Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3073

Experiment: KB with Nalidixic 12.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Nalidixic 12.5 ug/ml
3,671,792	+		Psyr_3072	0.32	-0.8
3,671,793	-				-0.9
3,671,832	+		Psyr_3072	0.36	+0.6
3,671,832	+		Psyr_3072	0.36	+0.4
3,671,832	+		Psyr_3072	0.36	-1.2
3,671,832	+		Psyr_3072	0.36	-1.2
3,671,832	+		Psyr_3072	0.36	+0.3
3,671,832	+		Psyr_3072	0.36	+1.2
3,671,832	+		Psyr_3072	0.36	+0.6
3,671,833	-		Psyr_3072	0.36	-1.0
3,671,833	-		Psyr_3072	0.36	+0.2
3,671,833	-		Psyr_3072	0.36	+0.8
3,671,833	-		Psyr_3072	0.36	-0.1
3,671,833	-		Psyr_3072	0.36	+0.6
3,671,848	+		Psyr_3072	0.37	+0.7
3,671,848	+		Psyr_3072	0.37	+0.6
3,671,849	-		Psyr_3072	0.37	+0.8
3,671,849	-		Psyr_3072	0.37	-2.2
3,671,849	-		Psyr_3072	0.37	+0.4
3,671,849	-		Psyr_3072	0.37	-1.4
3,671,865	+		Psyr_3072	0.39	-0.9
3,671,865	+		Psyr_3072	0.39	+0.0
3,671,866	-		Psyr_3072	0.39	-0.9
3,671,866	-		Psyr_3072	0.39	-0.8
3,671,866	-		Psyr_3072	0.39	-0.6
3,671,866	-		Psyr_3072	0.39	-0.1
3,671,868	-		Psyr_3072	0.39	-0.1
3,671,906	+		Psyr_3072	0.43	-0.6
3,671,967	+		Psyr_3072	0.49	-0.0
3,671,968	-		Psyr_3072	0.49	+1.4
3,671,968	-		Psyr_3072	0.49	-1.4
3,671,984	+		Psyr_3072	0.50	+0.4
3,671,985	-		Psyr_3072	0.50	+0.9
3,671,985	-		Psyr_3072	0.50	-1.8
3,671,985	-		Psyr_3072	0.50	+0.3
3,672,105	-		Psyr_3072	0.62	-0.2
3,672,306	+		Psyr_3072	0.82	-2.3
3,672,483	+				+1.4
3,672,565	+				-1.8
3,672,566	-				+0.0
3,672,570	-				+2.4
3,672,570	-				+2.4
3,672,588	+				-3.1
3,672,588	+				-1.6
3,672,589	-				-0.7
3,672,589	-				-1.6
3,672,589	-				+1.1
3,672,589	-				-1.2
3,672,696	-				-0.8
3,672,795	+				-1.3
3,672,795	+				+0.4
3,672,795	+				-0.2
3,672,795	+				-2.4
3,672,795	+				-1.4
3,672,795	+				-1.5
3,672,796	-				-0.9
3,672,796	-				-0.1
3,672,796	-				-0.3
3,672,901	+		Psyr_3073	0.14	-1.4
3,672,905	-		Psyr_3073	0.14	+2.0
3,672,905	-		Psyr_3073	0.14	+1.6
3,673,062	+		Psyr_3073	0.32	+2.4
3,673,069	+		Psyr_3073	0.32	-2.8
3,673,070	-		Psyr_3073	0.33	-0.9
3,673,077	+		Psyr_3073	0.33	-0.9
3,673,105	-		Psyr_3073	0.36	+0.2
3,673,119	+		Psyr_3073	0.38	+0.6
3,673,120	-		Psyr_3073	0.38	-0.3
3,673,188	-		Psyr_3073	0.46	-1.2
3,673,190	-		Psyr_3073	0.46	-0.4
3,673,190	-		Psyr_3073	0.46	-0.7
3,673,449	+		Psyr_3073	0.74	-0.1
3,673,478	+		Psyr_3073	0.77	+0.1
3,673,478	+		Psyr_3073	0.77	-0.8
3,673,478	+		Psyr_3073	0.77	+1.6
3,673,478	+		Psyr_3073	0.77	-0.1
3,673,479	-		Psyr_3073	0.77	+0.7
3,673,591	-		Psyr_3073	0.90	+1.0
3,673,693	+				+1.4
3,673,717	-				-0.4
3,673,720	+				-0.3
3,673,720	+				-0.9
3,673,773	+				-1.4
3,673,827	+				-0.1
3,673,827	+				+1.0
3,673,828	-				-0.4
3,673,828	-				-0.8
3,673,828	-				+0.5
3,673,901	+				-0.1
3,673,906	+				+0.4
3,673,906	+				-0.9
3,673,907	-				-2.2
3,673,908	+				+0.1
3,673,908	+				-2.1
3,673,908	+				-0.6
3,673,908	+				-0.1
3,673,909	-				-2.1
3,673,909	-				-2.2
3,673,909	-				-1.1
3,673,909	-				+0.4
3,673,909	-				-0.4
3,673,912	+				+0.4
3,673,912	+				+0.3
3,673,912	+				+0.8
3,673,913	-				+0.2
3,673,913	-				+0.4
3,673,918	+				+1.5
3,673,918	+				+1.5
3,673,919	-				-0.9
3,673,919	-				-0.2
3,673,928	+				-0.1
3,673,929	-				-0.9
3,673,929	-				-0.2
3,673,946	+				+0.7
3,673,946	+				+0.8
3,673,946	+				+1.0
3,673,946	+				+1.4
3,673,946	+				-1.3
3,673,946	+				-1.2
3,673,946	+				+0.6
3,673,947	-				-1.9
3,673,947	-				-2.4
3,673,947	-				-0.4
3,673,947	-				-0.9
3,673,947	-				-2.2
3,673,947	-				+0.6
3,673,947	-				+0.5
3,673,948	-				-1.5
3,673,950	-				-1.6
3,673,956	-				-2.9
3,674,002	+				+0.4
3,674,003	-				-0.2
3,674,051	-				+0.6
3,674,066	+				+0.4
3,674,066	+				-0.5
3,674,066	+				-0.2
3,674,066	+				+0.2
3,674,066	+				-1.9
3,674,067	-				-1.1
3,674,067	-				+0.1
3,674,067	-				+0.1
3,674,067	-				+0.1
3,674,067	-				+0.8
3,674,067	-				-0.3
3,674,067	-				+0.7
3,674,067	-				+1.4
3,674,231	+				-0.4
3,674,358	+		Psyr_3074	0.14	-1.3
3,674,358	+		Psyr_3074	0.14	-1.8
3,674,358	+		Psyr_3074	0.14	+0.4
3,674,358	+		Psyr_3074	0.14	-0.9
3,674,358	+		Psyr_3074	0.14	-1.9
3,674,359	-		Psyr_3074	0.14	-1.4
3,674,359	-		Psyr_3074	0.14	+3.0
3,674,359	-		Psyr_3074	0.14	-0.1
3,674,359	-		Psyr_3074	0.14	+0.6
3,674,359	-		Psyr_3074	0.14	-0.5
3,674,467	+		Psyr_3074	0.18	-0.8
3,674,578	+		Psyr_3074	0.22	-0.0