Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3325

Experiment: KB with Nalidixic 12.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Nalidixic 12.5 ug/ml
3,975,653	+				+0.6
3,975,729	+				-2.5
3,975,729	+				-0.2
3,975,729	+				-0.5
3,975,730	-				+2.3
3,975,730	-				+1.0
3,975,763	+				+0.4
3,975,763	+				-0.3
3,975,763	+				+0.7
3,975,763	+				-0.4
3,975,763	+				-1.7
3,975,763	+				-1.1
3,975,763	+				-0.1
3,975,764	-				+1.2
3,975,767	+				-0.2
3,975,767	+				-1.8
3,975,767	+				-2.5
3,975,767	+				-1.2
3,975,767	+				+0.2
3,975,767	+				-2.2
3,975,768	-				+0.5
3,975,768	-				+0.4
3,975,768	-				+1.2
3,975,825	+				+1.0
3,975,872	+				-0.8
3,975,873	-				+7.1
3,975,873	-				+7.2
3,975,873	-				+6.8
3,976,009	-		Psyr_3324	0.22	+2.5
3,976,015	+		Psyr_3324	0.23	+6.6
3,976,015	+		Psyr_3324	0.23	+8.5
3,976,015	+		Psyr_3324	0.23	+6.1
3,976,015	+		Psyr_3324	0.23	+6.5
3,976,015	+		Psyr_3324	0.23	+7.3
3,976,016	-		Psyr_3324	0.23	+7.1
3,976,016	-		Psyr_3324	0.23	+6.2
3,976,016	-		Psyr_3324	0.23	+6.5
3,976,016	-		Psyr_3324	0.23	+6.6
3,976,016	-		Psyr_3324	0.23	+6.2
3,976,016	-		Psyr_3324	0.23	+7.6
3,976,479	-				+5.3
3,976,700	+		Psyr_3325	0.15	+0.4
3,976,780	+		Psyr_3325	0.22	-0.6
3,976,780	+		Psyr_3325	0.22	+0.4
3,976,780	+		Psyr_3325	0.22	+1.2
3,976,780	+		Psyr_3325	0.22	+0.4
3,976,781	-		Psyr_3325	0.22	+1.1
3,976,781	-		Psyr_3325	0.22	+0.9
3,976,781	-		Psyr_3325	0.22	-0.2
3,976,781	-		Psyr_3325	0.22	-1.6
3,976,855	-		Psyr_3325	0.27	-0.1
3,976,855	-		Psyr_3325	0.27	+1.7
3,976,912	+		Psyr_3325	0.32	-0.2
3,976,912	+		Psyr_3325	0.32	-0.4
3,976,913	-		Psyr_3325	0.32	+0.3
3,977,047	+		Psyr_3325	0.42	-1.6
3,977,061	+		Psyr_3325	0.43	-1.5
3,977,061	+		Psyr_3325	0.43	+0.9
3,977,061	+		Psyr_3325	0.43	-2.2
3,977,062	-		Psyr_3325	0.43	+1.4
3,977,062	-		Psyr_3325	0.43	+0.5
3,977,062	-		Psyr_3325	0.43	+0.7
3,977,062	-		Psyr_3325	0.43	+1.0
3,977,062	-		Psyr_3325	0.43	+2.2
3,977,105	+		Psyr_3325	0.47	+0.2
3,977,105	+		Psyr_3325	0.47	+0.6
3,977,185	+		Psyr_3325	0.53	+0.1
3,977,317	+		Psyr_3325	0.63	-0.8
3,977,317	+		Psyr_3325	0.63	+1.2
3,977,317	+		Psyr_3325	0.63	-1.9
3,977,318	-		Psyr_3325	0.63	+0.6
3,977,318	-		Psyr_3325	0.63	+1.2
3,977,318	-		Psyr_3325	0.63	-0.4
3,977,318	-		Psyr_3325	0.63	+0.2
3,977,318	-		Psyr_3325	0.63	-1.2
3,977,318	-		Psyr_3325	0.63	+0.2
3,977,318	-		Psyr_3325	0.63	+0.2
3,977,318	-		Psyr_3325	0.63	+0.8
3,977,323	+		Psyr_3325	0.64	+0.4
3,977,323	+		Psyr_3325	0.64	-0.5
3,977,323	+		Psyr_3325	0.64	+0.1
3,977,323	+		Psyr_3325	0.64	+0.8
3,977,324	-		Psyr_3325	0.64	+1.8
3,977,324	-		Psyr_3325	0.64	-0.7
3,977,324	-		Psyr_3325	0.64	+1.2
3,977,392	+		Psyr_3325	0.69	+0.1
3,977,392	+		Psyr_3325	0.69	-1.1
3,977,392	+		Psyr_3325	0.69	-0.2
3,977,392	+		Psyr_3325	0.69	+0.8
3,977,393	-		Psyr_3325	0.69	+0.2
3,977,393	-		Psyr_3325	0.69	-2.2
3,977,393	-		Psyr_3325	0.69	-0.1
3,977,393	-		Psyr_3325	0.69	-0.4
3,977,393	-		Psyr_3325	0.69	-1.2
3,977,393	-		Psyr_3325	0.69	+0.2
3,977,847	+				+0.5
3,977,897	+				-0.4
3,977,897	+				-0.7
3,977,897	+				-2.3
3,977,897	+				-0.2
3,977,897	+				+0.0
3,977,898	-				+0.2
3,977,898	-				+0.1
3,977,981	-		Psyr_3326	0.14	-0.8
3,978,172	+		Psyr_3326	0.29	+0.4
3,978,191	-		Psyr_3326	0.30	-0.4
3,978,210	-		Psyr_3326	0.32	-0.8
3,978,210	-		Psyr_3326	0.32	-0.5
3,978,210	-		Psyr_3326	0.32	+2.2
3,978,240	+		Psyr_3326	0.34	+0.6
3,978,240	+		Psyr_3326	0.34	+1.8
3,978,240	+		Psyr_3326	0.34	+1.2
3,978,240	+		Psyr_3326	0.34	-1.1
3,978,241	-		Psyr_3326	0.34	-0.6
3,978,241	-		Psyr_3326	0.34	-0.8
3,978,250	+		Psyr_3326	0.35	-0.6
3,978,279	+		Psyr_3326	0.37	-1.4
3,978,279	+		Psyr_3326	0.37	+0.1
3,978,280	-		Psyr_3326	0.37	+1.0
3,978,280	-		Psyr_3326	0.37	+0.5
3,978,280	-		Psyr_3326	0.37	+1.2
3,978,280	-		Psyr_3326	0.37	-2.1
3,978,285	+		Psyr_3326	0.38	+0.1
3,978,285	+		Psyr_3326	0.38	-0.4
3,978,508	-		Psyr_3326	0.55	-1.7
3,978,696	+		Psyr_3326	0.69	+0.2
3,978,696	+		Psyr_3326	0.69	-0.8
3,978,697	-		Psyr_3326	0.69	+0.9