Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2670

Experiment: KB with Nalidixic 12.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Nalidixic 12.5 ug/ml
3,240,536	+				-0.8
3,240,536	+				+0.4
3,240,536	+				-0.2
3,240,536	+				+0.3
3,240,537	-				+0.8
3,240,537	-				-0.1
3,240,537	-				-0.9
3,240,540	+				+0.4
3,240,540	+				-0.4
3,240,540	+				-0.6
3,240,540	+				+0.2
3,240,540	+				+1.0
3,240,620	-				+1.2
3,241,067	-		Psyr_2669	0.57	-0.6
3,241,139	-		Psyr_2669	0.66	+0.3
3,241,189	+		Psyr_2669	0.72	-1.4
3,241,247	+				-0.6
3,241,248	-		Psyr_2669	0.80	-0.0
3,241,329	+		Psyr_2669	0.90	-0.8
3,241,329	+		Psyr_2669	0.90	+0.2
3,241,330	-		Psyr_2669	0.90	+0.8
3,241,330	-		Psyr_2669	0.90	-1.6
3,241,338	+				-0.4
3,241,338	+				-0.2
3,241,338	+				+0.8
3,241,339	-				+1.2
3,241,339	-				-1.4
3,241,339	-				+0.8
3,241,339	-				-1.4
3,241,339	-				+0.3
3,241,379	+				+0.3
3,241,379	+				-0.9
3,241,379	+				-0.6
3,241,545	+		Psyr_2670	0.15	-1.2
3,241,545	+		Psyr_2670	0.15	-0.7
3,241,545	+		Psyr_2670	0.15	+1.3
3,241,546	-		Psyr_2670	0.16	-2.2
3,241,546	-		Psyr_2670	0.16	+0.3
3,241,546	-				-0.2
3,241,546	-		Psyr_2670	0.16	-1.4
3,241,546	-		Psyr_2670	0.16	+1.8
3,241,547	+		Psyr_2670	0.16	-0.6
3,241,547	+		Psyr_2670	0.16	-1.0
3,241,548	-		Psyr_2670	0.16	-0.2
3,241,548	-		Psyr_2670	0.16	-1.9
3,241,548	-		Psyr_2670	0.16	-0.4
3,241,548	-		Psyr_2670	0.16	+0.5
3,241,583	-		Psyr_2670	0.20	+0.2
3,241,589	+		Psyr_2670	0.21	+1.0
3,241,590	-		Psyr_2670	0.21	-1.0
3,241,654	+		Psyr_2670	0.29	-1.4
3,241,744	+		Psyr_2670	0.39	-0.8
3,241,744	+		Psyr_2670	0.39	-1.6
3,241,856	-		Psyr_2670	0.53	-2.3
3,241,856	-		Psyr_2670	0.53	-1.0
3,241,856	-		Psyr_2670	0.53	+1.0
3,241,872	+		Psyr_2670	0.55	+0.8
3,241,875	-		Psyr_2670	0.55	-0.9
3,241,875	-		Psyr_2670	0.55	-0.4
3,241,916	+		Psyr_2670	0.60	+1.3
3,241,973	+		Psyr_2670	0.67	-0.4
3,241,973	+		Psyr_2670	0.67	-1.6
3,241,973	+		Psyr_2670	0.67	-1.5
3,241,974	-		Psyr_2670	0.67	-2.1
3,242,019	+		Psyr_2670	0.72	+0.3
3,242,019	+		Psyr_2670	0.72	+0.1
3,242,019	+		Psyr_2670	0.72	-1.8
3,242,027	-		Psyr_2670	0.73	-1.2
3,242,201	+				-1.8
3,242,201	+				+0.2
3,242,201	+				+0.8
3,242,201	+				-1.6
3,242,201	+				-1.6
3,242,201	+				-2.4
3,242,201	+				-1.2
3,242,201	+				-0.9
3,242,201	+				-0.6
3,242,202	-				-1.4
3,242,202	-				-1.2
3,242,202	-				-0.8
3,242,202	-				-1.7
3,242,202	-				+0.2
3,242,202	-				-0.1
3,242,202	-				-1.7
3,242,243	-				+0.2
3,242,243	-				-1.2
3,242,245	+				-0.8
3,242,245	+				-1.0
3,242,245	+				-0.2
3,242,245	+				-1.6
3,242,245	+				+1.8
3,242,245	+				+0.2
3,242,245	+				-2.2
3,242,245	+				-0.8
3,242,246	-				+0.2
3,242,246	-				-0.8
3,242,246	-				-0.2
3,242,246	-				+0.2
3,242,246	-				-2.2
3,242,246	-				-1.1
3,242,246	-				+0.4
3,242,246	-				+0.2
3,242,246	-				-1.0
3,242,246	-				-0.7
3,242,246	-				+1.2
3,242,246	-				-0.0
3,242,250	-				-0.7
3,242,267	-				+1.8
3,242,373	-				+1.0
3,242,375	+				-2.0
3,242,376	-				+0.4
3,242,465	+		Psyr_2671	0.19	-0.6
3,242,509	+		Psyr_2671	0.23	+0.5
3,242,509	+		Psyr_2671	0.23	+0.7
3,242,509	+		Psyr_2671	0.23	-0.2
3,242,509	+		Psyr_2671	0.23	+0.3
3,242,509	+		Psyr_2671	0.23	+0.8
3,242,509	+		Psyr_2671	0.23	+0.3
3,242,509	+		Psyr_2671	0.23	-0.2
3,242,510	-		Psyr_2671	0.23	+0.2
3,242,510	-		Psyr_2671	0.23	+0.8
3,242,510	-		Psyr_2671	0.23	+1.0
3,242,510	-		Psyr_2671	0.23	-0.1
3,242,510	-		Psyr_2671	0.23	-0.4
3,242,510	-		Psyr_2671	0.23	+0.8
3,242,510	-		Psyr_2671	0.23	+0.1
3,242,510	-		Psyr_2671	0.23	-1.9
3,242,510	-		Psyr_2671	0.23	-0.4
3,242,532	+		Psyr_2671	0.26	-0.8
3,242,533	-		Psyr_2671	0.26	-0.2
3,242,597	+		Psyr_2671	0.33	-0.5
3,242,619	+		Psyr_2671	0.35	-0.7
3,242,620	-		Psyr_2671	0.35	+1.8
3,242,620	-		Psyr_2671	0.35	-1.0
3,242,620	-		Psyr_2671	0.35	+0.5
3,242,620	-		Psyr_2671	0.35	+1.8
3,242,620	-		Psyr_2671	0.35	+0.2
3,242,620	-		Psyr_2671	0.35	+0.3
3,242,737	-		Psyr_2671	0.48	-0.7
3,242,737	-		Psyr_2671	0.48	-0.0
3,242,855	+		Psyr_2671	0.60	-2.2
3,242,855	+		Psyr_2671	0.60	-1.0
3,242,862	+		Psyr_2671	0.61	-0.2
3,243,102	+		Psyr_2671	0.86	-0.9
3,243,102	+		Psyr_2671	0.86	-1.6
3,243,102	+		Psyr_2671	0.86	-2.5
3,243,103	-		Psyr_2671	0.86	+0.8
3,243,211	+				-1.4
3,243,212	-				-0.2
3,243,243	-				-0.7
3,243,243	-				-1.7
3,243,243	-				+0.2
3,243,245	+				-0.6
3,243,245	+				-0.7
3,243,245	+				-1.0
3,243,246	-				+0.8
3,243,246	-				+0.4