Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2629

Experiment: KB with Nalidixic 12.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Nalidixic 12.5 ug/ml
3,188,123	+		Psyr_2627	0.82	-0.5
3,188,123	+		Psyr_2627	0.82	-0.4
3,188,123	+		Psyr_2627	0.82	-1.2
3,188,428	+		Psyr_2628	0.14	+0.2
3,188,429	-		Psyr_2628	0.14	+1.8
3,188,491	+		Psyr_2628	0.23	-1.2
3,188,513	-		Psyr_2628	0.26	+1.8
3,188,513	-		Psyr_2628	0.26	+0.1
3,188,771	+		Psyr_2628	0.64	-1.2
3,188,771	+		Psyr_2628	0.64	-0.2
3,188,771	+		Psyr_2628	0.64	-1.4
3,188,771	+		Psyr_2628	0.64	-0.5
3,188,772	-		Psyr_2628	0.64	-1.5
3,188,772	-		Psyr_2628	0.64	+0.2
3,188,772	-		Psyr_2628	0.64	+1.5
3,189,115	+				+2.3
3,189,115	+				+1.2
3,189,115	+				+1.2
3,189,115	+				-0.5
3,189,115	+				-1.5
3,189,115	+				+0.1
3,189,115	+				+0.6
3,189,116	-				+0.2
3,189,116	-				+0.2
3,189,116	-				+0.8
3,189,116	-				-1.4
3,189,116	-				-0.7
3,189,116	-				+0.4
3,189,116	-				-0.5
3,189,227	-		Psyr_2629	0.10	+0.8
3,189,244	+		Psyr_2629	0.11	+1.2
3,189,653	-		Psyr_2629	0.32	-0.8
3,189,743	-		Psyr_2629	0.36	-0.5
3,189,743	-		Psyr_2629	0.36	-1.0
3,189,766	+		Psyr_2629	0.37	-0.4
3,189,766	+		Psyr_2629	0.37	-0.5
3,189,766	+		Psyr_2629	0.37	+0.3
3,189,766	+		Psyr_2629	0.37	+1.8
3,189,845	-		Psyr_2629	0.41	-1.5
3,189,845	-		Psyr_2629	0.41	-0.5
3,189,879	+		Psyr_2629	0.43	-0.5
3,189,958	+		Psyr_2629	0.47	-0.8
3,189,959	-		Psyr_2629	0.47	-1.4
3,190,016	-		Psyr_2629	0.50	-1.4
3,190,098	+		Psyr_2629	0.54	-0.2
3,190,099	-		Psyr_2629	0.54	+0.2
3,190,099	-		Psyr_2629	0.54	-1.4
3,190,117	+		Psyr_2629	0.55	-0.2
3,190,117	+		Psyr_2629	0.55	-1.2
3,190,117	+		Psyr_2629	0.55	+0.8
3,190,117	+		Psyr_2629	0.55	-0.8
3,190,118	-		Psyr_2629	0.55	-1.0
3,190,118	-		Psyr_2629	0.55	-0.4
3,190,118	-		Psyr_2629	0.55	+1.6
3,190,118	-		Psyr_2629	0.55	+0.6
3,190,132	+		Psyr_2629	0.56	+0.8
3,190,132	+		Psyr_2629	0.56	-2.7
3,190,132	+		Psyr_2629	0.56	-0.8
3,190,133	-		Psyr_2629	0.56	+0.5
3,190,133	-		Psyr_2629	0.56	+0.8
3,190,226	-		Psyr_2629	0.60	+0.5
3,190,227	+		Psyr_2629	0.60	+0.2
3,190,228	-		Psyr_2629	0.60	-1.0
3,190,261	+		Psyr_2629	0.62	+1.2
3,190,261	+		Psyr_2629	0.62	-0.3
3,190,277	+		Psyr_2629	0.63	-1.0
3,190,415	+		Psyr_2629	0.70	-0.3
3,190,415	+		Psyr_2629	0.70	-0.2
3,190,419	+		Psyr_2629	0.70	-1.5
3,190,499	-		Psyr_2629	0.74	-0.2
3,190,525	+		Psyr_2629	0.75	-0.3
3,190,526	-		Psyr_2629	0.75	-2.2
3,190,526	-		Psyr_2629	0.75	+0.8
3,190,526	-		Psyr_2629	0.75	-0.8
3,190,811	-		Psyr_2629	0.90	-0.2
3,190,816	+				+1.1
3,190,817	-				-2.0
3,190,817	-				-0.5
3,190,826	+				-2.7
3,190,984	-				-1.0
3,190,984	-				-1.2
3,190,984	-				-0.5
3,191,139	+		Psyr_2630	0.12	-1.5
3,191,139	+		Psyr_2630	0.12	+1.0
3,191,139	+		Psyr_2630	0.12	+0.2
3,191,139	+		Psyr_2630	0.12	-0.1
3,191,139	+		Psyr_2630	0.12	-1.2
3,191,140	-		Psyr_2630	0.12	-1.0
3,191,140	-		Psyr_2630	0.12	-0.0
3,191,143	+		Psyr_2630	0.13	-0.2
3,191,144	-		Psyr_2630	0.13	+0.7
3,191,152	-		Psyr_2630	0.14	+0.2
3,191,164	-		Psyr_2630	0.15	+0.8
3,191,334	-		Psyr_2630	0.31	+0.3
3,191,342	+		Psyr_2630	0.32	-0.2
3,191,495	+		Psyr_2630	0.47	-0.5
3,191,495	+		Psyr_2630	0.47	+1.8
3,191,496	-		Psyr_2630	0.47	+0.2
3,191,671	+		Psyr_2630	0.64	+0.5
3,191,910	+		Psyr_2630	0.87	-1.9
3,191,910	+		Psyr_2630	0.87	+0.8
3,191,913	+		Psyr_2630	0.88	+2.8
3,191,913	+		Psyr_2630	0.88	-1.7
3,191,914	-		Psyr_2630	0.88	+1.8
3,191,975	+				-0.1
3,191,976	-				-0.8
3,191,976	-				-0.1
3,191,976	-				+1.8