleotide sequence