Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3277

Experiment: KB with Nalidixic 12.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Nalidixic 12.5 ug/ml
3,923,929	+				+1.2
3,923,929	+				-1.2
3,923,930	-				+0.0
3,923,930	-				-0.4
3,923,930	-				+2.0
3,923,930	-				-0.5
3,923,965	+		Psyr_3276	0.11	-1.0
3,923,965	+		Psyr_3276	0.11	+0.5
3,923,966	-		Psyr_3276	0.11	+2.2
3,924,071	+		Psyr_3276	0.22	-1.0
3,924,072	-		Psyr_3276	0.22	+2.1
3,924,072	-		Psyr_3276	0.22	-1.6
3,924,155	-		Psyr_3276	0.30	-0.1
3,924,292	+		Psyr_3276	0.44	-2.5
3,924,293	-		Psyr_3276	0.44	-0.3
3,924,410	+		Psyr_3276	0.56	-1.0
3,924,410	+		Psyr_3276	0.56	+0.2
3,924,410	+		Psyr_3276	0.56	+0.4
3,924,410	+		Psyr_3276	0.56	+1.2
3,924,412	+		Psyr_3276	0.56	+0.3
3,924,412	+		Psyr_3276	0.56	+0.1
3,924,412	+		Psyr_3276	0.56	-0.4
3,924,412	+		Psyr_3276	0.56	-0.6
3,924,413	-		Psyr_3276	0.56	+0.5
3,924,413	-		Psyr_3276	0.56	+0.6
3,924,413	-		Psyr_3276	0.56	-1.9
3,924,413	-		Psyr_3276	0.56	-1.1
3,924,487	+		Psyr_3276	0.63	-0.6
3,924,487	+		Psyr_3276	0.63	-1.9
3,924,601	+		Psyr_3276	0.75	-1.4
3,924,602	-		Psyr_3276	0.75	-0.9
3,924,602	-		Psyr_3276	0.75	-0.2
3,924,602	-		Psyr_3276	0.75	+0.0
3,924,631	+		Psyr_3276	0.78	-2.4
3,924,631	+		Psyr_3276	0.78	+1.1
3,924,632	-		Psyr_3276	0.78	+0.5
3,924,632	-		Psyr_3276	0.78	+0.6
3,924,641	-		Psyr_3276	0.79	-1.4
3,924,688	+		Psyr_3276	0.84	-1.2
3,924,688	+		Psyr_3276	0.84	-3.2
3,924,689	-		Psyr_3276	0.84	-0.1
3,924,689	-		Psyr_3276	0.84	-1.6
3,924,740	+		Psyr_3276	0.89	+0.4
3,924,741	-		Psyr_3276	0.89	-0.9
3,924,851	+				-1.8
3,924,852	-				-1.9
3,924,917	+				-1.1
3,924,917	+				-0.4
3,924,917	+				+0.6
3,924,917	+				+0.7
3,924,917	+				+1.3
3,924,917	+				+0.2
3,924,917	+				+0.8
3,924,917	+				+1.2
3,924,918	-				-1.6
3,925,251	+		Psyr_3277	0.32	-0.4
3,925,251	+		Psyr_3277	0.32	+0.2
3,925,252	-		Psyr_3277	0.32	-0.9
3,925,252	-		Psyr_3277	0.32	-1.2
3,925,284	+		Psyr_3277	0.35	-0.6
3,925,284	+		Psyr_3277	0.35	+0.8
3,925,285	-		Psyr_3277	0.35	+1.2
3,925,285	-		Psyr_3277	0.35	-1.7
3,925,285	-		Psyr_3277	0.35	-1.6
3,925,285	-		Psyr_3277	0.35	-1.6
3,925,285	-		Psyr_3277	0.35	-0.4
3,925,290	+		Psyr_3277	0.35	-0.6
3,925,290	+		Psyr_3277	0.35	+1.2
3,925,291	-		Psyr_3277	0.35	-0.0
3,925,291	-		Psyr_3277	0.35	+1.6
3,925,291	-		Psyr_3277	0.35	-1.2
3,925,291	-		Psyr_3277	0.35	-2.1
3,925,291	-		Psyr_3277	0.35	-0.9
3,925,291	-		Psyr_3277	0.35	-0.0
3,925,445	-		Psyr_3277	0.48	-1.8
3,925,445	-		Psyr_3277	0.48	-1.8
3,925,595	-		Psyr_3277	0.60	-0.8
3,925,684	+		Psyr_3277	0.67	+0.3
3,925,685	-		Psyr_3277	0.67	-0.7
3,925,698	+		Psyr_3277	0.68	-2.2
3,925,698	+		Psyr_3277	0.68	+1.2
3,925,698	+		Psyr_3277	0.68	-0.4
3,925,698	+		Psyr_3277	0.68	-1.6
3,925,699	-		Psyr_3277	0.68	-1.8
3,925,699	-		Psyr_3277	0.68	+1.0
3,925,699	-		Psyr_3277	0.68	-1.1
3,925,747	+		Psyr_3277	0.72	-0.4
3,925,876	-		Psyr_3277	0.82	+0.4
3,926,006	+				+0.5
3,926,006	+				-0.8
3,926,006	+				+0.9
3,926,006	+				+0.6
3,926,006	+				+2.8
3,926,007	-				-1.5
3,926,007	-				+0.8
3,926,007	-				-0.2
3,926,007	-				-2.5
3,926,007	-				-1.4
3,926,028	+				-0.9
3,926,057	+				+0.6
3,926,058	-				-0.5
3,926,089	+				-0.3
3,926,090	-				-1.4
3,926,098	+				+1.2
3,926,099	-				-0.4
3,926,099	-				-0.6
3,926,099	-				-1.6
3,926,195	+		Psyr_3278	0.13	-0.6
3,926,195	+		Psyr_3278	0.13	-1.0
3,926,195	+		Psyr_3278	0.13	-0.1
3,926,195	+		Psyr_3278	0.13	-0.4
3,926,195	+		Psyr_3278	0.13	-0.8
3,926,195	+		Psyr_3278	0.13	+1.6
3,926,195	+		Psyr_3278	0.13	-0.8
3,926,196	-		Psyr_3278	0.13	-1.6
3,926,196	-		Psyr_3278	0.13	+0.5
3,926,196	-		Psyr_3278	0.13	-0.1
3,926,196	-		Psyr_3278	0.13	-0.6
3,926,196	-		Psyr_3278	0.13	-0.0
3,926,364	+		Psyr_3278	0.34	+2.5
3,926,383	-		Psyr_3278	0.37	-0.9
3,926,446	+		Psyr_3278	0.45	+0.2
3,926,446	+		Psyr_3278	0.45	-1.1
3,926,546	+		Psyr_3278	0.57	-2.3
3,926,732	-		Psyr_3278	0.81	-1.8
3,926,815	+				+0.4
3,926,816	-				-1.1
3,926,816	-				-2.6
3,926,816	-				-1.1
3,926,910	+				-1.2
3,926,911	-				+0.2
3,926,911	-				-1.0
3,926,960	+				+0.6
3,926,960	+				+0.2
3,926,960	+				+1.0
3,926,961	-				+0.6
3,926,961	-				+0.2
3,926,961	-				-2.2
3,926,970	-				-1.1
3,927,038	+				+0.6
3,927,038	+				-1.9
3,927,038	+				+1.2
3,927,039	-				-0.8
3,927,092	+				+1.1
3,927,092	+				-1.2
3,927,093	-				+2.2
3,927,093	-				-1.9
3,927,093	-				-2.9