Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2370

Experiment: KB with Nalidixic 12.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Nalidixic 12.5 ug/ml
2,747,255	+		Psyr_2369	0.40	-1.0
2,747,255	+		Psyr_2369	0.40	+0.3
2,747,255	+		Psyr_2369	0.40	-2.3
2,747,256	-		Psyr_2369	0.40	+0.6
2,747,256	-		Psyr_2369	0.40	+0.0
2,747,324	+		Psyr_2369	0.46	-1.0
2,747,324	+		Psyr_2369	0.46	+0.6
2,747,324	+		Psyr_2369	0.46	+0.0
2,747,325	-		Psyr_2369	0.46	-0.7
2,747,409	+		Psyr_2369	0.53	-1.7
2,747,409	+		Psyr_2369	0.53	-1.6
2,747,411	+		Psyr_2369	0.53	-2.8
2,747,411	+		Psyr_2369	0.53	-3.2
2,747,412	-		Psyr_2369	0.53	-2.2
2,747,412	-		Psyr_2369	0.53	-1.4
2,747,412	-		Psyr_2369	0.53	+0.0
2,747,468	+		Psyr_2369	0.58	-0.9
2,747,468	+		Psyr_2369	0.58	+0.5
2,747,468	+		Psyr_2369	0.58	-1.0
2,747,468	+		Psyr_2369	0.58	-0.7
2,747,468	+		Psyr_2369	0.58	-0.7
2,747,469	-		Psyr_2369	0.58	+0.0
2,747,469	-		Psyr_2369	0.58	-0.6
2,747,469	-		Psyr_2369	0.58	-0.1
2,747,588	+		Psyr_2369	0.69	+0.9
2,747,588	+		Psyr_2369	0.69	+1.2
2,747,740	+		Psyr_2369	0.82	-0.9
2,747,741	-		Psyr_2369	0.82	+0.5
2,747,769	-		Psyr_2369	0.85	+0.7
2,747,813	+		Psyr_2369	0.88	-1.0
2,747,813	+		Psyr_2369	0.88	+1.3
2,747,982	-				+1.6
2,748,013	+				-0.3
2,748,013	+				+0.5
2,748,013	+				+0.3
2,748,013	+				+0.4
2,748,013	+				+0.6
2,748,013	+				+1.6
2,748,013	+				-0.3
2,748,013	+				+1.0
2,748,013	+				-1.2
2,748,013	+				+0.9
2,748,013	+				+0.0
2,748,013	+				+1.6
2,748,013	+				+0.0
2,748,013	+				-0.9
2,748,013	+				+1.8
2,748,013	+				+0.7
2,748,013	+				+0.0
2,748,013	+				+1.6
2,748,013	+				+0.5
2,748,013	+				-0.9
2,748,014	-				+0.9
2,748,014	-				+0.0
2,748,014	-				-0.1
2,748,014	-				-2.3
2,748,014	-				+0.4
2,748,014	-				+2.3
2,748,014	-				+1.1
2,748,014	-				-2.5
2,748,014	-				+0.6
2,748,014	-				-0.4
2,748,014	-				-0.9
2,748,014	-				-0.2
2,748,014	-				+1.0
2,748,014	-				+0.3
2,748,014	-				-1.2
2,748,014	-				-0.9
2,748,014	-				-1.6
2,748,014	-				+1.2
2,748,014	-				+0.6
2,748,014	-				-0.2
2,748,014	-				-0.3
2,748,014	-				-0.4
2,748,014	-				-0.2
2,748,014	-				-1.0
2,748,014	-				-0.7
2,748,014	-				-0.6
2,748,014	-				+0.4
2,748,014	-				+0.0
2,748,014	-				-1.2
2,748,014	-				+0.1
2,748,014	-				-0.2
2,748,014	-				-2.4
2,748,014	-				-0.5
2,748,014	-				+1.0
2,748,023	-				+0.3
2,748,091	+				+1.3
2,748,092	-				-1.1
2,748,092	-				-0.8
2,748,092	-				-0.7
2,748,201	+				+0.2
2,748,201	+				+0.8
2,748,210	-				+2.2
2,748,305	+				-0.4
2,748,394	+		Psyr_2370	0.19	+1.0
2,748,444	-		Psyr_2370	0.25	-1.4
2,748,607	-		Psyr_2370	0.44	+0.6
2,748,722	+		Psyr_2370	0.57	+1.0
2,748,753	-		Psyr_2370	0.60	+0.9
2,748,753	-		Psyr_2370	0.60	+0.0
2,748,753	-		Psyr_2370	0.60	+0.2
2,748,798	+		Psyr_2370	0.65	-0.4
2,748,798	+		Psyr_2370	0.65	+1.2
2,748,857	+		Psyr_2370	0.72	+0.9
2,748,858	-		Psyr_2370	0.72	-2.1
2,748,963	+		Psyr_2370	0.84	-0.4
2,748,992	+		Psyr_2370	0.88	+1.6
2,748,993	-		Psyr_2370	0.88	+1.0
2,748,993	-		Psyr_2370	0.88	+0.2
2,748,993	-		Psyr_2370	0.88	+0.6
2,748,993	-		Psyr_2370	0.88	-0.1
2,749,133	+				-1.0
2,749,134	-				+0.6
2,749,152	+				+0.9
2,749,152	+				+0.4
2,749,152	+				-1.1
2,749,152	+				-0.1
2,749,153	-				-0.5
2,749,170	+				+0.6
2,749,170	+				+1.6
2,749,170	+				-0.1
2,749,170	+				-1.5
2,749,170	+				+0.3
2,749,170	+				+0.1
2,749,171	-				+0.4
2,749,171	-				-0.7
2,749,171	-				-0.9
2,749,175	+				-0.4
2,749,176	-				+1.6
2,749,176	-				+1.8
2,749,176	-				-0.7
2,749,176	-				-0.7
2,749,176	-				-1.8
2,749,176	-				-0.8
2,749,176	-				+0.9
2,749,179	+				+1.6
2,749,179	+				-1.2
2,749,193	+				+0.8
2,749,193	+				-2.1
2,749,195	+				+0.3
2,749,196	-				+0.5
2,749,200	+				-1.9
2,749,200	+				+0.0
2,749,206	+				+0.3
2,749,207	-				+0.0
2,749,263	-				-2.2
2,749,263	-				+0.2
2,749,263	-				-1.2
2,749,266	+				-0.5
2,749,266	+				+0.9
2,749,287	+				-1.1
2,749,288	-				-1.4
2,749,288	-				+0.6
2,749,291	+				+0.6
2,749,291	+				-1.1
2,749,291	+				-1.0
2,749,291	+				-0.2
2,749,291	+				+0.6
2,749,291	+				-0.9
2,749,291	+				-1.4
2,749,291	+				-0.7
2,749,292	-				+2.6
2,749,292	-				-0.4
2,749,292	-				-0.4
2,749,292	-				+1.0
2,749,292	-				+0.6
2,749,793	+		Psyr_2371	0.49	+0.6
2,749,794	-		Psyr_2371	0.50	-1.6
2,749,811	+		Psyr_2371	0.51	+0.1
2,749,811	+		Psyr_2371	0.51	+2.0
2,749,811	+		Psyr_2371	0.51	+2.2
2,749,811	+		Psyr_2371	0.51	+2.3
2,749,811	+		Psyr_2371	0.51	+1.1
2,749,811	+		Psyr_2371	0.51	+1.0
2,749,811	+		Psyr_2371	0.51	+1.1
2,749,812	-		Psyr_2371	0.51	-0.9
2,749,812	-		Psyr_2371	0.51	-0.4
2,749,812	-		Psyr_2371	0.51	-1.4
2,749,812	-		Psyr_2371	0.51	-0.2
2,749,812	-		Psyr_2371	0.51	+1.0
2,749,814	-		Psyr_2371	0.51	+1.1
2,749,814	-		Psyr_2371	0.51	-0.1
2,749,931	-		Psyr_2371	0.63	+0.6
2,750,042	-		Psyr_2371	0.74	+0.6