Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2429

Experiment: KB with Nalidixic 12.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Nalidixic 12.5 ug/ml
2,810,131	+		Psyr_2428	0.59	+0.6
2,810,131	+		Psyr_2428	0.59	+0.3
2,810,150	+		Psyr_2428	0.63	+0.0
2,810,154	-		Psyr_2428	0.64	+0.2
2,810,217	+		Psyr_2428	0.77	+2.0
2,810,217	+		Psyr_2428	0.77	-0.1
2,810,218	-		Psyr_2428	0.77	-1.2
2,810,373	+				-0.2
2,810,411	+				-0.6
2,810,416	+				-0.9
2,810,416	+				+0.9
2,810,428	-				-1.3
2,810,428	-				-1.3
2,810,654	+				+0.2
2,810,654	+				-0.2
2,810,654	+				+1.6
2,810,654	+				-0.3
2,810,655	-				+0.0
2,810,655	-				-0.4
2,810,655	-				-1.0
2,810,667	-				-0.5
2,810,667	-				+0.3
2,810,683	+				+1.4
2,810,707	-				-2.2
2,810,712	+				+2.9
2,810,712	+				+0.6
2,810,713	-				-1.6
2,810,713	-				+1.0
2,810,721	+				-0.7
2,810,722	-				-0.2
2,810,722	-				+0.0
2,810,722	-				+0.4
2,810,725	+				+2.1
2,810,725	+				+0.1
2,810,726	-				+1.6
2,810,726	-				+0.4
2,811,060	+				-0.1
2,811,060	+				+0.3
2,811,406	-		Psyr_2429	0.27	+1.6
2,811,615	+		Psyr_2429	0.47	+1.2
2,811,744	+		Psyr_2429	0.59	+0.2
2,811,747	+		Psyr_2429	0.59	+0.4
2,811,747	+		Psyr_2429	0.59	-1.7
2,811,748	-		Psyr_2429	0.60	-0.2
2,811,748	-		Psyr_2429	0.60	-0.3
2,811,748	-		Psyr_2429	0.60	-1.0
2,811,816	+		Psyr_2429	0.66	+0.6
2,811,817	-		Psyr_2429	0.66	-0.4
2,811,837	+		Psyr_2429	0.68	-1.0
2,811,837	+		Psyr_2429	0.68	+0.9
2,811,837	+				+0.9
2,811,838	-		Psyr_2429	0.68	+1.9
2,811,838	-		Psyr_2429	0.68	-0.7
2,812,052	+		Psyr_2429	0.88	+1.0
2,812,052	+		Psyr_2429	0.88	+1.2
2,812,113	-				-1.3
2,812,178	-				-1.0
2,812,205	+				-0.4
2,812,205	+				-1.4
2,812,205	+				-1.7
2,812,256	+				-1.0
2,812,256	+				-0.6
2,812,257	-				-0.3
2,812,257	-				-0.6
2,812,269	-				-1.0
2,812,320	-		Psyr_2430	0.13	+1.6
2,812,454	+		Psyr_2430	0.47	-1.2
2,812,455	-		Psyr_2430	0.47	-1.0
2,812,478	+		Psyr_2430	0.53	-1.0
2,812,478	+		Psyr_2430	0.53	+0.4
2,812,479	-		Psyr_2430	0.53	-2.6
2,812,479	-		Psyr_2430	0.53	-1.6
2,812,490	+		Psyr_2430	0.56	-0.6
2,812,570	+		Psyr_2430	0.76	-0.2
2,812,570	+		Psyr_2430	0.76	-1.6
2,812,570	+		Psyr_2430	0.76	-0.6
2,812,571	-		Psyr_2430	0.76	-2.1
2,812,616	+		Psyr_2430	0.87	-0.4
2,812,616	+		Psyr_2430	0.87	-0.7
2,812,617	-		Psyr_2430	0.88	+0.3
2,812,617	-		Psyr_2430	0.88	-0.2
2,812,682	-				+0.0
2,812,682	-				-1.2
2,812,701	+				-0.5
2,812,701	+				+0.2
2,812,701	+				+0.0
2,812,701	+				+0.9
2,812,702	-				+2.0
2,812,702	-				+0.6
2,812,748	-				-1.3
2,812,870	+				+1.6
2,812,871	-				+0.3
2,812,875	+				+2.2
2,812,875	+				-0.8
2,812,925	-				-0.1
2,813,032	+				-1.3