Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2139

Experiment: KB with Nalidixic 12.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Nalidixic 12.5 ug/ml
2,497,015	+				-1.8
2,497,015	+				+0.9
2,497,015	+				+0.6
2,497,015	+				+0.3
2,497,015	+				+0.1
2,497,015	+				+1.5
2,497,016	-				+0.3
2,497,016	-				+1.1
2,497,016	-				-1.3
2,497,016	-				-1.5
2,497,016	-				-0.1
2,497,016	-				+0.5
2,497,016	-				+0.9
2,497,058	+				-1.5
2,497,059	-				+1.6
2,497,059	-				+0.6
2,497,263	-		Psyr_2138	0.26	+0.9
2,497,263	-		Psyr_2138	0.26	-0.3
2,497,263	-		Psyr_2138	0.26	-0.5
2,497,271	+		Psyr_2138	0.27	-0.3
2,497,271	+		Psyr_2138	0.27	-1.3
2,497,271	+		Psyr_2138	0.27	-1.5
2,497,271	+		Psyr_2138	0.27	+1.5
2,497,271	+		Psyr_2138	0.27	+0.2
2,497,271	+		Psyr_2138	0.27	+0.9
2,497,271	+		Psyr_2138	0.27	-1.8
2,497,271	+		Psyr_2138	0.27	-2.2
2,497,271	+		Psyr_2138	0.27	-0.1
2,497,271	+		Psyr_2138	0.27	-0.4
2,497,271	+		Psyr_2138	0.27	-0.1
2,497,272	-		Psyr_2138	0.27	+1.1
2,497,272	-		Psyr_2138	0.27	+0.3
2,497,272	-		Psyr_2138	0.27	-0.5
2,497,272	-		Psyr_2138	0.27	+1.5
2,497,272	-		Psyr_2138	0.27	+0.5
2,497,272	-		Psyr_2138	0.27	+0.9
2,497,272	-		Psyr_2138	0.27	-1.3
2,497,272	-		Psyr_2138	0.27	+1.7
2,497,272	-		Psyr_2138	0.27	-1.1
2,497,272	-		Psyr_2138	0.27	-1.3
2,497,272	-		Psyr_2138	0.27	+1.5
2,497,272	-		Psyr_2138	0.27	+0.2
2,497,295	+		Psyr_2138	0.29	+0.9
2,497,295	+		Psyr_2138	0.29	+0.9
2,497,295	+		Psyr_2138	0.29	-0.3
2,497,295	+		Psyr_2138	0.29	-0.8
2,497,296	-		Psyr_2138	0.30	+1.0
2,497,296	-		Psyr_2138	0.30	+0.8
2,497,296	-		Psyr_2138	0.30	-2.2
2,497,296	-		Psyr_2138	0.30	+0.4
2,497,296	-		Psyr_2138	0.30	-1.5
2,497,296	-		Psyr_2138	0.30	+0.8
2,497,580	+		Psyr_2138	0.60	+1.5
2,497,580	+		Psyr_2138	0.60	+1.1
2,497,580	+		Psyr_2138	0.60	-0.4
2,497,580	+		Psyr_2138	0.60	+0.5
2,497,580	+		Psyr_2138	0.60	-1.1
2,497,580	+		Psyr_2138	0.60	-2.3
2,497,580	+		Psyr_2138	0.60	+1.1
2,497,580	+		Psyr_2138	0.60	-1.3
2,497,580	+		Psyr_2138	0.60	-1.0
2,497,580	+		Psyr_2138	0.60	+0.5
2,497,580	+		Psyr_2138	0.60	-0.3
2,497,580	+		Psyr_2138	0.60	+0.5
2,497,580	+		Psyr_2138	0.60	-0.2
2,497,580	+		Psyr_2138	0.60	-0.6
2,497,580	+		Psyr_2138	0.60	-0.2
2,497,580	+		Psyr_2138	0.60	-2.7
2,497,580	+		Psyr_2138	0.60	-0.5
2,497,580	+		Psyr_2138	0.60	-0.1
2,497,580	+		Psyr_2138	0.60	+0.5
2,497,581	-		Psyr_2138	0.60	-0.5
2,497,581	-		Psyr_2138	0.60	+0.2
2,497,581	-		Psyr_2138	0.60	+0.0
2,497,581	-		Psyr_2138	0.60	+0.5
2,497,581	-		Psyr_2138	0.60	+0.0
2,497,581	-		Psyr_2138	0.60	+1.1
2,497,581	-		Psyr_2138	0.60	-0.8
2,497,581	-		Psyr_2138	0.60	-0.5
2,497,581	-		Psyr_2138	0.60	+0.9
2,497,581	-		Psyr_2138	0.60	+0.8
2,497,581	-		Psyr_2138	0.60	+0.5
2,497,581	-		Psyr_2138	0.60	+0.5
2,497,581	-		Psyr_2138	0.60	+0.5
2,497,581	-		Psyr_2138	0.60	+1.7
2,497,581	-		Psyr_2138	0.60	+2.7
2,497,581	-		Psyr_2138	0.60	+0.1
2,497,581	-		Psyr_2138	0.60	+0.9
2,497,581	-		Psyr_2138	0.60	-0.5
2,497,622	+		Psyr_2138	0.65	+0.2
2,497,658	+		Psyr_2138	0.69	+1.9
2,497,658	+		Psyr_2138	0.69	+1.8
2,497,658	+		Psyr_2138	0.69	-0.7
2,497,659	-		Psyr_2138	0.69	-0.1
2,497,659	-				+1.5
2,497,659	-		Psyr_2138	0.69	+0.8
2,497,766	+		Psyr_2138	0.80	+0.1
2,497,766	+		Psyr_2138	0.80	+1.4
2,497,766	+		Psyr_2138	0.80	+0.4
2,497,834	+		Psyr_2138	0.88	-0.5
2,497,856	+				+0.5
2,497,857	-				-0.7
2,497,857	-				+0.5
2,497,916	+				-0.5
2,497,916	+				-0.3
2,497,917	-				-0.1
2,497,917	-				-0.4
2,498,088	+				+0.7
2,498,088	+				-1.4
2,498,088	+				-0.2
2,498,088	+				-2.0
2,498,088	+				-1.1
2,498,088	+				+0.9
2,498,089	-				-2.7
2,498,089	-				+0.2
2,498,214	+		Psyr_2139	0.13	+0.3
2,498,373	+		Psyr_2139	0.21	+0.5
2,498,373	+		Psyr_2139	0.21	+0.5
2,498,374	-		Psyr_2139	0.22	+1.0
2,498,374	-		Psyr_2139	0.22	-1.7
2,498,374	-		Psyr_2139	0.22	+0.5
2,498,405	+		Psyr_2139	0.23	-0.7
2,498,405	+		Psyr_2139	0.23	-0.3
2,498,406	-		Psyr_2139	0.23	-2.2
2,498,430	+		Psyr_2139	0.25	-2.4
2,498,431	-		Psyr_2139	0.25	-1.0
2,498,431	-		Psyr_2139	0.25	-0.8
2,498,441	+		Psyr_2139	0.25	+0.3
2,498,598	+		Psyr_2139	0.34	+0.1
2,498,712	+		Psyr_2139	0.40	-1.1
2,498,713	-		Psyr_2139	0.40	+1.0
2,498,789	+		Psyr_2139	0.44	-2.4
2,498,972	+		Psyr_2139	0.55	-0.3
2,499,016	-		Psyr_2139	0.57	-1.1
2,499,101	+		Psyr_2139	0.62	+2.5
2,499,506	+		Psyr_2139	0.84	-0.1
2,499,506	+		Psyr_2139	0.84	-1.3
2,499,507	-		Psyr_2139	0.84	+1.0
2,499,507	-		Psyr_2139	0.84	+1.5
2,499,522	-		Psyr_2139	0.85	+0.1
2,499,596	+		Psyr_2139	0.89	-0.5
2,499,617	-				+1.7
2,499,687	+				+0.1
2,499,688	-				+0.8
2,499,755	+				+0.7
2,499,795	+				-0.1
2,499,795	+				+0.5
2,499,795	+				+3.5
2,499,795	+				-1.7
2,499,795	+				-0.3
2,499,795	+				-0.5
2,499,795	+				+2.1
2,499,796	-				-0.5
2,499,796	-				+0.6
2,499,811	+				-1.0
2,499,812	-				-0.4
2,499,841	+				-1.8
2,499,861	-				+0.2
2,499,906	+				-0.8
2,499,906	+				+0.4
2,499,984	+				-1.8
2,499,985	-				+2.1
2,499,985	-				-0.8
2,500,157	+		Psyr_2140	0.62	+1.7
2,500,157	+		Psyr_2140	0.62	+0.2
2,500,157	+		Psyr_2140	0.62	+0.1
2,500,158	-		Psyr_2140	0.62	-1.1
2,500,158	-		Psyr_2140	0.62	-2.4
2,500,158	-		Psyr_2140	0.62	+0.2
2,500,158	-		Psyr_2140	0.62	-1.3
2,500,158	-		Psyr_2140	0.62	-1.8
2,500,226	+				-0.8
2,500,227	-				+0.0
2,500,309	+		Psyr_2141	0.16	+0.5
2,500,309	+		Psyr_2141	0.16	-1.3
2,500,309	+		Psyr_2141	0.16	-1.1
2,500,310	-		Psyr_2141	0.16	+0.2
2,500,310	-		Psyr_2141	0.16	-0.2
2,500,420	-		Psyr_2141	0.44	-1.3
2,500,665	+				+0.4
2,500,679	+				+0.5
2,500,679	+				+1.2
2,500,679	+				-1.5
2,500,679	+				+1.5
2,500,680	-				+1.5
2,500,680	-				-0.8
2,500,682	+				+0.5
2,500,683	-				+1.5
2,500,683	-				-1.4
2,500,683	-				+0.9
2,500,713	-				-0.5
2,500,778	-				-0.1