Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3210

Experiment: KB with Nalidixic 12.5 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_3209 and Psyr_3210 are separated by 106 nucleotidesPsyr_3210 and Psyr_3211 are separated by 313 nucleotides Psyr_3209: Psyr_3209 - NADH dehydrogenase subunit N, at 3,841,188 to 3,842,657 _3209 Psyr_3210: Psyr_3210 - Protein of unknown function UPF0118, at 3,842,764 to 3,843,828 _3210 Psyr_3211: Psyr_3211 - ATP-binding region, ATPase-like:Histidine kinase, HAMP region, at 3,844,142 to 3,845,461 _3211 Position (kb) 3842 3843 3844Strain fitness (log2 ratio) -2 -1 0 1 2at 3842.491 kb on - strand, within Psyr_3209at 3842.896 kb on - strand, within Psyr_3210at 3842.896 kb on - strand, within Psyr_3210at 3842.896 kb on - strand, within Psyr_3210at 3842.906 kb on + strand, within Psyr_3210at 3842.995 kb on + strand, within Psyr_3210at 3842.995 kb on + strand, within Psyr_3210at 3843.032 kb on + strand, within Psyr_3210at 3843.032 kb on + strand, within Psyr_3210at 3843.033 kb on - strand, within Psyr_3210at 3843.206 kb on - strand, within Psyr_3210at 3843.311 kb on + strand, within Psyr_3210at 3843.311 kb on + strand, within Psyr_3210at 3843.311 kb on + strand, within Psyr_3210at 3843.312 kb on - strand, within Psyr_3210at 3843.320 kb on + strand, within Psyr_3210at 3843.320 kb on + strand, within Psyr_3210at 3843.321 kb on - strand, within Psyr_3210at 3843.392 kb on + strand, within Psyr_3210at 3843.554 kb on + strand, within Psyr_3210at 3843.555 kb on - strand, within Psyr_3210at 3843.555 kb on - strand, within Psyr_3210at 3843.555 kb on - strand, within Psyr_3210at 3843.730 kb on + strandat 3843.730 kb on + strandat 3843.730 kb on + strandat 3843.731 kb on - strandat 3843.731 kb on - strandat 3843.740 kb on + strandat 3843.740 kb on + strandat 3843.760 kb on + strandat 3843.760 kb on + strandat 3843.806 kb on + strandat 3843.807 kb on - strandat 3843.807 kb on - strandat 3843.807 kb on - strandat 3843.846 kb on - strandat 3843.846 kb on - strandat 3843.876 kb on - strandat 3843.919 kb on + strandat 3843.920 kb on - strandat 3844.063 kb on + strandat 3844.064 kb on - strandat 3844.140 kb on + strandat 3844.140 kb on + strandat 3844.141 kb on - strandat 3844.141 kb on - strandat 3844.169 kb on + strandat 3844.170 kb on - strandat 3844.170 kb on - strandat 3844.170 kb on - strandat 3844.170 kb on - strandat 3844.249 kb on + strandat 3844.397 kb on + strand, within Psyr_3211at 3844.397 kb on + strand, within Psyr_3211at 3844.397 kb on + strand, within Psyr_3211at 3844.397 kb on + strand, within Psyr_3211at 3844.398 kb on - strand, within Psyr_3211at 3844.398 kb on - strand, within Psyr_3211at 3844.398 kb on - strand, within Psyr_3211at 3844.479 kb on + strand, within Psyr_3211at 3844.479 kb on + strand, within Psyr_3211at 3844.479 kb on + strand, within Psyr_3211at 3844.479 kb on + strand, within Psyr_3211at 3844.479 kb on + strand, within Psyr_3211at 3844.479 kb on + strand, within Psyr_3211at 3844.479 kb on + strand, within Psyr_3211at 3844.479 kb on + strand, within Psyr_3211at 3844.479 kb on + strand, within Psyr_3211at 3844.480 kb on - strand, within Psyr_3211at 3844.480 kb on - strand, within Psyr_3211at 3844.480 kb on - strand, within Psyr_3211at 3844.480 kb on - strand, within Psyr_3211at 3844.480 kb on - strand, within Psyr_3211at 3844.799 kb on - strand, within Psyr_3211

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nalidixic 12.5 ug/ml
remove
3,842,491 - Psyr_3209 0.89 +1.3
3,842,896 - Psyr_3210 0.12 +2.3
3,842,896 - Psyr_3210 0.12 +0.3
3,842,896 - Psyr_3210 0.12 -0.7
3,842,906 + Psyr_3210 0.13 +0.3
3,842,995 + Psyr_3210 0.22 -1.1
3,842,995 + Psyr_3210 0.22 +0.3
3,843,032 + Psyr_3210 0.25 -2.2
3,843,032 + Psyr_3210 0.25 -1.3
3,843,033 - Psyr_3210 0.25 +0.9
3,843,206 - Psyr_3210 0.42 +0.9
3,843,311 + Psyr_3210 0.51 -1.1
3,843,311 + Psyr_3210 0.51 +1.5
3,843,311 + Psyr_3210 0.51 -2.1
3,843,312 - Psyr_3210 0.51 +2.0
3,843,320 + Psyr_3210 0.52 +0.3
3,843,320 + Psyr_3210 0.52 -0.1
3,843,321 - Psyr_3210 0.52 +1.0
3,843,392 + Psyr_3210 0.59 -0.7
3,843,554 + Psyr_3210 0.74 +2.3
3,843,555 - Psyr_3210 0.74 +0.4
3,843,555 - Psyr_3210 0.74 +0.8
3,843,555 - Psyr_3210 0.74 +1.9
3,843,730 + +1.4
3,843,730 + +1.7
3,843,730 + -0.2
3,843,731 - -0.1
3,843,731 - +0.0
3,843,740 + +1.5
3,843,740 + +1.3
3,843,760 + -0.1
3,843,760 + +0.5
3,843,806 + -1.1
3,843,807 - -1.3
3,843,807 - -0.9
3,843,807 - -2.4
3,843,846 - -0.2
3,843,846 - -0.3
3,843,876 - -0.6
3,843,919 + -0.6
3,843,920 - +1.3
3,844,063 + +0.5
3,844,064 - +0.4
3,844,140 + +0.0
3,844,140 + -0.7
3,844,141 - +0.9
3,844,141 - +0.3
3,844,169 + -1.2
3,844,170 - +0.3
3,844,170 - -0.7
3,844,170 - -0.5
3,844,170 - -0.9
3,844,249 + -2.2
3,844,397 + Psyr_3211 0.19 -1.2
3,844,397 + Psyr_3211 0.19 -1.1
3,844,397 + Psyr_3211 0.19 +0.7
3,844,397 + Psyr_3211 0.19 -0.3
3,844,398 - Psyr_3211 0.19 -0.2
3,844,398 - Psyr_3211 0.19 +0.8
3,844,398 - Psyr_3211 0.19 -1.7
3,844,479 + Psyr_3211 0.26 -1.1
3,844,479 + Psyr_3211 0.26 +1.3
3,844,479 + Psyr_3211 0.26 -0.7
3,844,479 + Psyr_3211 0.26 +0.5
3,844,479 + Psyr_3211 0.26 +0.3
3,844,479 + Psyr_3211 0.26 +1.8
3,844,479 + Psyr_3211 0.26 -1.1
3,844,479 + Psyr_3211 0.26 +1.3
3,844,479 + Psyr_3211 0.26 +0.3
3,844,480 - Psyr_3211 0.26 +0.1
3,844,480 - Psyr_3211 0.26 +0.3
3,844,480 - Psyr_3211 0.26 -0.6
3,844,480 - Psyr_3211 0.26 -1.5
3,844,480 - Psyr_3211 0.26 +0.1
3,844,799 - Psyr_3211 0.50 +0.5

Or see this region's nucleotide sequence