Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1990

Experiment: KB with Nalidixic 12.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Nalidixic 12.5 ug/ml
2,309,719	+		Psyr_1989	0.55	+0.7
2,309,720	-		Psyr_1989	0.55	-0.2
2,309,761	+		Psyr_1989	0.58	-1.7
2,309,761	+		Psyr_1989	0.58	-2.7
2,309,762	-		Psyr_1989	0.59	-1.4
2,309,762	-		Psyr_1989	0.59	-1.2
2,309,762	-		Psyr_1989	0.59	+0.8
2,309,762	-		Psyr_1989	0.59	-1.0
2,309,762	-		Psyr_1989	0.59	-0.6
2,309,762	-		Psyr_1989	0.59	-1.7
2,309,762	-		Psyr_1989	0.59	-2.5
2,309,762	-		Psyr_1989	0.59	+1.1
2,309,864	-		Psyr_1989	0.67	-2.3
2,309,944	+		Psyr_1989	0.74	+0.8
2,310,022	+		Psyr_1989	0.80	-0.5
2,310,023	-		Psyr_1989	0.80	-0.9
2,310,088	+		Psyr_1989	0.86	+1.4
2,310,089	-		Psyr_1989	0.86	+1.4
2,310,178	+				+1.4
2,310,178	+				+1.0
2,310,178	+				+3.6
2,310,178	+				+1.2
2,310,178	+				-0.5
2,310,179	-				-0.6
2,310,179	-				+1.4
2,310,179	-				-0.2
2,310,260	-				+2.4
2,310,260	-				+1.7
2,310,310	+				-1.4
2,310,311	-				+1.6
2,310,311	-				+0.8
2,310,311	-				-0.2
2,310,311	-				-0.2
2,310,314	+				-0.3
2,310,314	+				+0.3
2,310,314	+				+0.1
2,310,314	+				+0.3
2,310,314	+				+1.4
2,310,314	+				-1.3
2,310,314	+				+0.1
2,310,314	+				-2.0
2,310,314	+				-0.3
2,310,314	+				+1.2
2,310,314	+				+1.0
2,310,314	+				+0.8
2,310,314	+				+0.3
2,310,314	+				+0.4
2,310,314	+				+1.4
2,310,314	+				-1.4
2,310,314	+				+1.2
2,310,314	+				-1.0
2,310,314	+				+0.4
2,310,314	+				+0.4
2,310,314	+				+1.1
2,310,314	+				+0.2
2,310,314	+				+0.1
2,310,315	-				+0.0
2,310,315	-				+0.3
2,310,315	-				-0.0
2,310,315	-				-0.4
2,310,315	-				-0.6
2,310,315	-				-0.6
2,310,315	-				-1.2
2,310,315	-				+2.0
2,310,315	-				+1.4
2,310,315	-				-2.4
2,310,315	-				+0.4
2,310,315	-				+1.2
2,310,315	-				+0.4
2,310,315	-				-1.6
2,310,315	-				+0.6
2,310,315	-				+0.0
2,310,315	-				-1.7
2,310,315	-				+1.1
2,310,453	-				+0.5
2,310,487	+				-0.6
2,310,487	+				-0.2
2,310,487	+				-1.6
2,310,488	-				+2.0
2,310,488	-				+0.6
2,310,488	-				+0.7
2,310,488	-				-0.6
2,310,488	-				+0.4
2,310,541	+				+0.4
2,310,541	+				+0.4
2,310,542	-				-0.2
2,310,551	+				-0.3
2,310,552	-				+0.4
2,310,564	-				-0.8
2,310,580	+				+0.1
2,310,581	-				-1.3
2,310,581	-				+0.8
2,310,581	-				+1.4
2,310,603	-				+1.4
2,310,688	-				-0.1
2,310,688	-				+0.3
2,310,792	+		Psyr_1990	0.16	+1.4
2,310,793	-		Psyr_1990	0.16	+0.3
2,310,793	-		Psyr_1990	0.16	+1.0
2,310,853	-		Psyr_1990	0.20	-0.6
2,310,928	+		Psyr_1990	0.26	+0.8
2,311,035	+		Psyr_1990	0.34	+0.4
2,311,035	+		Psyr_1990	0.34	+1.6
2,311,036	-		Psyr_1990	0.34	+1.1
2,311,036	-		Psyr_1990	0.34	-0.5
2,311,036	-		Psyr_1990	0.34	+1.7
2,311,036	-		Psyr_1990	0.34	+1.0
2,311,036	-		Psyr_1990	0.34	-1.6
2,311,037	+		Psyr_1990	0.34	-0.2
2,311,037	+		Psyr_1990	0.34	+0.8
2,311,037	+		Psyr_1990	0.34	+2.0
2,311,037	+		Psyr_1990	0.34	+1.2
2,311,038	-		Psyr_1990	0.34	+0.8
2,311,038	-		Psyr_1990	0.34	-1.0
2,311,165	-		Psyr_1990	0.44	+0.4
2,311,174	-		Psyr_1990	0.45	-0.0
2,311,338	+		Psyr_1990	0.57	+1.9
2,311,338	+		Psyr_1990	0.57	-0.8
2,311,338	+		Psyr_1990	0.57	+0.1
2,311,338	+		Psyr_1990	0.57	+0.3
2,311,339	-		Psyr_1990	0.57	-1.8
2,311,339	-		Psyr_1990	0.57	-3.2
2,311,339	-		Psyr_1990	0.57	-0.9
2,311,339	-		Psyr_1990	0.57	-0.2
2,311,339	-		Psyr_1990	0.57	-0.9
2,311,398	+		Psyr_1990	0.62	+1.8
2,311,399	-		Psyr_1990	0.62	-0.4
2,311,399	-		Psyr_1990	0.62	+1.2
2,311,531	+		Psyr_1990	0.72	+0.9
2,311,532	-		Psyr_1990	0.72	-2.4
2,311,818	-				+0.2
2,311,818	-				-2.3
2,311,818	-				-2.4
2,311,818	-				+0.3
2,311,821	+				-0.4
2,311,821	+				-0.1
2,311,821	+				-0.9
2,311,821	+				+0.3
2,311,821	+				+0.4
2,311,821	+				-0.4
2,311,821	+				-0.3
2,311,821	+				+0.4
2,311,822	-				-0.8
2,311,822	-				+1.4
2,311,822	-				-0.2
2,311,822	-				+1.4
2,311,822	-				-0.6
2,311,822	-				+0.4
2,311,822	-				-1.0
2,311,822	-				-0.9
2,311,822	-				+0.4
2,311,822	-				+0.4
2,311,822	-				+1.4
2,311,822	-				+1.2
2,311,825	+				-1.6
2,311,825	+				+1.4
2,311,825	+				+0.4
2,311,857	+				-0.6
2,311,857	+				+0.6
2,311,857	+				-0.3
2,311,857	+				-0.2
2,311,858	-				-0.0
2,311,858	-				-1.4
2,311,858	-				+0.1
2,311,858	-				+0.5
2,311,858	-				-2.0
2,311,858	-				+0.1
2,311,858	-				+1.2
2,311,984	-				-1.6
2,312,136	+		Psyr_1991	0.20	-1.7
2,312,281	+		Psyr_1991	0.37	+1.1
2,312,578	+		Psyr_1991	0.74	-0.2
2,312,578	+		Psyr_1991	0.74	+0.4
2,312,578	+		Psyr_1991	0.74	-1.6
2,312,578	+		Psyr_1991	0.74	-0.2
2,312,578	+		Psyr_1991	0.74	+1.7
2,312,578	+		Psyr_1991	0.74	-0.1
2,312,578	+		Psyr_1991	0.74	+1.2
2,312,579	-		Psyr_1991	0.74	+0.1
2,312,579	-		Psyr_1991	0.74	-2.8
2,312,579	-		Psyr_1991	0.74	-1.2
2,312,579	-		Psyr_1991	0.74	+1.1
2,312,579	-		Psyr_1991	0.74	-1.0
2,312,579	-		Psyr_1991	0.74	-0.6
2,312,579	-		Psyr_1991	0.74	+0.4
2,312,582	+		Psyr_1991	0.75	+1.4
2,312,582	+		Psyr_1991	0.75	-0.2
2,312,582	+		Psyr_1991	0.75	-0.9
2,312,582	+		Psyr_1991	0.75	+1.4
2,312,582	+		Psyr_1991	0.75	+1.4
2,312,582	+		Psyr_1991	0.75	+0.4
2,312,582	+		Psyr_1991	0.75	+1.1
2,312,582	+		Psyr_1991	0.75	+1.6
2,312,582	+		Psyr_1991	0.75	-1.2
2,312,582	+		Psyr_1991	0.75	+1.4
2,312,582	+		Psyr_1991	0.75	-1.4
2,312,583	-		Psyr_1991	0.75	-0.4
2,312,583	-		Psyr_1991	0.75	-0.6
2,312,583	-		Psyr_1991	0.75	-1.4
2,312,583	-		Psyr_1991	0.75	-1.7
2,312,583	-		Psyr_1991	0.75	+0.6
2,312,583	-		Psyr_1991	0.75	-1.2
2,312,704	+		Psyr_1991	0.90	-0.2
2,312,704	+		Psyr_1991	0.90	-0.2
2,312,705	-		Psyr_1991	0.90	-0.4
2,312,705	-		Psyr_1991	0.90	+0.8
2,312,867	-				+0.2