Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2417

Experiment: KB with Nalidixic 12.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Nalidixic 12.5 ug/ml
2,799,199	+		Psyr_2415	0.15	-0.3
2,799,324	+		Psyr_2415	0.38	+1.2
2,799,324	+		Psyr_2415	0.38	-0.6
2,799,325	-		Psyr_2415	0.38	+1.6
2,799,325	-		Psyr_2415	0.38	+1.6
2,799,325	-		Psyr_2415	0.38	-0.8
2,799,344	+		Psyr_2415	0.41	+0.0
2,799,363	-		Psyr_2415	0.45	-2.3
2,799,450	-		Psyr_2415	0.60	-0.8
2,799,450	-		Psyr_2415	0.60	-0.4
2,799,870	-		Psyr_2416	0.55	-1.4
2,799,940	+				-0.6
2,799,940	+				+0.4
2,799,940	+				+2.8
2,799,940	+				+1.1
2,799,941	-				-1.2
2,799,941	-				+0.3
2,799,941	-				-0.6
2,799,941	-				-1.8
2,799,941	-				-1.2
2,799,951	+				+1.0
2,799,951	+				+1.0
2,799,951	+				+0.6
2,799,952	-				-0.7
2,799,952	-				+0.6
2,799,952	-				-0.2
2,799,952	-				-0.4
2,799,952	-				-1.6
2,799,952	-				+0.0
2,799,952	-				-1.0
2,799,981	+				-0.2
2,799,981	+				-0.3
2,799,982	-				-0.2
2,800,034	-				+0.5
2,800,152	+				-0.4
2,800,152	+				-1.2
2,800,152	+				-1.6
2,800,153	-				+1.6
2,800,155	+				+0.2
2,800,156	-				+0.7
2,800,188	+		Psyr_2417	0.18	-0.4
2,800,188	+		Psyr_2417	0.18	-0.6
2,800,233	+		Psyr_2417	0.31	-1.0
2,800,252	-		Psyr_2417	0.36	-1.2
2,800,252	-		Psyr_2417	0.36	-0.4
2,800,254	+		Psyr_2417	0.36	+0.6
2,800,254	+		Psyr_2417	0.36	-1.6
2,800,255	-		Psyr_2417	0.37	+0.0
2,800,275	+		Psyr_2417	0.42	-0.1
2,800,275	+		Psyr_2417	0.42	-1.4
2,800,276	-		Psyr_2417	0.43	+0.7
2,800,293	-		Psyr_2417	0.47	-0.4
2,800,293	-		Psyr_2417	0.47	-1.0
2,800,296	+		Psyr_2417	0.48	+0.4
2,800,296	+		Psyr_2417	0.48	-1.2
2,800,297	-		Psyr_2417	0.48	+0.3
2,800,317	+		Psyr_2417	0.54	+0.5
2,800,317	+		Psyr_2417	0.54	-2.6
2,800,318	-		Psyr_2417	0.54	-1.4
2,800,318	-		Psyr_2417	0.54	+0.1
2,800,382	+		Psyr_2417	0.72	-1.8
2,800,382	+		Psyr_2417	0.72	-1.0
2,800,445	+				-0.7
2,800,445	+				-1.2
2,800,446	-				+2.1
2,800,446	-				-1.0
2,800,550	+				+0.4
2,800,550	+				-0.7
2,800,550	+				+0.4
2,800,550	+				-0.0
2,800,551	-				+1.6
2,800,551	-				+1.0
2,800,551	-				+1.6
2,800,600	+				-0.5
2,800,600	+				+0.0
2,800,600	+				+0.6
2,800,600	+				-2.0
2,800,600	+				-0.3
2,800,600	+				-0.6
2,800,601	-				+0.4
2,800,601	-				+0.1
2,800,601	-				+0.0
2,800,601	-				-0.2
2,800,614	+				+0.9
2,800,615	-				+0.9
2,800,615	-				-0.4
2,800,615	-				+0.5
2,800,639	-				+1.6
2,800,643	+				+0.9
2,800,643	+				-0.1
2,800,644	-				+0.6
2,800,644	-				+0.4
2,800,652	-				+0.2
2,800,652	-				+1.3
2,800,707	-				+0.6
2,800,707	-				-1.0
2,800,720	+				+0.0
2,800,721	-				+0.6
2,800,773	-				+0.8
2,800,783	-		Psyr_2418	0.11	+0.9
2,800,793	-		Psyr_2418	0.12	-0.6
2,800,806	+		Psyr_2418	0.14	-2.0
2,800,807	-		Psyr_2418	0.14	-1.0
2,800,809	+		Psyr_2418	0.14	+0.9
2,800,809	+		Psyr_2418	0.14	-1.0
2,800,810	-		Psyr_2418	0.14	-0.5
2,800,810	-		Psyr_2418	0.14	+1.9
2,800,964	+		Psyr_2418	0.33	-0.4
2,801,010	+		Psyr_2418	0.39	-0.1
2,801,010	+		Psyr_2418	0.39	+0.8
2,801,010	+		Psyr_2418	0.39	-0.6
2,801,010	+		Psyr_2418	0.39	+1.6
2,801,010	+		Psyr_2418	0.39	-0.8
2,801,011	-		Psyr_2418	0.39	+1.3
2,801,011	-		Psyr_2418	0.39	-0.1
2,801,442	+				+0.3
2,801,442	+				-0.4
2,801,443	-				-0.4
2,801,443	-				-1.5
2,801,473	-				-0.6