Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1893

Experiment: KB with Nalidixic 12.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Nalidixic 12.5 ug/ml
2,162,221	+				+2.6
2,162,222	-				+0.3
2,162,222	-				+0.9
2,162,222	-				+1.0
2,162,528	+		Psyr_1892	0.47	-0.1
2,162,528	+		Psyr_1892	0.47	-0.4
2,162,528	+		Psyr_1892	0.47	+0.9
2,162,528	+		Psyr_1892	0.47	-0.9
2,162,528	+		Psyr_1892	0.47	+1.3
2,162,528	+		Psyr_1892	0.47	+0.6
2,162,529	-		Psyr_1892	0.47	+0.9
2,162,529	-		Psyr_1892	0.47	+0.3
2,162,529	-		Psyr_1892	0.47	+1.6
2,162,529	-		Psyr_1892	0.47	+0.2
2,162,806	+		Psyr_1892	0.84	-0.6
2,162,806	+		Psyr_1892	0.84	+1.2
2,162,806	+		Psyr_1892	0.84	+1.3
2,162,806	+		Psyr_1892	0.84	+0.4
2,162,806	+		Psyr_1892	0.84	-1.3
2,162,810	+		Psyr_1892	0.85	+1.1
2,162,810	+		Psyr_1892	0.85	-0.7
2,162,892	+				-1.5
2,162,893	-				+1.9
2,162,909	+				+1.0
2,162,909	+				+0.8
2,162,910	-				-0.7
2,162,910	-				+0.3
2,162,910	-				-1.7
2,162,986	+				-1.0
2,163,141	+		Psyr_1893	0.18	-0.0
2,163,141	+		Psyr_1893	0.18	-1.0
2,163,141	+		Psyr_1893	0.18	+1.0
2,163,141	+		Psyr_1893	0.18	-0.0
2,163,141	+		Psyr_1893	0.18	+1.2
2,163,142	-		Psyr_1893	0.18	-1.0
2,163,142	-		Psyr_1893	0.18	+0.2
2,163,142	-		Psyr_1893	0.18	+0.7
2,163,142	-		Psyr_1893	0.18	-0.3
2,163,142	-		Psyr_1893	0.18	-2.0
2,163,142	-		Psyr_1893	0.18	+1.8
2,163,142	-		Psyr_1893	0.18	+0.7
2,163,142	-		Psyr_1893	0.18	+0.6
2,163,142	-		Psyr_1893	0.18	+0.8
2,163,466	+		Psyr_1893	0.75	+0.1
2,163,467	-		Psyr_1893	0.76	-0.3
2,163,551	+				-0.3
2,163,551	+				-0.7
2,163,619	+				-0.3
2,163,619	+				-0.6
2,163,619	+				-0.3
2,163,620	-				-1.1
2,163,796	+				+1.3
2,163,796	+				-0.8
2,163,796	+				+0.2
2,163,797	-				+0.6
2,163,797	-				-0.7
2,163,797	-				-0.8
2,164,263	+				+3.6
2,164,263	+		Psyr_1894	0.23	-0.3
2,164,264	-		Psyr_1894	0.24	-0.1
2,164,324	+		Psyr_1894	0.26	+0.1
2,164,409	+		Psyr_1894	0.29	-0.5
2,164,410	-		Psyr_1894	0.29	+1.0
2,164,410	-		Psyr_1894	0.29	-0.3
2,164,492	+		Psyr_1894	0.32	-1.2