Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2140

Experiment: KB with Nalidixic 12.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Nalidixic 12.5 ug/ml
2,499,101	+		Psyr_2139	0.62	+2.5
2,499,506	+		Psyr_2139	0.84	-0.1
2,499,506	+		Psyr_2139	0.84	-1.3
2,499,507	-		Psyr_2139	0.84	+1.0
2,499,507	-		Psyr_2139	0.84	+1.5
2,499,522	-		Psyr_2139	0.85	+0.1
2,499,596	+		Psyr_2139	0.89	-0.5
2,499,617	-				+1.7
2,499,687	+				+0.1
2,499,688	-				+0.8
2,499,755	+				+0.7
2,499,795	+				-0.1
2,499,795	+				+0.5
2,499,795	+				+3.5
2,499,795	+				-1.7
2,499,795	+				-0.3
2,499,795	+				-0.5
2,499,795	+				+2.1
2,499,796	-				-0.5
2,499,796	-				+0.6
2,499,811	+				-1.0
2,499,812	-				-0.4
2,499,841	+				-1.8
2,499,861	-				+0.2
2,499,906	+				-0.8
2,499,906	+				+0.4
2,499,984	+				-1.8
2,499,985	-				+2.1
2,499,985	-				-0.8
2,500,157	+		Psyr_2140	0.62	+1.7
2,500,157	+		Psyr_2140	0.62	+0.2
2,500,157	+		Psyr_2140	0.62	+0.1
2,500,158	-		Psyr_2140	0.62	-1.1
2,500,158	-		Psyr_2140	0.62	-2.4
2,500,158	-		Psyr_2140	0.62	+0.2
2,500,158	-		Psyr_2140	0.62	-1.3
2,500,158	-		Psyr_2140	0.62	-1.8
2,500,226	+				-0.8
2,500,227	-				+0.0
2,500,309	+		Psyr_2141	0.16	+0.5
2,500,309	+		Psyr_2141	0.16	-1.3
2,500,309	+		Psyr_2141	0.16	-1.1
2,500,310	-		Psyr_2141	0.16	+0.2
2,500,310	-		Psyr_2141	0.16	-0.2
2,500,420	-		Psyr_2141	0.44	-1.3
2,500,665	+				+0.4
2,500,679	+				+0.5
2,500,679	+				+1.2
2,500,679	+				-1.5
2,500,679	+				+1.5
2,500,680	-				+1.5
2,500,680	-				-0.8
2,500,682	+				+0.5
2,500,683	-				+1.5
2,500,683	-				-1.4
2,500,683	-				+0.9
2,500,713	-				-0.5
2,500,778	-				-0.1
2,500,933	+				-0.8
2,500,933	+				-0.6
2,500,933	+				-1.0
2,500,933	+				+0.8
2,500,933	+				-2.7
2,500,933	+				-0.6
2,500,934	-				-0.5
2,500,934	-				-1.8
2,500,934	-				-1.1
2,500,934	-				-1.5
2,500,934	-				-0.7
2,500,934	-				-2.5
2,500,934	-				+0.2
2,500,934	-				-1.7
2,500,934	-				-2.2
2,500,934	-				+0.2
2,500,990	+		Psyr_2142	0.12	-1.3
2,500,991	-		Psyr_2142	0.12	-1.7
2,500,991	-		Psyr_2142	0.12	-0.8
2,501,182	+		Psyr_2142	0.31	+0.7
2,501,183	-		Psyr_2142	0.31	-2.0