Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3220

Experiment: KB with Nalidixic 12.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Nalidixic 12.5 ug/ml
3,855,593	+		Psyr_3219	0.48	-0.5
3,855,622	-		Psyr_3219	0.49	+1.4
3,855,670	+		Psyr_3219	0.52	-0.1
3,855,760	+		Psyr_3219	0.57	-0.7
3,855,760	+		Psyr_3219	0.57	+0.5
3,855,760	+		Psyr_3219	0.57	-0.3
3,855,760	+		Psyr_3219	0.57	-0.3
3,856,039	+		Psyr_3219	0.73	-1.7
3,856,126	+		Psyr_3219	0.77	-0.6
3,856,321	-		Psyr_3219	0.88	+1.6
3,856,411	+				+0.9
3,856,448	-				+0.3
3,856,582	+				+1.0
3,856,665	+				+0.5
3,856,665	+				-0.6
3,856,665	+				-0.1
3,856,666	-				+0.4
3,856,666	-				-1.9
3,856,666	-				+4.6
3,856,666	-				+2.0
3,856,704	+				+1.0
3,856,844	+		Psyr_3220	0.21	-1.5
3,856,851	-		Psyr_3220	0.22	-0.7
3,856,851	-		Psyr_3220	0.22	-0.2
3,856,895	+		Psyr_3220	0.25	-0.3
3,856,895	+		Psyr_3220	0.25	+1.3
3,856,896	-		Psyr_3220	0.25	-1.4
3,856,896	-		Psyr_3220	0.25	-1.2
3,856,896	-		Psyr_3220	0.25	-0.1
3,856,896	-		Psyr_3220	0.25	+1.8
3,856,951	-		Psyr_3220	0.30	-0.3
3,857,110	+		Psyr_3220	0.43	+0.6
3,857,110	+		Psyr_3220	0.43	-0.2
3,857,110	+		Psyr_3220	0.43	-0.7
3,857,110	+		Psyr_3220	0.43	+0.8
3,857,110	+		Psyr_3220	0.43	+0.8
3,857,110	+		Psyr_3220	0.43	+0.1
3,857,110	+		Psyr_3220	0.43	+1.3
3,857,110	+		Psyr_3220	0.43	+0.1
3,857,110	+		Psyr_3220	0.43	-0.7
3,857,111	-		Psyr_3220	0.43	-0.3
3,857,111	-		Psyr_3220	0.43	-0.1
3,857,111	-		Psyr_3220	0.43	+0.5
3,857,111	-		Psyr_3220	0.43	-0.3
3,857,111	-		Psyr_3220	0.43	+0.2
3,857,111	-		Psyr_3220	0.43	+0.2
3,857,111	-		Psyr_3220	0.43	-0.5
3,857,137	+		Psyr_3220	0.46	+0.8
3,857,250	+		Psyr_3220	0.55	+1.3
3,857,251	-		Psyr_3220	0.55	+0.2
3,857,471	+		Psyr_3220	0.74	-1.1
3,857,471	+		Psyr_3220	0.74	-0.3
3,857,472	-		Psyr_3220	0.74	-1.1
3,857,756	-				+0.8
3,857,764	+				-0.7
3,857,765	-				+0.7
3,857,951	+				-1.6
3,857,951	+				-1.6
3,857,955	+				+0.3
3,858,068	-				-1.1
3,858,085	-				-1.3
3,858,085	-				-3.3
3,858,086	+				-1.7
3,858,086	+				-2.7
3,858,086	+				+0.4
3,858,086	+				-0.7
3,858,086	+				-0.1
3,858,086	+				-0.2
3,858,086	+				-1.6
3,858,086	+				-1.7
3,858,086	+				+0.5
3,858,087	-				-0.9
3,858,087	-				-1.6
3,858,087	-				+0.3
3,858,088	+				-1.6
3,858,088	+				-2.2
3,858,088	+				-1.0
3,858,088	+				+0.3
3,858,088	+				-0.3
3,858,088	+				-2.1
3,858,088	+				-1.6
3,858,088	+				-1.1
3,858,088	+				+0.3
3,858,089	-				-1.9
3,858,089	-				-2.1
3,858,089	-				-2.4
3,858,089	-				+0.0
3,858,089	-				-1.1
3,858,089	-				-0.7
3,858,188	+				+1.3
3,858,189	-				-1.2
3,858,245	+				-1.7
3,858,328	-				-0.3
3,858,385	+				-0.3
3,858,385	+				+0.5
3,858,385	+				-0.1
3,858,385	+				+0.5
3,858,385	+				-1.3
3,858,386	-				+0.3
3,858,386	-				+1.0
3,858,386	-				-1.7
3,858,386	-				-0.3
3,858,386	-				-0.4
3,858,474	+				-0.7
3,858,475	-				-2.5
3,858,475	-				-1.3
3,858,475	-				-2.5
3,858,475	-				-1.2
3,858,475	-				-1.1
3,858,505	-				-2.3
3,858,505	-				+1.0
3,858,519	+				+1.3
3,858,519	+				+1.5
3,858,519	+				-0.1
3,858,519	+				+0.3
3,858,519	+				+0.3
3,858,519	+				+1.3
3,858,520	-				-0.7
3,858,520	-				-0.5
3,858,520	-				-0.7
3,858,520	-				-3.3
3,858,520	-				-2.4
3,858,520	-				-1.3
3,858,520	-				-0.3
3,858,520	-				-2.8
3,858,585	+		Psyr_3221	0.12	-0.2
3,858,586	-		Psyr_3221	0.12	+0.4
3,858,606	-		Psyr_3221	0.14	+2.3