Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2640

Experiment: KB with Nalidixic 12.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Nalidixic 12.5 ug/ml
3,206,961	+		Psyr_2639	0.56	-0.0
3,206,962	-		Psyr_2639	0.56	-2.5
3,206,962	-		Psyr_2639	0.56	-0.4
3,206,962	-		Psyr_2639	0.56	+0.2
3,206,981	+		Psyr_2639	0.60	+0.8
3,207,065	+		Psyr_2639	0.78	+0.8
3,207,065	+		Psyr_2639	0.78	+0.2
3,207,065	+		Psyr_2639	0.78	+2.8
3,207,065	+		Psyr_2639	0.78	+0.2
3,207,065	+		Psyr_2639	0.78	-0.3
3,207,066	-		Psyr_2639	0.78	-0.2
3,207,066	-		Psyr_2639	0.78	-1.5
3,207,066	-		Psyr_2639	0.78	-1.4
3,207,066	-		Psyr_2639	0.78	-2.2
3,207,066	-		Psyr_2639	0.78	+1.5
3,207,066	-		Psyr_2639	0.78	+0.8
3,207,066	-		Psyr_2639	0.78	-0.3
3,207,066	-		Psyr_2639	0.78	-1.0
3,207,066	-		Psyr_2639	0.78	-1.2
3,207,066	-		Psyr_2639	0.78	-1.8
3,207,066	-		Psyr_2639	0.78	-1.2
3,207,066	-		Psyr_2639	0.78	+0.8
3,207,066	-		Psyr_2639	0.78	+0.8
3,207,082	+		Psyr_2639	0.82	-2.5
3,207,083	-		Psyr_2639	0.82	+0.2
3,207,162	-				-1.9
3,207,162	-				-1.5
3,207,230	-				-0.8
3,207,236	-				+0.2
3,207,288	-				-0.5
3,207,330	+				+0.2
3,207,330	+				-0.2
3,207,330	+				-0.2
3,207,331	-				+1.8
3,207,331	-				-0.2
3,207,410	+				+1.0
3,207,410	+				-2.2
3,207,453	+				-0.3
3,207,483	-				-0.3
3,207,483	-				-1.2
3,207,483	-				+0.8
3,207,495	+				-0.2
3,207,551	+				-0.7
3,207,630	+				-1.4
3,207,653	+				-0.2
3,207,654	-				+0.2
3,207,654	-				-0.5
3,207,654	-				+1.8
3,207,654	-				-0.2
3,207,660	+				-0.8
3,207,706	+				-0.2
3,207,707	-				-0.2
3,207,738	+				-0.2
3,207,757	+				-2.2
3,207,758	-				-1.5
3,207,758	-				+1.2
3,207,782	-				-0.7
3,207,782	-				-0.2
3,207,798	+				+0.0
3,207,888	+				-0.5
3,207,889	-				-1.5
3,207,903	+				+0.6
3,207,956	+				+0.4
3,207,956	+				-0.2
3,207,956	+				+3.4
3,207,957	-				-0.5
3,208,164	+		Psyr_2640	0.50	+0.6
3,208,165	-		Psyr_2640	0.50	-0.5
3,208,165	-		Psyr_2640	0.50	-1.7
3,208,165	-		Psyr_2640	0.50	+0.9
3,208,167	-		Psyr_2640	0.51	-0.7
3,208,175	-		Psyr_2640	0.53	+0.7
3,208,175	-		Psyr_2640	0.53	+0.8
3,208,175	-		Psyr_2640	0.53	+0.4
3,208,178	+		Psyr_2640	0.53	+0.2
3,208,178	+		Psyr_2640	0.53	-2.1
3,208,178	+		Psyr_2640	0.53	-0.9
3,208,178	+		Psyr_2640	0.53	+0.8
3,208,179	-		Psyr_2640	0.53	+0.2
3,208,179	-		Psyr_2640	0.53	-0.9
3,208,179	-		Psyr_2640	0.53	-0.0
3,208,203	-		Psyr_2640	0.59	-1.0
3,208,203	-		Psyr_2640	0.59	-0.5
3,208,211	-		Psyr_2640	0.61	-2.8
3,208,240	+		Psyr_2640	0.67	+0.6
3,208,349	+				-1.1
3,208,349	+				+0.8
3,208,349	+				+0.2
3,208,349	+				-0.2
3,208,350	-				-0.5
3,208,350	-				-2.2
3,208,350	-				-0.4
3,208,350	-				-0.5
3,208,350	-				-0.2
3,208,352	-				-0.4
3,208,352	-				+0.2
3,208,358	+				+0.5
3,208,359	-				+3.1
3,208,393	-				+1.5
3,208,491	+				+1.0
3,208,491	+				+0.8
3,208,491	+				-1.8
3,208,491	+				+0.8
3,208,492	-				+0.5
3,208,625	+				+0.5
3,208,626	-				-0.0
3,208,626	-				-0.8
3,208,626	-				-1.9
3,208,626	-				-0.5
3,208,626	-				-1.2
3,208,662	-				-0.5
3,208,741	+				+0.2
3,208,742	-				-0.2
3,208,742	-				+0.2
3,208,766	+				-1.0
3,208,767	-				+0.8
3,208,864	-				+0.8
3,208,913	+				+0.2
3,208,913	+				-0.2
3,208,913	+				-2.1
3,208,917	+				-1.0
3,208,918	-				-0.0
3,208,922	+				+0.4
3,208,922	+				-2.1
3,208,923	-				+0.8
3,208,948	+				+0.8
3,208,972	-				-0.3
3,208,984	+				-0.2
3,209,139	+		Psyr_2641	0.29	-1.0
3,209,140	-		Psyr_2641	0.29	-0.6
3,209,140	-		Psyr_2641	0.29	-1.0
3,209,161	+		Psyr_2641	0.34	-1.8
3,209,161	+		Psyr_2641	0.34	+0.2
3,209,162	-		Psyr_2641	0.35	-0.2
3,209,300	+		Psyr_2641	0.68	+1.8
3,209,301	-				+2.8
3,209,304	+		Psyr_2641	0.69	-1.8
3,209,305	-		Psyr_2641	0.70	-0.8
3,209,358	-		Psyr_2641	0.83	-2.1