Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1959

Experiment: KB with Nalidixic 12.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Nalidixic 12.5 ug/ml
2,251,825	-		Psyr_1958	0.88	-0.6
2,252,137	-				+0.7
2,252,325	-				+0.2
2,252,356	-				-0.9
2,252,356	-				+1.4
2,252,356	-				-0.9
2,253,006	-				+0.1
2,253,209	+				+1.4
2,253,225	+				+0.5
2,253,225	+				+0.4
2,253,225	+				+0.3
2,253,226	-				+1.4
2,253,300	+				-0.6
2,253,300	+				+0.8
2,253,300	+				+0.8
2,253,300	+				+1.4
2,253,301	-				-0.2
2,253,301	-				+0.6
2,253,301	-				-0.6
2,253,301	-				-1.8
2,253,377	+				+3.4
2,253,575	+		Psyr_1959	0.12	+0.1
2,253,575	+		Psyr_1959	0.12	-0.2
2,253,723	+		Psyr_1959	0.14	+0.8
2,253,724	-		Psyr_1959	0.14	+0.9
2,253,724	-		Psyr_1959	0.14	-0.3
2,253,724	-		Psyr_1959	0.14	-0.4
2,254,115	+		Psyr_1959	0.20	-0.2
2,254,116	-		Psyr_1959	0.20	+1.4
2,254,211	-		Psyr_1959	0.22	+0.4
2,254,734	-		Psyr_1959	0.30	+0.1
2,254,743	-		Psyr_1959	0.30	-0.1
2,254,743	-		Psyr_1959	0.30	+0.3
2,254,743	-		Psyr_1959	0.30	-0.8
2,255,486	+		Psyr_1959	0.41	-0.2
2,255,487	-		Psyr_1959	0.41	+0.4
2,255,706	-		Psyr_1959	0.45	-0.7
2,256,161	+		Psyr_1959	0.52	-0.9
2,256,161	+		Psyr_1959	0.52	-1.8
2,256,162	-		Psyr_1959	0.52	+2.6
2,256,162	-		Psyr_1959	0.52	-1.0
2,256,162	-		Psyr_1959	0.52	+1.0
2,257,685	+		Psyr_1959	0.75	-0.2
2,257,685	+		Psyr_1959	0.75	-1.8
2,257,686	-		Psyr_1959	0.75	-0.0
2,257,686	-		Psyr_1959	0.75	+0.8
2,257,686	-		Psyr_1959	0.75	-0.6
2,257,728	-		Psyr_1959	0.76	+1.1
2,257,728	-		Psyr_1959	0.76	-1.3
2,257,851	-		Psyr_1959	0.78	+0.2
2,257,898	+		Psyr_1959	0.79	+0.2
2,257,899	-		Psyr_1959	0.79	+0.1
2,257,908	-		Psyr_1959	0.79	+0.2
2,258,251	-		Psyr_1959	0.84	-0.4
2,258,251	-		Psyr_1959	0.84	+1.4
2,258,321	+		Psyr_1959	0.85	-0.5
2,258,330	+		Psyr_1959	0.85	+0.1
2,258,486	+		Psyr_1959	0.88	-0.2
2,258,486	+		Psyr_1959	0.88	+1.6
2,258,487	-		Psyr_1959	0.88	-1.9
2,258,591	+		Psyr_1959	0.89	+0.6
2,258,787	-				+0.7
2,258,861	+				+0.5
2,258,973	-				-0.6
2,259,420	-				-1.6
2,259,432	+				+1.1
2,259,615	+				-0.9
2,259,615	+				-1.9
2,259,778	+				-0.6
2,259,779	-				+0.1
2,259,779	-				+1.0