Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1880

Experiment: KB with Nalidixic 12.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Nalidixic 12.5 ug/ml
2,151,767	+		Psyr_1877	0.41	+0.4
2,151,768	-		Psyr_1877	0.42	-0.9
2,151,768	-		Psyr_1877	0.42	-0.3
2,151,799	+		Psyr_1877	0.51	+0.4
2,151,799	+		Psyr_1877	0.51	-2.2
2,151,799	+		Psyr_1877	0.51	-0.1
2,151,799	+		Psyr_1877	0.51	-2.4
2,151,799	+		Psyr_1877	0.51	+0.1
2,151,799	+		Psyr_1877	0.51	+1.3
2,151,799	+		Psyr_1877	0.51	-0.3
2,151,799	+		Psyr_1877	0.51	+0.1
2,151,799	+		Psyr_1877	0.51	-0.7
2,151,799	+		Psyr_1877	0.51	+1.3
2,151,799	+		Psyr_1877	0.51	-0.3
2,151,800	-		Psyr_1877	0.51	-0.7
2,151,800	-		Psyr_1877	0.51	+0.3
2,151,800	-		Psyr_1877	0.51	-0.1
2,151,800	-		Psyr_1877	0.51	-1.0
2,151,800	-		Psyr_1877	0.51	-0.7
2,151,800	-		Psyr_1877	0.51	+0.5
2,151,800	-		Psyr_1877	0.51	+1.3
2,151,800	-		Psyr_1877	0.51	+0.1
2,151,800	-		Psyr_1877	0.51	-0.2
2,151,801	+		Psyr_1877	0.52	+0.0
2,151,801	+		Psyr_1877	0.52	-0.2
2,151,801	+		Psyr_1877	0.52	-0.6
2,151,802	-		Psyr_1877	0.52	-0.7
2,151,802	-		Psyr_1877	0.52	-1.3
2,151,802	-		Psyr_1877	0.52	-0.6
2,151,803	+		Psyr_1877	0.52	+1.5
2,151,803	+		Psyr_1877	0.52	-0.7
2,151,803	+		Psyr_1877	0.52	-0.6
2,151,803	+		Psyr_1877	0.52	-0.5
2,151,803	+		Psyr_1877	0.52	-0.3
2,151,804	-		Psyr_1877	0.52	-1.1
2,151,804	-		Psyr_1877	0.52	-2.8
2,151,804	-		Psyr_1877	0.52	-0.1
2,151,804	-		Psyr_1877	0.52	-0.6
2,151,804	-		Psyr_1877	0.52	+0.3
2,151,820	+		Psyr_1877	0.57	-1.1
2,151,821	-		Psyr_1877	0.58	-0.9
2,151,821	-		Psyr_1877	0.58	+0.4
2,151,821	-		Psyr_1877	0.58	-0.3
2,151,895	+		Psyr_1877	0.80	+0.0
2,151,896	-		Psyr_1877	0.80	-1.5
2,151,896	-		Psyr_1877	0.80	-0.9
2,151,896	-		Psyr_1877	0.80	-1.3
2,151,896	-		Psyr_1877	0.80	-0.2
2,151,896	-		Psyr_1877	0.80	-0.9
2,151,958	+				+0.3
2,151,958	+				+0.1
2,151,958	+				-0.2
2,151,958	+				-0.3
2,151,958	+				-2.0
2,151,958	+				-2.3
2,151,959	-				-1.6
2,151,959	-				-0.7
2,151,959	-				+0.2
2,151,959	-				-2.3
2,152,104	+		Psyr_1878	0.34	-0.1
2,152,105	-		Psyr_1878	0.34	-2.1
2,152,105	-		Psyr_1878	0.34	+0.6
2,152,156	-		Psyr_1878	0.46	+0.5
2,152,188	+		Psyr_1878	0.54	-2.3
2,152,188	+		Psyr_1878	0.54	+0.3
2,152,189	-		Psyr_1878	0.54	+0.6
2,152,189	-		Psyr_1878	0.54	-1.3
2,152,218	+		Psyr_1878	0.61	+0.5
2,152,218	+		Psyr_1878	0.61	-0.7
2,152,218	+		Psyr_1878	0.61	-0.1
2,152,218	+		Psyr_1878	0.61	-0.7
2,152,218	+		Psyr_1878	0.61	-0.4
2,152,218	+		Psyr_1878	0.61	-2.1
2,152,218	+		Psyr_1878	0.61	-0.7
2,152,218	+		Psyr_1878	0.61	-0.9
2,152,219	-		Psyr_1878	0.61	+0.4
2,152,219	-		Psyr_1878	0.61	-0.1
2,152,219	-		Psyr_1878	0.61	-1.8
2,152,219	-		Psyr_1878	0.61	-3.0
2,152,219	-		Psyr_1878	0.61	-0.4
2,152,278	+		Psyr_1878	0.75	-0.3
2,152,278	+		Psyr_1878	0.75	-1.5
2,152,278	+		Psyr_1878	0.75	-3.0
2,152,279	-		Psyr_1878	0.75	-2.4
2,152,279	-		Psyr_1878	0.75	+0.3
2,152,279	-		Psyr_1878	0.75	-1.3
2,152,314	-		Psyr_1878	0.84	-1.9
2,152,314	-		Psyr_1878	0.84	+0.0
2,152,324	-		Psyr_1878	0.86	-2.2
2,152,408	+				-0.7
2,152,498	+				+1.3
2,152,498	+				+0.6
2,152,530	+				+3.1
2,152,531	-				+0.1
2,152,699	+				+0.3
2,152,699	+				+2.9
2,152,699	+				+0.9
2,152,699	+				+0.9
2,152,700	-				+0.7
2,152,700	-				-1.3
2,152,700	-				+1.7
2,152,700	-				-0.7
2,152,700	-				-0.8
2,152,764	+				+0.5
2,152,765	-				+1.4
2,152,765	-				+1.3
2,152,767	+				-2.3
2,152,767	+				-0.2
2,152,767	+				-1.5
2,152,767	+				+0.5
2,152,767	+				+0.9
2,152,768	-				+0.3
2,152,768	-				-1.2
2,152,768	-				+0.0
2,152,768	-				+0.3
2,152,768	-				-0.7
2,152,768	-				+1.3
2,152,768	-				+0.6
2,152,785	+				-1.1
2,152,785	+				-2.9
2,152,786	-				+0.4
2,152,786	-				+0.2
2,152,786	-				-0.9
2,152,850	+		Psyr_1880	0.23	+1.5
2,152,851	-		Psyr_1880	0.23	+3.6
2,152,875	+		Psyr_1880	0.30	-2.6
2,152,875	+		Psyr_1880	0.30	-0.3
2,152,875	+		Psyr_1880	0.30	+1.1
2,152,875	+		Psyr_1880	0.30	+0.3
2,152,875	+		Psyr_1880	0.30	-0.7
2,152,875	+		Psyr_1880	0.30	+2.0
2,152,875	+		Psyr_1880	0.30	+0.1
2,152,875	+		Psyr_1880	0.30	+0.3
2,152,876	-		Psyr_1880	0.30	-1.9
2,152,876	-		Psyr_1880	0.30	-1.1
2,152,876	-		Psyr_1880	0.30	+1.3
2,152,876	-				-0.7
2,152,876	-		Psyr_1880	0.30	-1.7
2,152,876	-		Psyr_1880	0.30	-0.9
2,152,876	-		Psyr_1880	0.30	+0.1
2,152,876	-		Psyr_1880	0.30	-1.1
2,152,876	-		Psyr_1880	0.30	-1.4
2,152,932	+		Psyr_1880	0.45	-2.1
2,152,932	+		Psyr_1880	0.45	+0.3
2,153,166	+				+1.0
2,153,250	+				+1.3
2,153,250	+				-1.7
2,153,251	-				+3.1
2,153,369	-		Psyr_1881	0.32	-0.2
2,153,463	+		Psyr_1881	0.49	-1.4
2,153,463	+		Psyr_1881	0.49	-0.8
2,153,463	+		Psyr_1881	0.49	-0.4
2,153,464	-		Psyr_1881	0.50	-0.3
2,153,464	-		Psyr_1881	0.50	+1.0
2,153,521	+		Psyr_1881	0.60	+3.1
2,153,522	-		Psyr_1881	0.60	-0.2
2,153,641	-		Psyr_1881	0.83	+0.5
2,153,641	-		Psyr_1881	0.83	-0.0
2,153,827	+				+0.5
2,153,827	+				+1.9
2,153,827	+				+1.0
2,153,828	-				-1.7
2,153,828	-				-2.3
2,153,828	-				-0.5
2,153,934	+				-1.9
2,153,935	-				-0.5
2,153,971	+				-0.9
2,154,013	-				-0.2
2,154,084	+		Psyr_1882	0.18	-0.2
2,154,084	+		Psyr_1882	0.18	-1.2
2,154,085	-		Psyr_1882	0.18	-1.0