Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3250

Experiment: KB with Nalidixic 12.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3249 and Psyr_3250 are separated by 42 nucleotidesPsyr_3250 and Psyr_3251 are separated by 111 nucleotides Psyr_3249: Psyr_3249 - conserved hypothetical protein, at 3,892,551 to 3,893,954 _3249 Psyr_3250: Psyr_3250 - Helix-turn-helix motif protein, at 3,893,997 to 3,894,566 _3250 Psyr_3251: Psyr_3251 - Protein of unknown function DUF6, at 3,894,678 to 3,895,613 _3251 Position (kb) 3893 3894 3895Strain fitness (log2 ratio) -3 -2 -1 0 1at 3893.013 kb on + strand, within Psyr_3249at 3893.013 kb on + strand, within Psyr_3249at 3893.013 kb on + strand, within Psyr_3249at 3893.013 kb on + strand, within Psyr_3249at 3893.013 kb on + strand, within Psyr_3249at 3893.013 kb on + strand, within Psyr_3249at 3893.013 kb on + strand, within Psyr_3249at 3893.014 kb on - strand, within Psyr_3249at 3893.014 kb on - strand, within Psyr_3249at 3893.168 kb on + strand, within Psyr_3249at 3893.444 kb on - strand, within Psyr_3249at 3893.444 kb on - strand, within Psyr_3249at 3893.444 kb on - strand, within Psyr_3249at 3893.444 kb on - strand, within Psyr_3249at 3893.617 kb on + strand, within Psyr_3249at 3893.617 kb on + strand, within Psyr_3249at 3893.618 kb on - strand, within Psyr_3249at 3893.704 kb on + strand, within Psyr_3249at 3893.705 kb on - strand, within Psyr_3249at 3893.705 kb on - strand, within Psyr_3249at 3893.780 kb on + strand, within Psyr_3249at 3893.781 kb on - strand, within Psyr_3249at 3893.803 kb on + strand, within Psyr_3249at 3893.803 kb on + strand, within Psyr_3249at 3894.012 kb on - strandat 3894.012 kb on - strandat 3894.154 kb on + strand, within Psyr_3250at 3894.154 kb on + strand, within Psyr_3250at 3894.155 kb on - strand, within Psyr_3250at 3894.155 kb on - strand, within Psyr_3250at 3894.155 kb on - strand, within Psyr_3250at 3894.196 kb on + strand, within Psyr_3250at 3894.196 kb on + strand, within Psyr_3250at 3894.196 kb on + strand, within Psyr_3250at 3894.197 kb on - strand, within Psyr_3250at 3894.197 kb on - strand, within Psyr_3250at 3894.291 kb on - strand, within Psyr_3250at 3894.322 kb on + strand, within Psyr_3250at 3894.323 kb on - strand, within Psyr_3250at 3894.599 kb on - strandat 3894.657 kb on + strandat 3894.697 kb on + strandat 3894.876 kb on - strand, within Psyr_3251at 3894.876 kb on - strand, within Psyr_3251at 3894.996 kb on + strand, within Psyr_3251at 3894.996 kb on + strand, within Psyr_3251at 3894.996 kb on + strand, within Psyr_3251at 3894.996 kb on + strand, within Psyr_3251at 3894.996 kb on + strand, within Psyr_3251at 3894.996 kb on + strand, within Psyr_3251at 3894.997 kb on - strand, within Psyr_3251at 3894.997 kb on - strand, within Psyr_3251at 3894.997 kb on - strand, within Psyr_3251at 3894.997 kb on - strand, within Psyr_3251at 3894.997 kb on - strand, within Psyr_3251at 3895.200 kb on + strand, within Psyr_3251at 3895.201 kb on - strand, within Psyr_3251at 3895.420 kb on - strand, within Psyr_3251

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nalidixic 12.5 ug/ml
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3,893,013 + Psyr_3249 0.33 +1.6
3,893,013 + Psyr_3249 0.33 -0.3
3,893,013 + Psyr_3249 0.33 -0.3
3,893,013 + Psyr_3249 0.33 -0.8
3,893,013 + Psyr_3249 0.33 -2.2
3,893,013 + Psyr_3249 0.33 -1.9
3,893,013 + Psyr_3249 0.33 -0.8
3,893,014 - Psyr_3249 0.33 -1.1
3,893,014 - Psyr_3249 0.33 -0.3
3,893,168 + Psyr_3249 0.44 -0.3
3,893,444 - Psyr_3249 0.64 -0.5
3,893,444 - Psyr_3249 0.64 -0.6
3,893,444 - Psyr_3249 0.64 -2.6
3,893,444 - Psyr_3249 0.64 +0.2
3,893,617 + Psyr_3249 0.76 -1.1
3,893,617 + Psyr_3249 0.76 +1.2
3,893,618 - Psyr_3249 0.76 +0.2
3,893,704 + Psyr_3249 0.82 -2.0
3,893,705 - Psyr_3249 0.82 +0.3
3,893,705 - Psyr_3249 0.82 +0.4
3,893,780 + Psyr_3249 0.88 -1.6
3,893,781 - Psyr_3249 0.88 +1.2
3,893,803 + Psyr_3249 0.89 +1.2
3,893,803 + Psyr_3249 0.89 -1.2
3,894,012 - -0.6
3,894,012 - -2.2
3,894,154 + Psyr_3250 0.28 +1.0
3,894,154 + Psyr_3250 0.28 -1.1
3,894,155 - Psyr_3250 0.28 +0.4
3,894,155 - Psyr_3250 0.28 -1.7
3,894,155 - Psyr_3250 0.28 +0.7
3,894,196 + Psyr_3250 0.35 +1.2
3,894,196 + Psyr_3250 0.35 -3.2
3,894,196 + Psyr_3250 0.35 +0.6
3,894,197 - Psyr_3250 0.35 -1.9
3,894,197 - Psyr_3250 0.35 -1.8
3,894,291 - Psyr_3250 0.52 -1.3
3,894,322 + Psyr_3250 0.57 -1.3
3,894,323 - Psyr_3250 0.57 -0.3
3,894,599 - +0.2
3,894,657 + +0.7
3,894,697 + -1.1
3,894,876 - Psyr_3251 0.21 -1.9
3,894,876 - Psyr_3251 0.21 +1.4
3,894,996 + Psyr_3251 0.34 -1.6
3,894,996 + Psyr_3251 0.34 -1.1
3,894,996 + Psyr_3251 0.34 +0.7
3,894,996 + Psyr_3251 0.34 -0.2
3,894,996 + Psyr_3251 0.34 +1.5
3,894,996 + Psyr_3251 0.34 -0.6
3,894,997 - Psyr_3251 0.34 +1.3
3,894,997 - Psyr_3251 0.34 +0.2
3,894,997 - Psyr_3251 0.34 +0.8
3,894,997 - Psyr_3251 0.34 +0.2
3,894,997 - Psyr_3251 0.34 +1.2
3,895,200 + Psyr_3251 0.56 -0.8
3,895,201 - Psyr_3251 0.56 +1.5
3,895,420 - Psyr_3251 0.79 -0.3

Or see this region's nucleotide sequence