Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2138

Experiment: KB with Nalidixic 12.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2137 and Psyr_2138 are separated by 89 nucleotidesPsyr_2138 and Psyr_2139 are separated by 36 nucleotides Psyr_2137: Psyr_2137 - molybdopterin molybdochelatase, at 2,495,721 to 2,496,932 _2137 Psyr_2138: Psyr_2138 - Glycosyl transferase, family 2, at 2,497,022 to 2,497,948 _2138 Psyr_2139: Psyr_2139 - Kef-type potassium/proton antiporter, CPA2 family, at 2,497,985 to 2,499,793 _2139 Position (kb) 2497 2498Strain fitness (log2 ratio) -2 -1 0 1 2at 2496.330 kb on + strand, within Psyr_2137at 2496.330 kb on + strand, within Psyr_2137at 2496.330 kb on + strand, within Psyr_2137at 2496.331 kb on - strand, within Psyr_2137at 2496.667 kb on - strand, within Psyr_2137at 2496.823 kb on + strandat 2496.824 kb on - strandat 2496.968 kb on - strandat 2496.968 kb on - strandat 2497.015 kb on + strandat 2497.015 kb on + strandat 2497.015 kb on + strandat 2497.015 kb on + strandat 2497.015 kb on + strandat 2497.015 kb on + strandat 2497.016 kb on - strandat 2497.016 kb on - strandat 2497.016 kb on - strandat 2497.016 kb on - strandat 2497.016 kb on - strandat 2497.016 kb on - strandat 2497.016 kb on - strandat 2497.058 kb on + strandat 2497.059 kb on - strandat 2497.059 kb on - strandat 2497.263 kb on - strand, within Psyr_2138at 2497.263 kb on - strand, within Psyr_2138at 2497.263 kb on - strand, within Psyr_2138at 2497.271 kb on + strand, within Psyr_2138at 2497.271 kb on + strand, within Psyr_2138at 2497.271 kb on + strand, within Psyr_2138at 2497.271 kb on + strand, within Psyr_2138at 2497.271 kb on + strand, within Psyr_2138at 2497.271 kb on + strand, within Psyr_2138at 2497.271 kb on + strand, within Psyr_2138at 2497.271 kb on + strand, within Psyr_2138at 2497.271 kb on + strand, within Psyr_2138at 2497.271 kb on + strand, within Psyr_2138at 2497.271 kb on + strand, within Psyr_2138at 2497.272 kb on - strand, within Psyr_2138at 2497.272 kb on - strand, within Psyr_2138at 2497.272 kb on - strand, within Psyr_2138at 2497.272 kb on - strand, within Psyr_2138at 2497.272 kb on - strand, within Psyr_2138at 2497.272 kb on - strand, within Psyr_2138at 2497.272 kb on - strand, within Psyr_2138at 2497.272 kb on - strand, within Psyr_2138at 2497.272 kb on - strand, within Psyr_2138at 2497.272 kb on - strand, within Psyr_2138at 2497.272 kb on - strand, within Psyr_2138at 2497.272 kb on - strand, within Psyr_2138at 2497.295 kb on + strand, within Psyr_2138at 2497.295 kb on + strand, within Psyr_2138at 2497.295 kb on + strand, within Psyr_2138at 2497.295 kb on + strand, within Psyr_2138at 2497.296 kb on - strand, within Psyr_2138at 2497.296 kb on - strand, within Psyr_2138at 2497.296 kb on - strand, within Psyr_2138at 2497.296 kb on - strand, within Psyr_2138at 2497.296 kb on - strand, within Psyr_2138at 2497.296 kb on - strand, within Psyr_2138at 2497.580 kb on + strand, within Psyr_2138at 2497.580 kb on + strand, within Psyr_2138at 2497.580 kb on + strand, within Psyr_2138at 2497.580 kb on + strand, within Psyr_2138at 2497.580 kb on + strand, within Psyr_2138at 2497.580 kb on + strand, within Psyr_2138at 2497.580 kb on + strand, within Psyr_2138at 2497.580 kb on + strand, within Psyr_2138at 2497.580 kb on + strand, within Psyr_2138at 2497.580 kb on + strand, within Psyr_2138at 2497.580 kb on + strand, within Psyr_2138at 2497.580 kb on + strand, within Psyr_2138at 2497.580 kb on + strand, within Psyr_2138at 2497.580 kb on + strand, within Psyr_2138at 2497.580 kb on + strand, within Psyr_2138at 2497.580 kb on + strand, within Psyr_2138at 2497.580 kb on + strand, within Psyr_2138at 2497.580 kb on + strand, within Psyr_2138at 2497.580 kb on + strand, within Psyr_2138at 2497.581 kb on - strand, within Psyr_2138at 2497.581 kb on - strand, within Psyr_2138at 2497.581 kb on - strand, within Psyr_2138at 2497.581 kb on - strand, within Psyr_2138at 2497.581 kb on - strand, within Psyr_2138at 2497.581 kb on - strand, within Psyr_2138at 2497.581 kb on - strand, within Psyr_2138at 2497.581 kb on - strand, within Psyr_2138at 2497.581 kb on - strand, within Psyr_2138at 2497.581 kb on - strand, within Psyr_2138at 2497.581 kb on - strand, within Psyr_2138at 2497.581 kb on - strand, within Psyr_2138at 2497.581 kb on - strand, within Psyr_2138at 2497.581 kb on - strand, within Psyr_2138at 2497.581 kb on - strand, within Psyr_2138at 2497.581 kb on - strand, within Psyr_2138at 2497.581 kb on - strand, within Psyr_2138at 2497.581 kb on - strand, within Psyr_2138at 2497.622 kb on + strand, within Psyr_2138at 2497.658 kb on + strand, within Psyr_2138at 2497.658 kb on + strand, within Psyr_2138at 2497.658 kb on + strand, within Psyr_2138at 2497.659 kb on - strand, within Psyr_2138at 2497.659 kb on - strandat 2497.659 kb on - strand, within Psyr_2138at 2497.766 kb on + strand, within Psyr_2138at 2497.766 kb on + strand, within Psyr_2138at 2497.766 kb on + strand, within Psyr_2138at 2497.834 kb on + strand, within Psyr_2138at 2497.856 kb on + strandat 2497.857 kb on - strandat 2497.857 kb on - strandat 2497.916 kb on + strandat 2497.916 kb on + strandat 2497.917 kb on - strandat 2497.917 kb on - strandat 2498.088 kb on + strandat 2498.088 kb on + strandat 2498.088 kb on + strandat 2498.088 kb on + strandat 2498.088 kb on + strandat 2498.088 kb on + strandat 2498.089 kb on - strandat 2498.089 kb on - strandat 2498.214 kb on + strand, within Psyr_2139at 2498.373 kb on + strand, within Psyr_2139at 2498.373 kb on + strand, within Psyr_2139at 2498.374 kb on - strand, within Psyr_2139at 2498.374 kb on - strand, within Psyr_2139at 2498.374 kb on - strand, within Psyr_2139at 2498.405 kb on + strand, within Psyr_2139at 2498.405 kb on + strand, within Psyr_2139at 2498.406 kb on - strand, within Psyr_2139at 2498.430 kb on + strand, within Psyr_2139at 2498.431 kb on - strand, within Psyr_2139at 2498.431 kb on - strand, within Psyr_2139at 2498.441 kb on + strand, within Psyr_2139at 2498.598 kb on + strand, within Psyr_2139at 2498.712 kb on + strand, within Psyr_2139at 2498.713 kb on - strand, within Psyr_2139at 2498.789 kb on + strand, within Psyr_2139

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nalidixic 12.5 ug/ml
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2,496,330 + Psyr_2137 0.50 -0.3
2,496,330 + Psyr_2137 0.50 -1.3
2,496,330 + Psyr_2137 0.50 +1.5
2,496,331 - Psyr_2137 0.50 -0.4
2,496,667 - Psyr_2137 0.78 -2.2
2,496,823 + +0.3
2,496,824 - +1.5
2,496,968 - -0.5
2,496,968 - +0.5
2,497,015 + -1.8
2,497,015 + +0.9
2,497,015 + +0.6
2,497,015 + +0.3
2,497,015 + +0.1
2,497,015 + +1.5
2,497,016 - +0.3
2,497,016 - +1.1
2,497,016 - -1.3
2,497,016 - -1.5
2,497,016 - -0.1
2,497,016 - +0.5
2,497,016 - +0.9
2,497,058 + -1.5
2,497,059 - +1.6
2,497,059 - +0.6
2,497,263 - Psyr_2138 0.26 +0.9
2,497,263 - Psyr_2138 0.26 -0.3
2,497,263 - Psyr_2138 0.26 -0.5
2,497,271 + Psyr_2138 0.27 -0.3
2,497,271 + Psyr_2138 0.27 -1.3
2,497,271 + Psyr_2138 0.27 -1.5
2,497,271 + Psyr_2138 0.27 +1.5
2,497,271 + Psyr_2138 0.27 +0.2
2,497,271 + Psyr_2138 0.27 +0.9
2,497,271 + Psyr_2138 0.27 -1.8
2,497,271 + Psyr_2138 0.27 -2.2
2,497,271 + Psyr_2138 0.27 -0.1
2,497,271 + Psyr_2138 0.27 -0.4
2,497,271 + Psyr_2138 0.27 -0.1
2,497,272 - Psyr_2138 0.27 +1.1
2,497,272 - Psyr_2138 0.27 +0.3
2,497,272 - Psyr_2138 0.27 -0.5
2,497,272 - Psyr_2138 0.27 +1.5
2,497,272 - Psyr_2138 0.27 +0.5
2,497,272 - Psyr_2138 0.27 +0.9
2,497,272 - Psyr_2138 0.27 -1.3
2,497,272 - Psyr_2138 0.27 +1.7
2,497,272 - Psyr_2138 0.27 -1.1
2,497,272 - Psyr_2138 0.27 -1.3
2,497,272 - Psyr_2138 0.27 +1.5
2,497,272 - Psyr_2138 0.27 +0.2
2,497,295 + Psyr_2138 0.29 +0.9
2,497,295 + Psyr_2138 0.29 +0.9
2,497,295 + Psyr_2138 0.29 -0.3
2,497,295 + Psyr_2138 0.29 -0.8
2,497,296 - Psyr_2138 0.30 +1.0
2,497,296 - Psyr_2138 0.30 +0.8
2,497,296 - Psyr_2138 0.30 -2.2
2,497,296 - Psyr_2138 0.30 +0.4
2,497,296 - Psyr_2138 0.30 -1.5
2,497,296 - Psyr_2138 0.30 +0.8
2,497,580 + Psyr_2138 0.60 +1.5
2,497,580 + Psyr_2138 0.60 +1.1
2,497,580 + Psyr_2138 0.60 -0.4
2,497,580 + Psyr_2138 0.60 +0.5
2,497,580 + Psyr_2138 0.60 -1.1
2,497,580 + Psyr_2138 0.60 -2.3
2,497,580 + Psyr_2138 0.60 +1.1
2,497,580 + Psyr_2138 0.60 -1.3
2,497,580 + Psyr_2138 0.60 -1.0
2,497,580 + Psyr_2138 0.60 +0.5
2,497,580 + Psyr_2138 0.60 -0.3
2,497,580 + Psyr_2138 0.60 +0.5
2,497,580 + Psyr_2138 0.60 -0.2
2,497,580 + Psyr_2138 0.60 -0.6
2,497,580 + Psyr_2138 0.60 -0.2
2,497,580 + Psyr_2138 0.60 -2.7
2,497,580 + Psyr_2138 0.60 -0.5
2,497,580 + Psyr_2138 0.60 -0.1
2,497,580 + Psyr_2138 0.60 +0.5
2,497,581 - Psyr_2138 0.60 -0.5
2,497,581 - Psyr_2138 0.60 +0.2
2,497,581 - Psyr_2138 0.60 +0.0
2,497,581 - Psyr_2138 0.60 +0.5
2,497,581 - Psyr_2138 0.60 +0.0
2,497,581 - Psyr_2138 0.60 +1.1
2,497,581 - Psyr_2138 0.60 -0.8
2,497,581 - Psyr_2138 0.60 -0.5
2,497,581 - Psyr_2138 0.60 +0.9
2,497,581 - Psyr_2138 0.60 +0.8
2,497,581 - Psyr_2138 0.60 +0.5
2,497,581 - Psyr_2138 0.60 +0.5
2,497,581 - Psyr_2138 0.60 +0.5
2,497,581 - Psyr_2138 0.60 +1.7
2,497,581 - Psyr_2138 0.60 +2.7
2,497,581 - Psyr_2138 0.60 +0.1
2,497,581 - Psyr_2138 0.60 +0.9
2,497,581 - Psyr_2138 0.60 -0.5
2,497,622 + Psyr_2138 0.65 +0.2
2,497,658 + Psyr_2138 0.69 +1.9
2,497,658 + Psyr_2138 0.69 +1.8
2,497,658 + Psyr_2138 0.69 -0.7
2,497,659 - Psyr_2138 0.69 -0.1
2,497,659 - +1.5
2,497,659 - Psyr_2138 0.69 +0.8
2,497,766 + Psyr_2138 0.80 +0.1
2,497,766 + Psyr_2138 0.80 +1.4
2,497,766 + Psyr_2138 0.80 +0.4
2,497,834 + Psyr_2138 0.88 -0.5
2,497,856 + +0.5
2,497,857 - -0.7
2,497,857 - +0.5
2,497,916 + -0.5
2,497,916 + -0.3
2,497,917 - -0.1
2,497,917 - -0.4
2,498,088 + +0.7
2,498,088 + -1.4
2,498,088 + -0.2
2,498,088 + -2.0
2,498,088 + -1.1
2,498,088 + +0.9
2,498,089 - -2.7
2,498,089 - +0.2
2,498,214 + Psyr_2139 0.13 +0.3
2,498,373 + Psyr_2139 0.21 +0.5
2,498,373 + Psyr_2139 0.21 +0.5
2,498,374 - Psyr_2139 0.22 +1.0
2,498,374 - Psyr_2139 0.22 -1.7
2,498,374 - Psyr_2139 0.22 +0.5
2,498,405 + Psyr_2139 0.23 -0.7
2,498,405 + Psyr_2139 0.23 -0.3
2,498,406 - Psyr_2139 0.23 -2.2
2,498,430 + Psyr_2139 0.25 -2.4
2,498,431 - Psyr_2139 0.25 -1.0
2,498,431 - Psyr_2139 0.25 -0.8
2,498,441 + Psyr_2139 0.25 +0.3
2,498,598 + Psyr_2139 0.34 +0.1
2,498,712 + Psyr_2139 0.40 -1.1
2,498,713 - Psyr_2139 0.40 +1.0
2,498,789 + Psyr_2139 0.44 -2.4

Or see this region's nucleotide sequence