Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3314

Experiment: KB with Nalidixic 12.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3313 and Psyr_3314 are separated by 65 nucleotidesPsyr_3314 and Psyr_3315 are separated by 83 nucleotides Psyr_3313: Psyr_3313 - C4-dicarboxylate transporter/malic acid transport protein, at 3,965,087 to 3,966,247 _3313 Psyr_3314: Psyr_3314 - conserved hypothetical protein, at 3,966,313 to 3,967,245 _3314 Psyr_3315: Psyr_3315 - conserved hypothetical protein, at 3,967,329 to 3,967,673 _3315 Position (kb) 3966 3967 3968Strain fitness (log2 ratio) -2 -1 0 1 2at 3965.315 kb on + strand, within Psyr_3313at 3965.315 kb on + strand, within Psyr_3313at 3965.315 kb on + strand, within Psyr_3313at 3965.315 kb on + strand, within Psyr_3313at 3965.315 kb on + strand, within Psyr_3313at 3965.315 kb on + strand, within Psyr_3313at 3965.316 kb on - strand, within Psyr_3313at 3965.316 kb on - strand, within Psyr_3313at 3965.316 kb on - strand, within Psyr_3313at 3965.316 kb on - strand, within Psyr_3313at 3965.316 kb on - strand, within Psyr_3313at 3965.316 kb on - strand, within Psyr_3313at 3965.316 kb on - strand, within Psyr_3313at 3965.316 kb on - strand, within Psyr_3313at 3965.334 kb on + strand, within Psyr_3313at 3965.693 kb on + strand, within Psyr_3313at 3965.693 kb on + strand, within Psyr_3313at 3965.693 kb on + strand, within Psyr_3313at 3965.693 kb on + strand, within Psyr_3313at 3965.693 kb on + strand, within Psyr_3313at 3965.693 kb on + strand, within Psyr_3313at 3965.694 kb on - strand, within Psyr_3313at 3965.694 kb on - strand, within Psyr_3313at 3965.694 kb on - strand, within Psyr_3313at 3965.694 kb on - strand, within Psyr_3313at 3965.694 kb on - strand, within Psyr_3313at 3965.694 kb on - strand, within Psyr_3313at 3965.694 kb on - strand, within Psyr_3313at 3965.697 kb on + strand, within Psyr_3313at 3965.697 kb on + strand, within Psyr_3313at 3965.697 kb on + strand, within Psyr_3313at 3965.697 kb on + strand, within Psyr_3313at 3965.697 kb on + strand, within Psyr_3313at 3965.697 kb on + strand, within Psyr_3313at 3965.697 kb on + strand, within Psyr_3313at 3965.697 kb on + strand, within Psyr_3313at 3965.697 kb on + strand, within Psyr_3313at 3965.697 kb on + strand, within Psyr_3313at 3966.059 kb on + strand, within Psyr_3313at 3966.059 kb on + strand, within Psyr_3313at 3966.059 kb on + strand, within Psyr_3313at 3966.060 kb on - strand, within Psyr_3313at 3966.060 kb on - strand, within Psyr_3313at 3966.168 kb on + strandat 3966.169 kb on - strandat 3966.172 kb on + strandat 3966.172 kb on + strandat 3966.172 kb on + strandat 3966.172 kb on + strandat 3966.172 kb on + strandat 3966.172 kb on + strandat 3966.172 kb on + strandat 3966.172 kb on + strandat 3966.173 kb on - strandat 3966.173 kb on - strandat 3966.173 kb on - strandat 3966.261 kb on + strandat 3966.261 kb on + strandat 3966.262 kb on - strandat 3966.262 kb on - strandat 3966.262 kb on - strandat 3966.291 kb on - strandat 3966.392 kb on - strandat 3966.443 kb on - strand, within Psyr_3314at 3966.443 kb on - strand, within Psyr_3314at 3966.496 kb on + strand, within Psyr_3314at 3966.496 kb on + strand, within Psyr_3314at 3966.574 kb on + strand, within Psyr_3314at 3966.574 kb on + strand, within Psyr_3314at 3966.694 kb on + strand, within Psyr_3314at 3966.902 kb on - strand, within Psyr_3314at 3966.902 kb on - strand, within Psyr_3314at 3966.902 kb on - strand, within Psyr_3314at 3966.902 kb on - strand, within Psyr_3314at 3966.939 kb on + strand, within Psyr_3314at 3967.018 kb on + strand, within Psyr_3314at 3967.018 kb on + strand, within Psyr_3314at 3967.018 kb on + strand, within Psyr_3314at 3967.018 kb on + strand, within Psyr_3314at 3967.018 kb on + strand, within Psyr_3314at 3967.018 kb on + strand, within Psyr_3314at 3967.019 kb on - strand, within Psyr_3314at 3967.019 kb on - strand, within Psyr_3314at 3967.019 kb on - strand, within Psyr_3314at 3967.019 kb on - strand, within Psyr_3314at 3967.019 kb on - strand, within Psyr_3314at 3967.021 kb on + strand, within Psyr_3314at 3967.022 kb on - strandat 3967.075 kb on + strand, within Psyr_3314at 3967.075 kb on + strand, within Psyr_3314at 3967.105 kb on + strand, within Psyr_3314at 3967.106 kb on - strand, within Psyr_3314at 3967.106 kb on - strand, within Psyr_3314at 3967.106 kb on - strand, within Psyr_3314at 3967.111 kb on + strand, within Psyr_3314at 3967.111 kb on + strand, within Psyr_3314at 3967.111 kb on + strand, within Psyr_3314at 3967.111 kb on + strand, within Psyr_3314at 3967.111 kb on + strand, within Psyr_3314at 3967.111 kb on + strand, within Psyr_3314at 3967.111 kb on + strand, within Psyr_3314at 3967.112 kb on - strand, within Psyr_3314at 3967.112 kb on - strand, within Psyr_3314at 3967.112 kb on - strand, within Psyr_3314at 3967.112 kb on - strand, within Psyr_3314at 3967.112 kb on - strand, within Psyr_3314at 3967.112 kb on - strand, within Psyr_3314at 3967.299 kb on + strandat 3967.356 kb on + strandat 3967.356 kb on + strandat 3967.357 kb on - strandat 3967.403 kb on + strand, within Psyr_3315at 3967.409 kb on + strand, within Psyr_3315at 3967.682 kb on + strandat 3967.824 kb on + strandat 3967.875 kb on - strandat 3967.875 kb on - strandat 3967.879 kb on + strandat 3967.879 kb on + strandat 3967.879 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nalidixic 12.5 ug/ml
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3,965,315 + Psyr_3313 0.20 +0.7
3,965,315 + Psyr_3313 0.20 +2.0
3,965,315 + Psyr_3313 0.20 +0.2
3,965,315 + Psyr_3313 0.20 -0.9
3,965,315 + Psyr_3313 0.20 -0.0
3,965,315 + Psyr_3313 0.20 -0.4
3,965,316 - Psyr_3313 0.20 -0.9
3,965,316 - Psyr_3313 0.20 +0.7
3,965,316 - Psyr_3313 0.20 -0.5
3,965,316 - Psyr_3313 0.20 +0.0
3,965,316 - Psyr_3313 0.20 +0.1
3,965,316 - Psyr_3313 0.20 +0.1
3,965,316 - Psyr_3313 0.20 -1.4
3,965,316 - Psyr_3313 0.20 -0.8
3,965,334 + Psyr_3313 0.21 +0.2
3,965,693 + Psyr_3313 0.52 +1.6
3,965,693 + Psyr_3313 0.52 -0.4
3,965,693 + Psyr_3313 0.52 +0.1
3,965,693 + Psyr_3313 0.52 +1.0
3,965,693 + Psyr_3313 0.52 -0.2
3,965,693 + Psyr_3313 0.52 +1.2
3,965,694 - Psyr_3313 0.52 -0.8
3,965,694 - Psyr_3313 0.52 -0.4
3,965,694 - Psyr_3313 0.52 -1.4
3,965,694 - Psyr_3313 0.52 -0.5
3,965,694 - Psyr_3313 0.52 +0.3
3,965,694 - Psyr_3313 0.52 -1.1
3,965,694 - Psyr_3313 0.52 -0.4
3,965,697 + Psyr_3313 0.53 -0.5
3,965,697 + Psyr_3313 0.53 -1.1
3,965,697 + Psyr_3313 0.53 -0.4
3,965,697 + Psyr_3313 0.53 +0.4
3,965,697 + Psyr_3313 0.53 -0.4
3,965,697 + Psyr_3313 0.53 +0.4
3,965,697 + Psyr_3313 0.53 -1.2
3,965,697 + Psyr_3313 0.53 +0.0
3,965,697 + Psyr_3313 0.53 +2.5
3,965,697 + Psyr_3313 0.53 +0.3
3,966,059 + Psyr_3313 0.84 +2.2
3,966,059 + Psyr_3313 0.84 -2.4
3,966,059 + Psyr_3313 0.84 -2.1
3,966,060 - Psyr_3313 0.84 -2.4
3,966,060 - Psyr_3313 0.84 +0.2
3,966,168 + +0.9
3,966,169 - -0.4
3,966,172 + -0.1
3,966,172 + +0.4
3,966,172 + +0.2
3,966,172 + -0.3
3,966,172 + -1.4
3,966,172 + -1.5
3,966,172 + +0.5
3,966,172 + -0.6
3,966,173 - -2.6
3,966,173 - +0.6
3,966,173 - -0.1
3,966,261 + -1.3
3,966,261 + +0.1
3,966,262 - +1.2
3,966,262 - -0.8
3,966,262 - -2.5
3,966,291 - +2.6
3,966,392 - -0.2
3,966,443 - Psyr_3314 0.14 -1.1
3,966,443 - Psyr_3314 0.14 -0.4
3,966,496 + Psyr_3314 0.20 +1.2
3,966,496 + Psyr_3314 0.20 -0.9
3,966,574 + Psyr_3314 0.28 +0.1
3,966,574 + Psyr_3314 0.28 -0.5
3,966,694 + Psyr_3314 0.41 -0.2
3,966,902 - Psyr_3314 0.63 +0.6
3,966,902 - Psyr_3314 0.63 +0.8
3,966,902 - Psyr_3314 0.63 +1.2
3,966,902 - Psyr_3314 0.63 -0.5
3,966,939 + Psyr_3314 0.67 +0.3
3,967,018 + Psyr_3314 0.76 +1.0
3,967,018 + Psyr_3314 0.76 +1.6
3,967,018 + Psyr_3314 0.76 -1.8
3,967,018 + Psyr_3314 0.76 +0.1
3,967,018 + Psyr_3314 0.76 +0.8
3,967,018 + Psyr_3314 0.76 +0.2
3,967,019 - Psyr_3314 0.76 +0.0
3,967,019 - Psyr_3314 0.76 -2.6
3,967,019 - Psyr_3314 0.76 -0.1
3,967,019 - Psyr_3314 0.76 +1.2
3,967,019 - Psyr_3314 0.76 +0.2
3,967,021 + Psyr_3314 0.76 +1.5
3,967,022 - +1.2
3,967,075 + Psyr_3314 0.82 +0.8
3,967,075 + Psyr_3314 0.82 +0.4
3,967,105 + Psyr_3314 0.85 +0.9
3,967,106 - Psyr_3314 0.85 -0.9
3,967,106 - Psyr_3314 0.85 -0.5
3,967,106 - Psyr_3314 0.85 -1.6
3,967,111 + Psyr_3314 0.86 +1.2
3,967,111 + Psyr_3314 0.86 -0.0
3,967,111 + Psyr_3314 0.86 +0.9
3,967,111 + Psyr_3314 0.86 -0.4
3,967,111 + Psyr_3314 0.86 +2.6
3,967,111 + Psyr_3314 0.86 -1.7
3,967,111 + Psyr_3314 0.86 +1.9
3,967,112 - Psyr_3314 0.86 +0.2
3,967,112 - Psyr_3314 0.86 -2.5
3,967,112 - Psyr_3314 0.86 -0.8
3,967,112 - Psyr_3314 0.86 +0.2
3,967,112 - Psyr_3314 0.86 -0.4
3,967,112 - Psyr_3314 0.86 -1.4
3,967,299 + +0.5
3,967,356 + +1.2
3,967,356 + +0.7
3,967,357 - +0.2
3,967,403 + Psyr_3315 0.21 -0.9
3,967,409 + Psyr_3315 0.23 +2.1
3,967,682 + -0.4
3,967,824 + -0.7
3,967,875 - +1.2
3,967,875 - -1.8
3,967,879 + +0.4
3,967,879 + -0.8
3,967,879 + +1.5

Or see this region's nucleotide sequence