Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2876

Experiment: KB with Nalidixic 12.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2874 and Psyr_2875 overlap by 4 nucleotidesPsyr_2875 and Psyr_2876 overlap by 14 nucleotidesPsyr_2876 and Psyr_2877 are separated by 15 nucleotides Psyr_2874: Psyr_2874 - monosaccharide ABC transporter membrane protein, CUT2 family, at 3,448,348 to 3,449,334 _2874 Psyr_2875: Psyr_2875 - monosaccharide ABC transporter membrane protein, CUT2 family, at 3,449,331 to 3,450,335 _2875 Psyr_2876: Psyr_2876 - monosaccharide ABC transporter ATP-binding protein, CUT2 family, at 3,450,322 to 3,451,893 _2876 Psyr_2877: Psyr_2877 - monosaccharide ABC transporter substrate-binding protein, CUT2 family, at 3,451,909 to 3,452,913 _2877 Position (kb) 3450 3451 3452Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3449.328 kb on + strandat 3449.493 kb on - strand, within Psyr_2875at 3449.656 kb on + strand, within Psyr_2875at 3449.656 kb on + strand, within Psyr_2875at 3449.656 kb on + strand, within Psyr_2875at 3449.656 kb on + strand, within Psyr_2875at 3449.934 kb on + strand, within Psyr_2875at 3450.318 kb on + strandat 3450.335 kb on + strandat 3450.614 kb on + strand, within Psyr_2876at 3450.614 kb on + strand, within Psyr_2876at 3450.614 kb on + strand, within Psyr_2876at 3450.614 kb on + strand, within Psyr_2876at 3450.614 kb on + strand, within Psyr_2876at 3450.614 kb on + strand, within Psyr_2876at 3450.615 kb on - strand, within Psyr_2876at 3450.615 kb on - strand, within Psyr_2876at 3450.616 kb on + strand, within Psyr_2876at 3450.616 kb on + strand, within Psyr_2876at 3450.616 kb on + strand, within Psyr_2876at 3450.617 kb on - strand, within Psyr_2876at 3451.127 kb on + strand, within Psyr_2876at 3451.128 kb on - strand, within Psyr_2876at 3451.265 kb on + strand, within Psyr_2876at 3451.266 kb on - strand, within Psyr_2876at 3451.277 kb on + strand, within Psyr_2876at 3451.278 kb on - strand, within Psyr_2876at 3451.278 kb on - strand, within Psyr_2876at 3451.417 kb on + strand, within Psyr_2876at 3451.417 kb on + strand, within Psyr_2876at 3451.418 kb on - strand, within Psyr_2876at 3451.481 kb on + strand, within Psyr_2876at 3451.482 kb on - strand, within Psyr_2876at 3451.677 kb on + strand, within Psyr_2876at 3451.677 kb on + strand, within Psyr_2876at 3451.836 kb on + strandat 3452.136 kb on - strand, within Psyr_2877at 3452.237 kb on + strand, within Psyr_2877at 3452.238 kb on - strand, within Psyr_2877at 3452.268 kb on - strand, within Psyr_2877at 3452.391 kb on - strand, within Psyr_2877at 3452.485 kb on - strand, within Psyr_2877at 3452.485 kb on - strand, within Psyr_2877at 3452.502 kb on - strand, within Psyr_2877at 3452.502 kb on - strand, within Psyr_2877at 3452.502 kb on - strand, within Psyr_2877at 3452.742 kb on - strand, within Psyr_2877at 3452.813 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nalidixic 12.5 ug/ml
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3,449,328 + -1.6
3,449,493 - Psyr_2875 0.16 +0.9
3,449,656 + Psyr_2875 0.32 -1.3
3,449,656 + Psyr_2875 0.32 -0.6
3,449,656 + Psyr_2875 0.32 +0.8
3,449,656 + Psyr_2875 0.32 -1.2
3,449,934 + Psyr_2875 0.60 +0.7
3,450,318 + -0.5
3,450,335 + -2.1
3,450,614 + Psyr_2876 0.19 +0.7
3,450,614 + Psyr_2876 0.19 -0.5
3,450,614 + Psyr_2876 0.19 -0.8
3,450,614 + Psyr_2876 0.19 +0.5
3,450,614 + Psyr_2876 0.19 +0.3
3,450,614 + Psyr_2876 0.19 +1.4
3,450,615 - Psyr_2876 0.19 +1.9
3,450,615 - Psyr_2876 0.19 -0.8
3,450,616 + Psyr_2876 0.19 -0.2
3,450,616 + Psyr_2876 0.19 +1.2
3,450,616 + Psyr_2876 0.19 +0.6
3,450,617 - Psyr_2876 0.19 -0.2
3,451,127 + Psyr_2876 0.51 +1.2
3,451,128 - Psyr_2876 0.51 -0.1
3,451,265 + Psyr_2876 0.60 +1.8
3,451,266 - Psyr_2876 0.60 +3.1
3,451,277 + Psyr_2876 0.61 -0.3
3,451,278 - Psyr_2876 0.61 +1.5
3,451,278 - Psyr_2876 0.61 -1.5
3,451,417 + Psyr_2876 0.70 -0.1
3,451,417 + Psyr_2876 0.70 -1.7
3,451,418 - Psyr_2876 0.70 +0.6
3,451,481 + Psyr_2876 0.74 +0.6
3,451,482 - Psyr_2876 0.74 -0.1
3,451,677 + Psyr_2876 0.86 +0.9
3,451,677 + Psyr_2876 0.86 -1.3
3,451,836 + +1.9
3,452,136 - Psyr_2877 0.23 -0.5
3,452,237 + Psyr_2877 0.33 -1.7
3,452,238 - Psyr_2877 0.33 +0.5
3,452,268 - Psyr_2877 0.36 +1.1
3,452,391 - Psyr_2877 0.48 -0.5
3,452,485 - Psyr_2877 0.57 +0.2
3,452,485 - Psyr_2877 0.57 -0.5
3,452,502 - Psyr_2877 0.59 -0.5
3,452,502 - Psyr_2877 0.59 -0.2
3,452,502 - Psyr_2877 0.59 -0.1
3,452,742 - Psyr_2877 0.83 -0.5
3,452,813 + -0.3

Or see this region's nucleotide sequence