Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2002

Experiment: KB with Nalidixic 12.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Nalidixic 12.5 ug/ml
2,322,570	+				-0.4
2,322,570	+				-1.2
2,322,570	+				+0.6
2,322,571	-				+0.4
2,322,571	-				+1.4
2,322,571	-				+0.8
2,322,571	-				-0.2
2,322,650	+				-1.1
2,322,650	+				+1.4
2,322,650	+				+1.8
2,322,650	+				-2.0
2,322,650	+				+0.4
2,322,651	-				-0.0
2,322,674	-				-0.7
2,322,792	+				-0.6
2,322,831	-				+2.7
2,323,257	+		Psyr_2001	0.72	-0.8
2,323,377	+				+1.4
2,323,377	+				+0.2
2,323,397	+				+0.2
2,323,397	+				-0.9
2,323,397	+				+1.4
2,323,397	+				+0.2
2,323,397	+				-0.7
2,323,397	+				-0.6
2,323,398	-				-1.9
2,323,398	-				+0.4
2,323,398	-				+0.2
2,323,398	-				+1.0
2,323,432	+				+2.2
2,323,432	+				+0.5
2,323,432	+				+0.0
2,323,432	+				+0.2
2,323,433	-				-0.1
2,323,433	-				-1.4
2,323,433	-				+0.4
2,323,433	-				-2.5
2,323,433	-				+0.7
2,323,433	-				-0.6
2,323,563	+		Psyr_2002	0.13	-0.2
2,323,856	-				+1.4
2,323,886	+				-0.3
2,323,886	+				+0.1
2,323,887	-				+0.4
2,323,887	-				+1.4
2,323,981	+		Psyr_2003	0.20	-0.5
2,323,981	+		Psyr_2003	0.20	-0.5
2,323,982	-		Psyr_2003	0.20	+0.0
2,323,990	+		Psyr_2003	0.22	+1.2
2,323,991	-		Psyr_2003	0.22	-1.0
2,323,999	-		Psyr_2003	0.23	+0.1
2,324,021	+		Psyr_2003	0.27	-0.3
2,324,021	+		Psyr_2003	0.27	+0.5
2,324,021	+		Psyr_2003	0.27	+0.7
2,324,128	+		Psyr_2003	0.45	+1.0
2,324,128	+		Psyr_2003	0.45	-1.3
2,324,129	-		Psyr_2003	0.45	+2.1
2,324,142	+		Psyr_2003	0.47	+1.2
2,324,143	-		Psyr_2003	0.47	+0.7
2,324,242	+		Psyr_2003	0.64	-0.7
2,324,242	+		Psyr_2003	0.64	+0.3
2,324,242	+		Psyr_2003	0.64	+0.7
2,324,242	+		Psyr_2003	0.64	-1.4
2,324,242	+		Psyr_2003	0.64	+0.3
2,324,242	+		Psyr_2003	0.64	-0.0
2,324,242	+		Psyr_2003	0.64	+2.2
2,324,242	+		Psyr_2003	0.64	-0.2
2,324,242	+		Psyr_2003	0.64	+1.5
2,324,242	+		Psyr_2003	0.64	-0.6
2,324,242	+		Psyr_2003	0.64	+0.6
2,324,243	-		Psyr_2003	0.64	+1.3
2,324,243	-		Psyr_2003	0.64	+0.8
2,324,243	-		Psyr_2003	0.64	-1.4
2,324,243	-		Psyr_2003	0.64	+0.4
2,324,243	-		Psyr_2003	0.64	-0.2
2,324,243	-		Psyr_2003	0.64	+0.6
2,324,243	-		Psyr_2003	0.64	+0.3
2,324,243	-		Psyr_2003	0.64	-0.3
2,324,243	-		Psyr_2003	0.64	-0.7
2,324,243	-		Psyr_2003	0.64	-0.3
2,324,243	-		Psyr_2003	0.64	+2.0
2,324,263	+		Psyr_2003	0.68	-0.6
2,324,263	+		Psyr_2003	0.68	+0.9
2,324,264	-		Psyr_2003	0.68	-0.2
2,324,264	-		Psyr_2003	0.68	-1.6
2,324,335	+		Psyr_2003	0.80	+2.2
2,324,412	+				+0.1
2,324,412	+				+1.1
2,324,412	+				+1.4
2,324,413	-				+0.1
2,324,475	+				-0.4
2,324,522	+				-0.2
2,324,523	-				+3.0