Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1923

Experiment: KB with Nalidixic 12.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Nalidixic 12.5 ug/ml
2,195,219	+				+0.7
2,195,219	+				-1.6
2,195,220	-				-0.3
2,195,292	-				+0.3
2,195,292	-				+0.7
2,195,292	-				-0.1
2,195,445	+		Psyr_1922	0.22	-1.0
2,195,445	+		Psyr_1922	0.22	+0.7
2,195,446	-		Psyr_1922	0.22	-1.0
2,195,480	+		Psyr_1922	0.26	-0.5
2,195,533	+		Psyr_1922	0.32	-1.0
2,195,609	-		Psyr_1922	0.40	-0.2
2,195,610	+		Psyr_1922	0.40	-1.3
2,195,610	+		Psyr_1922	0.40	-2.1
2,195,610	+		Psyr_1922	0.40	+0.3
2,195,610	+		Psyr_1922	0.40	+1.3
2,195,611	-		Psyr_1922	0.40	-0.6
2,195,611	-		Psyr_1922	0.40	-3.0
2,195,611	-		Psyr_1922	0.40	-0.6
2,195,611	-		Psyr_1922	0.40	-1.3
2,195,675	+		Psyr_1922	0.47	+0.6
2,195,675	+		Psyr_1922	0.47	-0.9
2,195,676	-		Psyr_1922	0.47	-1.4
2,195,676	-		Psyr_1922	0.47	-1.5
2,195,676	-		Psyr_1922	0.47	-1.9
2,195,693	+		Psyr_1922	0.49	+0.4
2,195,694	-		Psyr_1922	0.49	-0.1
2,195,717	-		Psyr_1922	0.52	-2.9
2,195,777	+		Psyr_1922	0.58	-0.4
2,195,777	+		Psyr_1922	0.58	-2.0
2,195,777	+		Psyr_1922	0.58	-0.7
2,195,777	+		Psyr_1922	0.58	-0.0
2,195,777	+		Psyr_1922	0.58	-1.7
2,195,777	+		Psyr_1922	0.58	-0.1
2,195,777	+		Psyr_1922	0.58	+1.0
2,195,777	+		Psyr_1922	0.58	+0.0
2,195,778	-		Psyr_1922	0.58	-1.4
2,195,778	-		Psyr_1922	0.58	-0.3
2,195,778	-		Psyr_1922	0.58	-0.8
2,195,885	+		Psyr_1922	0.70	-0.9
2,195,885	+		Psyr_1922	0.70	-0.7
2,195,885	+		Psyr_1922	0.70	-1.8
2,195,886	-		Psyr_1922	0.70	-1.0
2,195,950	+		Psyr_1922	0.77	-0.8
2,195,950	+		Psyr_1922	0.77	-0.4
2,195,951	-		Psyr_1922	0.77	-0.3
2,196,036	-		Psyr_1922	0.86	-1.2
2,196,065	+		Psyr_1922	0.89	+0.4
2,196,065	+		Psyr_1922	0.89	+1.0
2,196,065	+		Psyr_1922	0.89	+1.0
2,196,065	+		Psyr_1922	0.89	+0.3
2,196,065	+		Psyr_1922	0.89	-0.7
2,196,066	-		Psyr_1922	0.89	-1.2
2,196,066	-		Psyr_1922	0.89	-0.3
2,196,066	-		Psyr_1922	0.89	-1.6
2,196,066	-		Psyr_1922	0.89	-1.5
2,196,066	-		Psyr_1922	0.89	-2.2
2,196,066	-		Psyr_1922	0.89	-1.5
2,196,066	-		Psyr_1922	0.89	-1.8
2,196,066	-		Psyr_1922	0.89	-2.4
2,196,066	-		Psyr_1922	0.89	+0.5
2,196,066	-		Psyr_1922	0.89	-1.0
2,196,066	-				-0.3
2,196,066	-		Psyr_1922	0.89	-2.6
2,196,068	+		Psyr_1922	0.89	+1.3
2,196,068	+		Psyr_1922	0.89	-0.0
2,196,068	+		Psyr_1922	0.89	+0.1
2,196,069	-		Psyr_1922	0.89	-0.0
2,196,085	+				-0.1
2,196,085	+				+0.6
2,196,085	+				+0.4
2,196,086	-				-1.2
2,196,086	-				+0.9
2,196,100	+				+0.3
2,196,100	+				+0.7
2,196,100	+				-0.9
2,196,101	-				-2.5
2,196,101	-				-0.4
2,196,101	-				+0.7
2,196,104	+				-2.3
2,196,104	+				+1.0
2,196,104	+				+2.3
2,196,245	+				-1.7
2,196,245	+				-1.2
2,196,245	+				-1.3
2,196,245	+				-2.0
2,196,246	-				-0.2
2,196,246	-				-0.2
2,196,246	-				-0.5
2,196,246	-				+0.3
2,196,246	-				+0.8
2,196,295	+				+0.3
2,196,296	-				-1.2
2,196,304	+				+0.7
2,196,304	+				+1.3
2,196,304	+				-1.8
2,196,405	+		Psyr_1923	0.16	+0.4
2,196,405	+		Psyr_1923	0.16	-1.0
2,196,405	+		Psyr_1923	0.16	-0.7
2,196,405	+		Psyr_1923	0.16	+0.3
2,196,406	-		Psyr_1923	0.16	-0.4
2,196,406	-		Psyr_1923	0.16	+1.3
2,196,459	+		Psyr_1923	0.20	-2.4
2,196,505	-		Psyr_1923	0.24	-1.6
2,196,505	-		Psyr_1923	0.24	+0.8
2,196,522	+		Psyr_1923	0.25	-0.7
2,196,522	+		Psyr_1923	0.25	-1.2
2,196,523	-		Psyr_1923	0.26	-0.3
2,196,540	+		Psyr_1923	0.27	-1.7
2,196,540	+		Psyr_1923	0.27	+0.1
2,196,540	+		Psyr_1923	0.27	-1.9
2,196,540	+		Psyr_1923	0.27	-1.6
2,196,595	-		Psyr_1923	0.31	-0.6
2,196,595	-		Psyr_1923	0.31	+1.3
2,196,604	+		Psyr_1923	0.32	-0.0
2,196,604	+		Psyr_1923	0.32	-1.0
2,196,605	-		Psyr_1923	0.32	-0.4
2,196,605	-		Psyr_1923	0.32	+0.5
2,196,605	-		Psyr_1923	0.32	+0.7
2,196,605	-		Psyr_1923	0.32	-1.2
2,196,605	-		Psyr_1923	0.32	+1.3
2,196,638	+		Psyr_1923	0.35	+1.6
2,196,638	+		Psyr_1923	0.35	-2.2
2,196,640	+		Psyr_1923	0.35	-0.3
2,196,640	+				-1.0
2,196,641	-		Psyr_1923	0.35	-1.0
2,196,641	-		Psyr_1923	0.35	+0.1
2,196,771	+		Psyr_1923	0.46	-0.1
2,196,771	+		Psyr_1923	0.46	-0.3
2,196,771	+		Psyr_1923	0.46	-0.0
2,196,771	+		Psyr_1923	0.46	+0.3
2,196,771	+		Psyr_1923	0.46	-2.0
2,196,771	+		Psyr_1923	0.46	-1.5
2,196,772	-		Psyr_1923	0.46	-2.7
2,196,772	-		Psyr_1923	0.46	-0.7
2,196,772	-		Psyr_1923	0.46	-1.5
2,196,773	+		Psyr_1923	0.46	+1.3
2,196,774	-		Psyr_1923	0.46	-1.0
2,196,774	-		Psyr_1923	0.46	-0.8
2,196,774	-		Psyr_1923	0.46	-0.1
2,196,774	-		Psyr_1923	0.46	-1.1
2,196,774	-		Psyr_1923	0.46	-1.5
2,196,774	-		Psyr_1923	0.46	+0.3
2,196,871	+		Psyr_1923	0.54	-0.3
2,196,934	+		Psyr_1923	0.59	+0.5
2,196,935	-		Psyr_1923	0.59	-1.7
2,196,938	+		Psyr_1923	0.59	+0.7
2,196,938	+		Psyr_1923	0.59	-0.7
2,196,938	+		Psyr_1923	0.59	-0.0
2,196,938	+		Psyr_1923	0.59	+1.6
2,196,938	+		Psyr_1923	0.59	-0.4
2,196,938	+		Psyr_1923	0.59	-0.1
2,196,939	-		Psyr_1923	0.60	-2.2
2,196,939	-		Psyr_1923	0.60	-2.4
2,196,939	-		Psyr_1923	0.60	+1.3
2,196,939	-		Psyr_1923	0.60	+0.4
2,196,939	-		Psyr_1923	0.60	-0.7
2,196,939	-		Psyr_1923	0.60	-1.3
2,197,052	+		Psyr_1923	0.69	+2.6
2,197,053	-		Psyr_1923	0.69	+1.0
2,197,057	+		Psyr_1923	0.69	+1.0
2,197,094	-		Psyr_1923	0.72	+0.0
2,197,185	-		Psyr_1923	0.80	-2.1
2,197,226	+		Psyr_1923	0.83	-1.3
2,197,279	+		Psyr_1923	0.87	+0.8
2,197,331	-				-2.2
2,197,381	-				-0.6
2,197,383	-				+1.3
2,197,386	+				+0.1
2,197,386	+				+0.3
2,197,386	+				+0.4
2,197,386	+				-0.9
2,197,386	+				-0.3
2,197,386	+				-1.0
2,197,387	-				-1.7
2,197,387	-				-2.3
2,197,461	+				-1.2
2,197,461	+				-0.7
2,197,469	+				+1.3
2,197,469	+				-0.5
2,197,470	-				-0.7
2,197,526	-		Psyr_1924	0.18	-0.3
2,197,526	-		Psyr_1924	0.18	-0.6
2,197,526	-		Psyr_1924	0.18	-2.9
2,197,526	-		Psyr_1924	0.18	-2.7
2,197,526	-		Psyr_1924	0.18	-1.2
2,197,539	-		Psyr_1924	0.20	-0.4
2,197,600	+		Psyr_1924	0.29	-0.6
2,197,800	+		Psyr_1924	0.59	-1.0
2,197,855	+		Psyr_1924	0.68	-1.3
2,197,884	+		Psyr_1924	0.72	+1.9
2,197,885	-		Psyr_1924	0.72	-0.8
2,197,902	-		Psyr_1924	0.75	+0.3
2,197,977	+		Psyr_1924	0.86	+0.9
2,197,978	-		Psyr_1924	0.86	-0.7
2,197,978	-		Psyr_1924	0.86	-0.5
2,198,047	+				+2.3
2,198,047	+				+0.3
2,198,047	+				+0.7
2,198,047	+				-1.7
2,198,048	-				-0.3
2,198,048	-				-1.3
2,198,048	-				-0.0
2,198,048	-				-1.7
2,198,066	-				+2.3
2,198,070	+				+1.0
2,198,118	+				-1.5
2,198,118	+				-0.4
2,198,119	-				-0.2
2,198,119	-				-2.0
2,198,253	+		Psyr_1925	0.12	-2.6
2,198,253	+		Psyr_1925	0.12	-2.8
2,198,253	+		Psyr_1925	0.12	-0.9
2,198,295	+		Psyr_1925	0.15	-3.6
2,198,296	-		Psyr_1925	0.16	+0.3
2,198,296	-		Psyr_1925	0.16	-2.0
2,198,296	-		Psyr_1925	0.16	+0.3
2,198,297	+		Psyr_1925	0.16	+0.7
2,198,297	+		Psyr_1925	0.16	+0.9
2,198,298	-		Psyr_1925	0.16	-2.7
2,198,378	+		Psyr_1925	0.22	-3.0
2,198,404	-		Psyr_1925	0.24	+0.3
2,198,404	-		Psyr_1925	0.24	-1.0
2,198,404	-		Psyr_1925	0.24	-1.9
2,198,404	-		Psyr_1925	0.24	-0.3