Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2493

Experiment: KB with Nalidixic 12.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Nalidixic 12.5 ug/ml
2,902,110	+		Psyr_2492	0.80	+0.5
2,902,132	+		Psyr_2492	0.81	-1.2
2,902,132	+		Psyr_2492	0.81	-2.3
2,902,133	-		Psyr_2492	0.81	-3.1
2,902,133	-		Psyr_2492	0.81	+0.1
2,902,243	-		Psyr_2492	0.85	-0.0
2,902,444	-				-0.2
2,902,480	+				+0.7
2,902,480	+				+1.6
2,902,480	+				+1.2
2,902,481	-				+0.4
2,902,486	+				-0.5
2,902,486	+				-0.7
2,902,486	+				+2.4
2,902,486	+				+0.6
2,902,486	+				-0.7
2,902,487	-				-0.1
2,902,487	-				+0.6
2,902,487	-				-0.2
2,902,487	-				+1.6
2,902,487	-				+0.4
2,902,609	+				+0.4
2,902,613	-				+0.2
2,902,731	-				-1.3
2,902,864	-				-1.3
2,902,874	+				-1.4
2,902,874	+				-1.7
2,902,883	+				-0.4
2,902,884	-				-1.1
2,902,899	-				+2.3
2,903,000	+				+0.9
2,903,090	+		Psyr_2493	0.13	-0.3
2,903,090	+		Psyr_2493	0.13	+0.1
2,903,137	-		Psyr_2493	0.17	-0.2
2,903,143	+		Psyr_2493	0.18	-0.9
2,903,390	+		Psyr_2493	0.38	-0.0
2,903,390	+		Psyr_2493	0.38	-0.8
2,903,645	+		Psyr_2493	0.59	-1.4
2,903,645	+		Psyr_2493	0.59	+0.2
2,903,890	-		Psyr_2493	0.79	+1.1
2,903,890	-		Psyr_2493	0.79	-0.1
2,903,937	-		Psyr_2493	0.83	-0.6
2,903,937	-		Psyr_2493	0.83	+0.2
2,904,027	+		Psyr_2493	0.90	-1.3
2,904,050	+				-1.7
2,904,167	-				-0.7
2,904,188	-				-0.7
2,904,228	+				-0.5
2,904,259	+				+1.2
2,904,263	-				-1.8
2,904,351	+				-1.2
2,904,351	+				+1.3
2,904,351	+				+0.4
2,904,352	-				-2.0
2,904,352	-				-1.2
2,904,352	-				-0.9
2,904,352	-				+0.7
2,904,352	-				-1.9
2,904,352	-				+0.2
2,904,352	-				-2.0
2,904,353	+				-1.2
2,904,354	-				-0.3
2,904,598	-		Psyr_2494	0.28	-1.7
2,904,643	-		Psyr_2494	0.32	-0.7
2,904,643	-		Psyr_2494	0.32	+1.4
2,904,711	+		Psyr_2494	0.38	+0.2
2,904,711	+		Psyr_2494	0.38	-0.3
2,904,711	+		Psyr_2494	0.38	+1.1
2,904,711	+		Psyr_2494	0.38	+1.0
2,904,712	-		Psyr_2494	0.38	-0.3
2,904,712	-		Psyr_2494	0.38	-0.3
2,904,852	+		Psyr_2494	0.51	-1.6
2,904,852	+		Psyr_2494	0.51	+0.7
2,904,852	+		Psyr_2494	0.51	+0.3
2,904,853	-		Psyr_2494	0.51	-0.2
2,904,853	-		Psyr_2494	0.51	-0.9
2,904,853	-		Psyr_2494	0.51	+0.4
2,904,918	+		Psyr_2494	0.57	+2.1
2,904,918	+		Psyr_2494	0.57	+0.3
2,904,918	+		Psyr_2494	0.57	+1.3
2,904,918	+		Psyr_2494	0.57	-0.3
2,904,919	-		Psyr_2494	0.57	+0.5