Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2918

Experiment: KB with Nalidixic 12.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Nalidixic 12.5 ug/ml
3,505,826	-				+1.5
3,506,050	+		Psyr_2917	0.24	+0.7
3,506,051	-		Psyr_2917	0.24	-1.5
3,506,051	-		Psyr_2917	0.24	+0.0
3,506,257	+		Psyr_2917	0.47	-1.2
3,506,257	+		Psyr_2917	0.47	-1.2
3,506,258	-		Psyr_2917	0.47	+2.8
3,506,258	-		Psyr_2917	0.47	-0.4
3,506,261	+		Psyr_2917	0.48	+1.5
3,506,261	+		Psyr_2917	0.48	-0.7
3,506,261	+		Psyr_2917	0.48	-0.4
3,506,261	+		Psyr_2917	0.48	-1.1
3,506,261	+		Psyr_2917	0.48	+0.6
3,506,261	+		Psyr_2917	0.48	-1.7
3,506,261	+		Psyr_2917	0.48	+0.5
3,506,261	+		Psyr_2917	0.48	+0.5
3,506,261	+		Psyr_2917	0.48	-0.2
3,506,261	+		Psyr_2917	0.48	-1.0
3,506,262	-		Psyr_2917	0.48	+1.0
3,506,262	-		Psyr_2917	0.48	+0.2
3,506,262	-		Psyr_2917	0.48	+0.6
3,506,262	-		Psyr_2917	0.48	-1.0
3,506,262	-		Psyr_2917	0.48	+0.5
3,506,262	-		Psyr_2917	0.48	-0.4
3,506,262	-		Psyr_2917	0.48	+0.9
3,506,262	-		Psyr_2917	0.48	+1.4
3,506,739	+				+3.5
3,506,739	+				+1.0
3,506,739	+				-1.1
3,506,739	+				-0.3
3,506,739	+				-0.3
3,506,739	+				+0.5
3,506,739	+				-0.6
3,506,740	-				+0.0
3,506,740	-				+0.9
3,506,740	-				+3.1
3,506,778	-				+2.5
3,507,122	+		Psyr_2918	0.37	-1.1
3,507,123	-		Psyr_2918	0.37	-0.2
3,507,208	-		Psyr_2918	0.46	-0.7
3,507,208	-		Psyr_2918	0.46	-1.7
3,507,208	-		Psyr_2918	0.46	+0.9
3,507,246	-		Psyr_2918	0.50	-1.3
3,507,246	-		Psyr_2918	0.50	+0.5
3,507,262	+		Psyr_2918	0.52	+1.2
3,507,263	-		Psyr_2918	0.52	+0.1
3,507,282	+		Psyr_2918	0.54	-0.7
3,507,282	+		Psyr_2918	0.54	-2.6
3,507,282	+		Psyr_2918	0.54	+1.3
3,507,282	+		Psyr_2918	0.54	-0.8
3,507,361	+		Psyr_2918	0.62	-2.3
3,507,478	-		Psyr_2918	0.74	-1.1
3,507,478	-		Psyr_2918	0.74	-0.7
3,507,555	+		Psyr_2918	0.82	-0.9
3,507,555	+		Psyr_2918	0.82	-2.1
3,507,556	-		Psyr_2918	0.82	+0.9
3,507,556	-		Psyr_2918	0.82	-2.0
3,507,556	-		Psyr_2918	0.82	-0.5
3,507,635	+				+0.5
3,507,635	+				-0.5
3,507,635	+				-1.1
3,507,635	+				-0.3
3,507,635	+				+0.2
3,507,635	+				+1.5
3,507,635	+				-1.1
3,507,636	-				-0.8
3,507,636	-				+0.1
3,507,826	+				-0.7
3,507,826	+				+0.5
3,507,866	+				+1.2
3,507,866	+				+0.7
3,507,866	+				+0.9
3,507,866	+				+0.5
3,507,866	+				-0.5
3,507,866	+				-1.0
3,507,867	-				+0.6
3,507,867	-				-0.9
3,507,867	-				-0.4
3,507,899	+		Psyr_2919	0.11	+1.0
3,507,899	+		Psyr_2919	0.11	-0.1
3,508,040	+		Psyr_2919	0.40	-0.5
3,508,041	-		Psyr_2919	0.40	+1.5
3,508,041	-		Psyr_2919	0.40	+0.5
3,508,041	-		Psyr_2919	0.40	+0.5
3,508,121	+		Psyr_2919	0.57	-1.0
3,508,122	-		Psyr_2919	0.57	+2.1
3,508,188	+		Psyr_2919	0.71	+0.3
3,508,188	+		Psyr_2919	0.71	+1.3
3,508,188	+		Psyr_2919	0.71	-1.7
3,508,188	+		Psyr_2919	0.71	-1.4
3,508,188	+		Psyr_2919	0.71	+0.8
3,508,188	+		Psyr_2919	0.71	+1.6
3,508,188	+		Psyr_2919	0.71	+1.0
3,508,188	+		Psyr_2919	0.71	-1.7
3,508,189	-		Psyr_2919	0.71	+0.3
3,508,189	-		Psyr_2919	0.71	+0.2
3,508,189	-		Psyr_2919	0.71	-0.1
3,508,249	+		Psyr_2919	0.84	+0.2
3,508,250	-		Psyr_2919	0.84	+0.1
3,508,250	-		Psyr_2919	0.84	-0.2
3,508,251	+		Psyr_2919	0.84	+0.8
3,508,252	-		Psyr_2919	0.85	-0.1
3,508,502	+				-1.3
3,508,503	-				+0.5
3,508,503	-				+2.1
3,508,569	+				-0.8
3,508,570	-				-0.4
3,508,570	-				-1.8
3,508,577	+				+0.8