Experiment: KB with Nalidixic 12.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2664 and Psyr_2665 are separated by 405 nucleotides Psyr_2665 and Psyr_2666 are separated by 178 nucleotides Psyr_2666 and Psyr_2667 are separated by 163 nucleotides
Psyr_2664: Psyr_2664 - hypothetical protein, at 3,234,416 to 3,235,135
_2664
Psyr_2665: Psyr_2665 - Phenazine biosynthesis PhzC/PhzF protein, at 3,235,541 to 3,236,047
_2665
Psyr_2666: Psyr_2666 - NUDIX hydrolase, at 3,236,226 to 3,236,753
_2666
Psyr_2667: Psyr_2667 - Transposase Tn3, at 3,236,917 to 3,239,802
_2667
Position (kb) 3235
3236
3237 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 3234.564 kb on + strand, within Psyr_2664 at 3234.564 kb on + strand, within Psyr_2664 at 3234.564 kb on + strand, within Psyr_2664 at 3234.564 kb on + strand at 3234.565 kb on - strand, within Psyr_2664 at 3234.565 kb on - strand, within Psyr_2664 at 3234.565 kb on - strand, within Psyr_2664 at 3234.565 kb on - strand, within Psyr_2664 at 3234.565 kb on - strand, within Psyr_2664 at 3234.587 kb on - strand, within Psyr_2664 at 3234.621 kb on + strand, within Psyr_2664 at 3234.672 kb on + strand, within Psyr_2664 at 3234.672 kb on + strand, within Psyr_2664 at 3234.672 kb on + strand, within Psyr_2664 at 3234.673 kb on - strand, within Psyr_2664 at 3234.691 kb on + strand, within Psyr_2664 at 3234.691 kb on + strand, within Psyr_2664 at 3234.691 kb on + strand, within Psyr_2664 at 3234.691 kb on + strand, within Psyr_2664 at 3234.692 kb on - strand, within Psyr_2664 at 3234.692 kb on - strand, within Psyr_2664 at 3234.712 kb on + strand, within Psyr_2664 at 3234.712 kb on + strand, within Psyr_2664 at 3234.713 kb on - strand, within Psyr_2664 at 3234.824 kb on - strand, within Psyr_2664 at 3234.872 kb on + strand, within Psyr_2664 at 3234.873 kb on - strand, within Psyr_2664 at 3234.873 kb on - strand, within Psyr_2664 at 3234.873 kb on - strand, within Psyr_2664 at 3234.873 kb on - strand, within Psyr_2664 at 3234.873 kb on - strand, within Psyr_2664 at 3234.873 kb on - strand, within Psyr_2664 at 3234.874 kb on + strand, within Psyr_2664 at 3234.875 kb on - strand, within Psyr_2664 at 3234.905 kb on - strand, within Psyr_2664 at 3234.953 kb on + strand, within Psyr_2664 at 3234.954 kb on - strand, within Psyr_2664 at 3235.013 kb on + strand, within Psyr_2664 at 3235.014 kb on - strand, within Psyr_2664 at 3235.097 kb on + strand at 3235.098 kb on - strand at 3235.098 kb on - strand at 3235.098 kb on - strand at 3235.098 kb on - strand at 3235.099 kb on + strand at 3235.099 kb on + strand at 3235.099 kb on + strand at 3235.099 kb on + strand at 3235.099 kb on + strand at 3235.099 kb on + strand at 3235.099 kb on + strand at 3235.099 kb on + strand at 3235.099 kb on + strand at 3235.099 kb on + strand at 3235.099 kb on + strand at 3235.099 kb on + strand at 3235.099 kb on + strand at 3235.100 kb on - strand at 3235.100 kb on - strand at 3235.100 kb on - strand at 3235.100 kb on - strand at 3235.100 kb on - strand at 3235.100 kb on - strand at 3235.100 kb on - strand at 3235.103 kb on + strand at 3235.103 kb on + strand at 3235.103 kb on + strand at 3235.103 kb on + strand at 3235.103 kb on + strand at 3235.103 kb on + strand at 3235.103 kb on + strand at 3235.104 kb on - strand at 3235.104 kb on - strand at 3235.104 kb on - strand at 3235.106 kb on + strand at 3235.130 kb on - strand at 3235.181 kb on + strand at 3235.269 kb on + strand at 3235.269 kb on + strand at 3235.273 kb on + strand at 3235.273 kb on + strand at 3235.274 kb on - strand at 3235.274 kb on - strand at 3235.295 kb on + strand at 3235.296 kb on - strand at 3235.296 kb on - strand at 3235.296 kb on - strand at 3235.357 kb on - strand at 3235.368 kb on + strand at 3235.369 kb on - strand at 3235.369 kb on - strand at 3235.369 kb on - strand at 3235.480 kb on + strand at 3235.480 kb on + strand at 3235.481 kb on - strand at 3235.544 kb on + strand at 3235.544 kb on + strand at 3235.544 kb on + strand at 3235.544 kb on + strand at 3235.544 kb on + strand at 3235.545 kb on - strand at 3235.545 kb on - strand at 3235.545 kb on - strand at 3235.545 kb on - strand at 3235.578 kb on - strand at 3235.578 kb on - strand at 3235.588 kb on + strand at 3235.588 kb on + strand at 3235.588 kb on + strand at 3235.598 kb on - strand, within Psyr_2665 at 3235.598 kb on - strand, within Psyr_2665 at 3235.598 kb on - strand, within Psyr_2665 at 3235.598 kb on - strand, within Psyr_2665 at 3235.623 kb on + strand, within Psyr_2665 at 3235.624 kb on - strand, within Psyr_2665 at 3235.624 kb on - strand, within Psyr_2665 at 3235.624 kb on - strand, within Psyr_2665 at 3235.735 kb on + strand, within Psyr_2665 at 3235.735 kb on + strand, within Psyr_2665 at 3235.736 kb on - strand, within Psyr_2665 at 3235.754 kb on - strand, within Psyr_2665 at 3235.770 kb on + strand, within Psyr_2665 at 3235.770 kb on + strand, within Psyr_2665 at 3235.770 kb on + strand, within Psyr_2665 at 3235.770 kb on + strand, within Psyr_2665 at 3235.771 kb on - strand, within Psyr_2665 at 3235.797 kb on + strand, within Psyr_2665 at 3235.798 kb on - strand, within Psyr_2665 at 3235.822 kb on + strand, within Psyr_2665 at 3235.899 kb on + strand, within Psyr_2665 at 3235.925 kb on + strand, within Psyr_2665 at 3235.925 kb on + strand, within Psyr_2665 at 3235.925 kb on + strand, within Psyr_2665 at 3235.928 kb on - strand, within Psyr_2665 at 3235.928 kb on - strand, within Psyr_2665 at 3235.928 kb on - strand, within Psyr_2665 at 3235.942 kb on + strand, within Psyr_2665 at 3236.123 kb on + strand at 3236.123 kb on + strand at 3236.141 kb on + strand at 3236.163 kb on - strand at 3236.268 kb on - strand at 3236.268 kb on - strand at 3236.318 kb on + strand, within Psyr_2666 at 3236.319 kb on - strand, within Psyr_2666 at 3236.330 kb on + strand, within Psyr_2666 at 3236.382 kb on + strand, within Psyr_2666 at 3236.382 kb on + strand, within Psyr_2666 at 3236.382 kb on + strand, within Psyr_2666 at 3236.437 kb on + strand, within Psyr_2666 at 3236.438 kb on - strand, within Psyr_2666 at 3236.438 kb on - strand, within Psyr_2666 at 3236.438 kb on - strand, within Psyr_2666 at 3236.438 kb on - strand, within Psyr_2666 at 3236.467 kb on + strand, within Psyr_2666 at 3236.503 kb on + strand, within Psyr_2666 at 3236.503 kb on + strand, within Psyr_2666 at 3236.504 kb on - strand, within Psyr_2666 at 3236.510 kb on - strand, within Psyr_2666 at 3236.510 kb on - strand, within Psyr_2666 at 3236.510 kb on - strand, within Psyr_2666 at 3236.573 kb on + strand, within Psyr_2666 at 3236.624 kb on + strand, within Psyr_2666 at 3236.626 kb on + strand, within Psyr_2666 at 3236.626 kb on + strand, within Psyr_2666 at 3236.636 kb on + strand, within Psyr_2666 at 3236.643 kb on + strand, within Psyr_2666 at 3236.644 kb on - strand, within Psyr_2666 at 3236.667 kb on + strand, within Psyr_2666 at 3236.668 kb on - strand, within Psyr_2666 at 3236.668 kb on - strand, within Psyr_2666 at 3236.697 kb on + strand, within Psyr_2666 at 3236.796 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nalidixic 12.5 ug/ml remove 3,234,564 + Psyr_2664 0.21 +0.4 3,234,564 + Psyr_2664 0.21 +0.2 3,234,564 + Psyr_2664 0.21 +0.2 3,234,564 + +1.2 3,234,565 - Psyr_2664 0.21 -1.7 3,234,565 - Psyr_2664 0.21 +0.3 3,234,565 - Psyr_2664 0.21 +1.8 3,234,565 - Psyr_2664 0.21 -0.8 3,234,565 - Psyr_2664 0.21 -1.0 3,234,587 - Psyr_2664 0.24 -2.2 3,234,621 + Psyr_2664 0.28 -1.0 3,234,672 + Psyr_2664 0.36 -1.4 3,234,672 + Psyr_2664 0.36 -1.2 3,234,672 + Psyr_2664 0.36 -1.0 3,234,673 - Psyr_2664 0.36 +0.8 3,234,691 + Psyr_2664 0.38 -0.6 3,234,691 + Psyr_2664 0.38 -1.7 3,234,691 + Psyr_2664 0.38 +0.3 3,234,691 + Psyr_2664 0.38 +0.2 3,234,692 - Psyr_2664 0.38 -0.6 3,234,692 - Psyr_2664 0.38 -1.0 3,234,712 + Psyr_2664 0.41 +0.4 3,234,712 + Psyr_2664 0.41 -2.0 3,234,713 - Psyr_2664 0.41 -1.4 3,234,824 - Psyr_2664 0.57 +1.0 3,234,872 + Psyr_2664 0.63 -0.2 3,234,873 - Psyr_2664 0.63 -0.2 3,234,873 - Psyr_2664 0.63 -1.2 3,234,873 - Psyr_2664 0.63 -0.7 3,234,873 - Psyr_2664 0.63 -0.8 3,234,873 - Psyr_2664 0.63 +0.8 3,234,873 - Psyr_2664 0.63 -0.2 3,234,874 + Psyr_2664 0.64 -1.2 3,234,875 - Psyr_2664 0.64 -2.5 3,234,905 - Psyr_2664 0.68 -0.2 3,234,953 + Psyr_2664 0.75 -1.4 3,234,954 - Psyr_2664 0.75 -0.6 3,235,013 + Psyr_2664 0.83 -1.2 3,235,014 - Psyr_2664 0.83 +1.8 3,235,097 + -0.0 3,235,098 - -1.6 3,235,098 - -1.4 3,235,098 - +0.8 3,235,098 - +0.2 3,235,099 + -2.6 3,235,099 + -1.0 3,235,099 + -1.7 3,235,099 + -2.2 3,235,099 + -0.2 3,235,099 + -0.8 3,235,099 + +0.2 3,235,099 + -0.8 3,235,099 + +0.5 3,235,099 + -1.4 3,235,099 + +0.2 3,235,099 + -1.3 3,235,099 + -0.6 3,235,100 - +1.8 3,235,100 - +0.8 3,235,100 - -0.2 3,235,100 - -0.7 3,235,100 - -0.6 3,235,100 - -1.8 3,235,100 - -1.0 3,235,103 + -1.0 3,235,103 + -0.6 3,235,103 + +0.2 3,235,103 + +1.8 3,235,103 + +0.2 3,235,103 + +0.2 3,235,103 + -0.2 3,235,104 - -1.8 3,235,104 - -1.4 3,235,104 - -1.7 3,235,106 + +0.2 3,235,130 - -1.6 3,235,181 + -2.4 3,235,269 + +0.4 3,235,269 + -0.8 3,235,273 + -2.2 3,235,273 + -2.8 3,235,274 - -1.6 3,235,274 - -0.8 3,235,295 + -0.8 3,235,296 - -1.8 3,235,296 - +0.2 3,235,296 - -0.2 3,235,357 - -0.8 3,235,368 + -0.4 3,235,369 - -1.6 3,235,369 - -0.6 3,235,369 - -1.6 3,235,480 + -1.1 3,235,480 + +1.3 3,235,481 - -2.2 3,235,544 + -1.6 3,235,544 + +1.3 3,235,544 + +1.8 3,235,544 + -0.9 3,235,544 + +0.8 3,235,545 - -1.2 3,235,545 - -1.4 3,235,545 - -0.1 3,235,545 - -2.4 3,235,578 - +0.8 3,235,578 - -0.2 3,235,588 + +0.5 3,235,588 + -0.4 3,235,588 + -1.7 3,235,598 - Psyr_2665 0.11 -1.7 3,235,598 - Psyr_2665 0.11 -0.6 3,235,598 - Psyr_2665 0.11 -0.8 3,235,598 - Psyr_2665 0.11 -0.8 3,235,623 + Psyr_2665 0.16 +1.2 3,235,624 - Psyr_2665 0.16 -2.3 3,235,624 - Psyr_2665 0.16 -0.6 3,235,624 - Psyr_2665 0.16 -1.8 3,235,735 + Psyr_2665 0.38 +1.4 3,235,735 + Psyr_2665 0.38 -1.2 3,235,736 - Psyr_2665 0.38 +0.8 3,235,754 - Psyr_2665 0.42 -0.3 3,235,770 + Psyr_2665 0.45 +2.2 3,235,770 + Psyr_2665 0.45 +0.8 3,235,770 + Psyr_2665 0.45 -1.2 3,235,770 + Psyr_2665 0.45 +1.0 3,235,771 - Psyr_2665 0.45 +0.2 3,235,797 + Psyr_2665 0.50 +1.6 3,235,798 - Psyr_2665 0.51 +1.4 3,235,822 + Psyr_2665 0.55 +1.5 3,235,899 + Psyr_2665 0.71 +0.2 3,235,925 + Psyr_2665 0.76 +0.8 3,235,925 + Psyr_2665 0.76 +0.6 3,235,925 + Psyr_2665 0.76 +2.0 3,235,928 - Psyr_2665 0.76 +0.2 3,235,928 - Psyr_2665 0.76 -0.6 3,235,928 - Psyr_2665 0.76 +0.2 3,235,942 + Psyr_2665 0.79 -1.7 3,236,123 + +0.2 3,236,123 + +1.8 3,236,141 + +2.3 3,236,163 - -1.8 3,236,268 - -0.0 3,236,268 - +0.8 3,236,318 + Psyr_2666 0.17 -1.6 3,236,319 - Psyr_2666 0.18 +0.2 3,236,330 + Psyr_2666 0.20 -1.1 3,236,382 + Psyr_2666 0.30 -0.6 3,236,382 + Psyr_2666 0.30 +0.4 3,236,382 + Psyr_2666 0.30 -1.2 3,236,437 + Psyr_2666 0.40 +0.0 3,236,438 - Psyr_2666 0.40 +1.8 3,236,438 - Psyr_2666 0.40 -0.1 3,236,438 - Psyr_2666 0.40 -0.9 3,236,438 - Psyr_2666 0.40 -0.5 3,236,467 + Psyr_2666 0.46 -0.6 3,236,503 + Psyr_2666 0.52 +0.8 3,236,503 + Psyr_2666 0.52 -1.2 3,236,504 - Psyr_2666 0.53 -0.1 3,236,510 - Psyr_2666 0.54 +0.5 3,236,510 - Psyr_2666 0.54 -0.7 3,236,510 - Psyr_2666 0.54 -0.6 3,236,573 + Psyr_2666 0.66 -1.5 3,236,624 + Psyr_2666 0.75 +0.4 3,236,626 + Psyr_2666 0.76 -1.8 3,236,626 + Psyr_2666 0.76 +2.8 3,236,636 + Psyr_2666 0.78 +0.5 3,236,643 + Psyr_2666 0.79 +0.8 3,236,644 - Psyr_2666 0.79 -1.2 3,236,667 + Psyr_2666 0.84 -0.0 3,236,668 - Psyr_2666 0.84 -2.1 3,236,668 - Psyr_2666 0.84 +0.3 3,236,697 + Psyr_2666 0.89 -0.8 3,236,796 - -1.4
Or see this region's nucleotide sequence