Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2538

Experiment: KB with Nalidixic 12.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2537 and Psyr_2538 overlap by 4 nucleotidesPsyr_2538 and Psyr_2539 overlap by 4 nucleotidesPsyr_2539 and Psyr_2540 overlap by 4 nucleotides Psyr_2537: Psyr_2537 - conserved hypothetical protein, at 2,951,996 to 2,953,456 _2537 Psyr_2538: Psyr_2538 - Binding-protein-dependent transport systems inner membrane component, at 2,953,453 to 2,954,427 _2538 Psyr_2539: Psyr_2539 - Binding-protein-dependent transport systems inner membrane component, at 2,954,424 to 2,955,344 _2539 Psyr_2540: Psyr_2540 - Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal, at 2,955,341 to 2,956,354 _2540 Position (kb) 2953 2954 2955Strain fitness (log2 ratio) -1 0 1 2 3at 2952.454 kb on + strand, within Psyr_2537at 2952.455 kb on - strand, within Psyr_2537at 2952.866 kb on + strand, within Psyr_2537at 2953.001 kb on - strand, within Psyr_2537at 2953.265 kb on + strand, within Psyr_2537at 2953.813 kb on - strand, within Psyr_2538at 2953.816 kb on + strand, within Psyr_2538at 2953.817 kb on - strand, within Psyr_2538at 2954.383 kb on + strandat 2954.383 kb on + strandat 2954.383 kb on + strandat 2954.383 kb on + strandat 2954.383 kb on + strandat 2954.383 kb on + strandat 2954.384 kb on - strandat 2954.385 kb on - strandat 2954.387 kb on - strandat 2954.387 kb on - strandat 2954.406 kb on - strandat 2954.668 kb on - strand, within Psyr_2539at 2954.673 kb on + strand, within Psyr_2539at 2954.673 kb on + strand, within Psyr_2539at 2954.674 kb on - strand, within Psyr_2539at 2954.674 kb on - strand, within Psyr_2539at 2954.721 kb on - strand, within Psyr_2539at 2954.721 kb on - strand, within Psyr_2539at 2954.724 kb on + strand, within Psyr_2539at 2954.725 kb on - strand, within Psyr_2539at 2954.725 kb on - strand, within Psyr_2539at 2954.725 kb on - strand, within Psyr_2539at 2954.812 kb on - strand, within Psyr_2539at 2954.815 kb on + strand, within Psyr_2539at 2954.816 kb on - strand, within Psyr_2539at 2954.961 kb on + strand, within Psyr_2539at 2954.962 kb on - strand, within Psyr_2539at 2954.962 kb on - strand, within Psyr_2539at 2955.012 kb on + strand, within Psyr_2539at 2955.012 kb on + strand, within Psyr_2539at 2955.219 kb on + strand, within Psyr_2539at 2955.219 kb on + strand, within Psyr_2539at 2955.219 kb on + strand, within Psyr_2539at 2955.219 kb on + strand, within Psyr_2539at 2955.219 kb on + strand, within Psyr_2539at 2955.220 kb on - strand, within Psyr_2539at 2955.220 kb on - strand, within Psyr_2539at 2955.220 kb on - strand, within Psyr_2539at 2955.237 kb on + strand, within Psyr_2539at 2955.366 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nalidixic 12.5 ug/ml
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2,952,454 + Psyr_2537 0.31 +1.6
2,952,455 - Psyr_2537 0.31 +0.9
2,952,866 + Psyr_2537 0.60 +0.0
2,953,001 - Psyr_2537 0.69 -0.7
2,953,265 + Psyr_2537 0.87 +1.0
2,953,813 - Psyr_2538 0.37 +1.8
2,953,816 + Psyr_2538 0.37 +1.3
2,953,817 - Psyr_2538 0.37 +0.8
2,954,383 + -0.2
2,954,383 + +1.0
2,954,383 + +1.4
2,954,383 + -0.2
2,954,383 + +0.2
2,954,383 + -1.6
2,954,384 - +3.3
2,954,385 - -1.2
2,954,387 - +0.2
2,954,387 - -0.8
2,954,406 - +1.8
2,954,668 - Psyr_2539 0.26 +0.3
2,954,673 + Psyr_2539 0.27 +0.5
2,954,673 + Psyr_2539 0.27 +0.5
2,954,674 - Psyr_2539 0.27 +0.3
2,954,674 - Psyr_2539 0.27 -0.8
2,954,721 - Psyr_2539 0.32 +0.3
2,954,721 - Psyr_2539 0.32 -0.7
2,954,724 + Psyr_2539 0.33 +2.3
2,954,725 - Psyr_2539 0.33 -0.0
2,954,725 - Psyr_2539 0.33 -0.6
2,954,725 - Psyr_2539 0.33 +0.8
2,954,812 - Psyr_2539 0.42 +1.8
2,954,815 + Psyr_2539 0.42 +1.3
2,954,816 - Psyr_2539 0.43 -0.1
2,954,961 + Psyr_2539 0.58 +0.4
2,954,962 - Psyr_2539 0.58 +0.2
2,954,962 - Psyr_2539 0.58 -0.7
2,955,012 + Psyr_2539 0.64 +0.2
2,955,012 + Psyr_2539 0.64 +0.8
2,955,219 + Psyr_2539 0.86 -1.1
2,955,219 + Psyr_2539 0.86 -1.1
2,955,219 + Psyr_2539 0.86 +1.8
2,955,219 + Psyr_2539 0.86 -0.6
2,955,219 + Psyr_2539 0.86 -0.4
2,955,220 - Psyr_2539 0.86 +0.9
2,955,220 - Psyr_2539 0.86 -0.2
2,955,220 - Psyr_2539 0.86 -0.6
2,955,237 + Psyr_2539 0.88 +0.4
2,955,366 + +1.5

Or see this region's nucleotide sequence