Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2858

Experiment: KB with Nalidixic 12.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Nalidixic 12.5 ug/ml
3,428,284	+		Psyr_2856	0.45	-0.1
3,428,284	+		Psyr_2856	0.45	-0.9
3,428,285	-		Psyr_2856	0.45	+0.5
3,428,285	-		Psyr_2856	0.45	-0.7
3,428,285	-		Psyr_2856	0.45	-0.3
3,428,294	+		Psyr_2856	0.47	-1.9
3,428,304	+		Psyr_2856	0.48	-1.1
3,428,304	+		Psyr_2856	0.48	-1.4
3,428,305	-		Psyr_2856	0.48	+0.5
3,428,377	+		Psyr_2856	0.58	-1.4
3,428,446	+		Psyr_2856	0.67	-0.2
3,428,446	+		Psyr_2856	0.67	+1.0
3,428,446	+		Psyr_2856	0.67	-1.2
3,428,446	+		Psyr_2856	0.67	+0.5
3,428,446	+		Psyr_2856	0.67	+0.4
3,428,447	-				+0.5
3,428,447	-		Psyr_2856	0.67	-0.5
3,428,447	-		Psyr_2856	0.67	-0.3
3,428,505	+		Psyr_2856	0.75	-1.2
3,428,508	+		Psyr_2856	0.75	-0.1
3,428,509	-		Psyr_2856	0.75	-0.7
3,428,509	-		Psyr_2856	0.75	-0.1
3,428,624	+				-3.3
3,428,625	-				+1.5
3,428,625	-				-0.7
3,428,625	-				+0.2
3,428,650	+				+1.5
3,428,697	+				-1.2
3,428,698	-				+0.3
3,428,707	+				-1.3
3,428,708	-				+0.1
3,428,767	-				-0.6
3,428,770	+				-1.5
3,428,771	-				-0.5
3,428,771	-				+0.9
3,428,771	-				-2.0
3,428,854	+				-0.8
3,428,937	+		Psyr_2857	0.15	-0.3
3,428,937	+		Psyr_2857	0.15	-0.3
3,428,938	-		Psyr_2857	0.16	-1.2
3,428,938	-		Psyr_2857	0.16	+0.6
3,428,938	-		Psyr_2857	0.16	-1.1
3,428,940	+		Psyr_2857	0.16	+0.7
3,428,940	+		Psyr_2857	0.16	-0.1
3,428,941	-		Psyr_2857	0.16	+0.8
3,428,949	+		Psyr_2857	0.19	-1.3
3,428,967	-		Psyr_2857	0.23	-0.3
3,429,195	+		Psyr_2857	0.84	+0.4
3,429,196	-		Psyr_2857	0.84	-0.1
3,429,196	-		Psyr_2857	0.84	+1.5
3,429,240	+				-0.4
3,429,240	+				-0.3
3,429,241	-				-1.5
3,429,241	-				-0.8
3,429,326	+				+1.1
3,429,394	+		Psyr_2858	0.13	-0.4
3,429,394	+		Psyr_2858	0.13	+0.9
3,429,395	-		Psyr_2858	0.14	+0.5
3,429,395	-		Psyr_2858	0.14	+0.3
3,429,550	+		Psyr_2858	0.29	+1.2
3,429,581	+		Psyr_2858	0.32	-1.1
3,429,582	-		Psyr_2858	0.32	-0.5
3,429,582	-		Psyr_2858	0.32	-0.5
3,429,586	-		Psyr_2858	0.32	+0.2
3,429,586	-		Psyr_2858	0.32	-0.2
3,429,586	-		Psyr_2858	0.32	+0.2
3,429,586	-		Psyr_2858	0.32	+2.1
3,429,586	-		Psyr_2858	0.32	+0.5
3,429,660	+		Psyr_2858	0.40	+0.3
3,429,722	+		Psyr_2858	0.46	+1.5
3,429,823	+		Psyr_2858	0.56	+0.7
3,429,823	+		Psyr_2858	0.56	+0.7
3,429,824	-		Psyr_2858	0.56	-0.7
3,429,832	+		Psyr_2858	0.57	+0.5
3,429,832	+		Psyr_2858	0.57	+1.3
3,429,916	+				-1.1
3,429,916	+		Psyr_2858	0.65	-2.3
3,429,916	+		Psyr_2858	0.65	+0.0
3,429,917	-		Psyr_2858	0.65	-0.1
3,429,994	+		Psyr_2858	0.73	-0.9
3,429,995	-		Psyr_2858	0.73	+2.5
3,429,995	-		Psyr_2858	0.73	-0.1
3,430,258	+				+0.9
3,430,258	+				-1.6
3,430,258	+				-0.8
3,430,258	+				+0.2
3,430,258	+				+0.9
3,430,258	+				-1.8
3,430,258	+				-1.5
3,430,258	+				-1.3
3,430,259	-				-0.1
3,430,259	-				-0.9
3,430,259	-				-0.3
3,430,259	-				+0.5
3,430,259	-				-0.5
3,430,259	-				-0.9
3,430,259	-				-0.8
3,430,272	-				+0.5
3,430,378	+				-0.1
3,430,379	-				-0.1
3,430,388	+				-1.3
3,430,389	-				+1.2
3,430,389	-				-1.5
3,430,455	+				-1.1
3,430,456	-				+0.2
3,430,456	-				-1.1
3,430,513	+				+0.4
3,430,542	-				+0.5
3,430,542	-				+0.8
3,430,558	-				-2.3
3,430,669	-		Psyr_2859	0.27	-3.0
3,430,669	-		Psyr_2859	0.27	-1.1
3,430,783	+		Psyr_2859	0.44	-1.1
3,430,783	+		Psyr_2859	0.44	+0.7
3,430,784	-		Psyr_2859	0.45	-0.9
3,430,797	+		Psyr_2859	0.47	-1.8
3,430,881	-		Psyr_2859	0.60	+1.2
3,430,956	+		Psyr_2859	0.72	-2.9
3,431,027	-		Psyr_2859	0.83	-2.2
3,431,033	+		Psyr_2859	0.84	-1.6
3,431,037	+		Psyr_2859	0.84	+3.1
3,431,037	+		Psyr_2859	0.84	-0.1
3,431,037	+		Psyr_2859	0.84	-0.1
3,431,038	-		Psyr_2859	0.84	+0.9
3,431,038	-		Psyr_2859	0.84	-0.1
3,431,038	-		Psyr_2859	0.84	+1.1
3,431,038	-		Psyr_2859	0.84	-1.1
3,431,078	+				-0.3
3,431,079	-				+2.1
3,431,079	-				+1.1
3,431,079	-				+0.7
3,431,079	-				+0.5
3,431,079	-				+0.1
3,431,079	-				-2.1
3,431,079	-				+0.5
3,431,144	+				-1.4
3,431,145	-				+0.9
3,431,145	-				+1.5
3,431,145	-				+1.5
3,431,256	+				-1.5
3,431,256	+				-1.5
3,431,256	+				+0.2
3,431,256	+				-1.6
3,431,256	+				+1.1
3,431,256	+				-0.5
3,431,256	+				+0.9
3,431,256	+				-1.1
3,431,256	+				-2.2
3,431,256	+				+0.1
3,431,256	+				-1.1
3,431,256	+				-0.6
3,431,256	+				-0.1
3,431,256	+				-0.6
3,431,256	+				-2.2
3,431,256	+				+2.5
3,431,256	+				-0.3
3,431,257	-				+0.7
3,431,257	-				+0.1
3,431,257	-				-0.7
3,431,257	-				+0.0
3,431,257	-				+2.1
3,431,257	-				+1.9
3,431,257	-				-0.4
3,431,257	-				-2.1
3,431,257	-				-1.1
3,431,257	-				+1.5
3,431,257	-				+0.5
3,431,257	-				-2.1