Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1758

Experiment: KB with Nalidixic 12.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1757 and Psyr_1758 are separated by 2 nucleotidesPsyr_1758 and Psyr_1759 overlap by 4 nucleotides Psyr_1757: Psyr_1757 - Binding-protein-dependent transport systems inner membrane component, at 1,996,428 to 1,997,501 _1757 Psyr_1758: Psyr_1758 - extracellular solute-binding protein, family 5, at 1,997,504 to 1,999,360 _1758 Psyr_1759: Psyr_1759 - extracellular solute-binding protein, family 5, at 1,999,357 to 2,001,186 _1759 Position (kb) 1997 1998 1999 2000Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1996.753 kb on + strand, within Psyr_1757at 1996.753 kb on + strand, within Psyr_1757at 1996.753 kb on + strand, within Psyr_1757at 1996.753 kb on + strand, within Psyr_1757at 1996.753 kb on + strand, within Psyr_1757at 1996.754 kb on - strand, within Psyr_1757at 1996.754 kb on - strand, within Psyr_1757at 1996.858 kb on + strand, within Psyr_1757at 1996.859 kb on - strand, within Psyr_1757at 1996.859 kb on - strand, within Psyr_1757at 1996.866 kb on + strand, within Psyr_1757at 1996.894 kb on + strand, within Psyr_1757at 1996.895 kb on - strand, within Psyr_1757at 1996.937 kb on - strand, within Psyr_1757at 1996.937 kb on - strand, within Psyr_1757at 1997.025 kb on + strand, within Psyr_1757at 1997.026 kb on - strand, within Psyr_1757at 1997.026 kb on - strand, within Psyr_1757at 1997.086 kb on + strand, within Psyr_1757at 1997.086 kb on + strand, within Psyr_1757at 1997.086 kb on + strand, within Psyr_1757at 1997.087 kb on - strand, within Psyr_1757at 1997.087 kb on - strand, within Psyr_1757at 1997.087 kb on - strand, within Psyr_1757at 1997.087 kb on - strand, within Psyr_1757at 1997.087 kb on - strand, within Psyr_1757at 1997.087 kb on - strand, within Psyr_1757at 1997.087 kb on - strand, within Psyr_1757at 1997.200 kb on + strand, within Psyr_1757at 1997.201 kb on - strand, within Psyr_1757at 1997.201 kb on - strand, within Psyr_1757at 1997.201 kb on - strand, within Psyr_1757at 1997.251 kb on + strand, within Psyr_1757at 1997.251 kb on + strand, within Psyr_1757at 1997.252 kb on - strand, within Psyr_1757at 1997.252 kb on - strand, within Psyr_1757at 1997.252 kb on - strand, within Psyr_1757at 1997.252 kb on - strand, within Psyr_1757at 1997.252 kb on - strand, within Psyr_1757at 1997.489 kb on + strandat 1997.489 kb on + strandat 1997.489 kb on + strandat 1997.489 kb on + strandat 1997.490 kb on - strandat 1997.491 kb on + strandat 1997.491 kb on + strandat 1997.491 kb on + strandat 1997.491 kb on + strandat 1997.491 kb on + strandat 1997.492 kb on - strandat 1997.492 kb on - strandat 1997.492 kb on - strandat 1997.688 kb on + strandat 1997.688 kb on + strandat 1997.688 kb on + strandat 1997.689 kb on - strandat 1997.689 kb on - strandat 1997.689 kb on - strandat 1997.851 kb on - strand, within Psyr_1758at 1997.851 kb on - strand, within Psyr_1758at 1997.937 kb on + strand, within Psyr_1758at 1997.937 kb on + strand, within Psyr_1758at 1997.938 kb on - strand, within Psyr_1758at 1997.938 kb on - strand, within Psyr_1758at 1997.938 kb on - strand, within Psyr_1758at 1997.938 kb on - strand, within Psyr_1758at 1998.000 kb on + strand, within Psyr_1758at 1998.001 kb on - strand, within Psyr_1758at 1998.001 kb on - strand, within Psyr_1758at 1998.298 kb on + strand, within Psyr_1758at 1998.582 kb on + strand, within Psyr_1758at 1998.585 kb on + strand, within Psyr_1758at 1998.585 kb on + strand, within Psyr_1758at 1998.585 kb on + strand, within Psyr_1758at 1998.586 kb on - strand, within Psyr_1758at 1998.599 kb on + strand, within Psyr_1758at 1998.599 kb on + strand, within Psyr_1758at 1998.599 kb on + strand, within Psyr_1758at 1998.600 kb on - strand, within Psyr_1758at 1998.600 kb on - strand, within Psyr_1758at 1998.612 kb on + strand, within Psyr_1758at 1998.613 kb on - strand, within Psyr_1758at 1998.613 kb on - strand, within Psyr_1758at 1998.613 kb on - strand, within Psyr_1758at 1998.666 kb on + strand, within Psyr_1758at 1998.667 kb on - strand, within Psyr_1758at 1998.667 kb on - strand, within Psyr_1758at 1998.690 kb on - strand, within Psyr_1758at 1998.705 kb on + strand, within Psyr_1758at 1998.706 kb on - strand, within Psyr_1758at 1998.885 kb on + strand, within Psyr_1758at 1998.885 kb on + strand, within Psyr_1758at 1998.885 kb on + strand, within Psyr_1758at 1998.886 kb on - strand, within Psyr_1758at 1998.897 kb on + strand, within Psyr_1758at 1998.897 kb on + strand, within Psyr_1758at 1998.897 kb on + strand, within Psyr_1758at 1998.897 kb on + strand, within Psyr_1758at 1998.897 kb on + strand, within Psyr_1758at 1998.897 kb on + strand, within Psyr_1758at 1998.897 kb on + strand, within Psyr_1758at 1998.897 kb on + strand, within Psyr_1758at 1998.898 kb on - strand, within Psyr_1758at 1998.898 kb on - strand, within Psyr_1758at 1998.898 kb on - strand, within Psyr_1758at 1998.898 kb on - strand, within Psyr_1758at 1998.898 kb on - strand, within Psyr_1758at 1998.898 kb on - strand, within Psyr_1758at 1998.898 kb on - strand, within Psyr_1758at 1998.898 kb on - strand, within Psyr_1758at 1998.898 kb on - strand, within Psyr_1758at 1998.997 kb on - strand, within Psyr_1758at 1998.997 kb on - strand, within Psyr_1758at 1999.098 kb on + strand, within Psyr_1758at 1999.407 kb on + strandat 1999.409 kb on + strandat 1999.419 kb on + strandat 1999.487 kb on + strandat 1999.487 kb on + strandat 1999.504 kb on + strandat 1999.607 kb on + strand, within Psyr_1759at 1999.649 kb on + strand, within Psyr_1759at 1999.736 kb on + strand, within Psyr_1759at 1999.736 kb on + strand, within Psyr_1759at 1999.736 kb on + strand, within Psyr_1759at 1999.737 kb on - strand, within Psyr_1759at 1999.737 kb on - strand, within Psyr_1759at 1999.737 kb on - strand, within Psyr_1759at 1999.799 kb on + strand, within Psyr_1759at 1999.800 kb on - strand, within Psyr_1759at 1999.800 kb on - strand, within Psyr_1759at 2000.087 kb on + strand, within Psyr_1759at 2000.087 kb on + strand, within Psyr_1759at 2000.087 kb on + strand, within Psyr_1759at 2000.087 kb on + strand, within Psyr_1759at 2000.088 kb on - strand, within Psyr_1759at 2000.088 kb on - strand, within Psyr_1759at 2000.291 kb on + strand, within Psyr_1759at 2000.327 kb on + strand, within Psyr_1759at 2000.327 kb on + strand, within Psyr_1759at 2000.327 kb on + strand, within Psyr_1759at 2000.327 kb on + strand, within Psyr_1759at 2000.327 kb on + strand, within Psyr_1759at 2000.327 kb on + strand, within Psyr_1759at 2000.327 kb on + strand, within Psyr_1759at 2000.327 kb on + strand, within Psyr_1759at 2000.327 kb on + strand, within Psyr_1759at 2000.327 kb on + strand, within Psyr_1759at 2000.328 kb on - strand, within Psyr_1759at 2000.328 kb on - strand, within Psyr_1759at 2000.328 kb on - strand, within Psyr_1759at 2000.328 kb on - strand, within Psyr_1759at 2000.328 kb on - strand, within Psyr_1759at 2000.328 kb on - strand, within Psyr_1759at 2000.328 kb on - strand, within Psyr_1759at 2000.328 kb on - strand, within Psyr_1759

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nalidixic 12.5 ug/ml
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1,996,753 + Psyr_1757 0.30 -0.5
1,996,753 + Psyr_1757 0.30 +0.5
1,996,753 + Psyr_1757 0.30 +1.2
1,996,753 + Psyr_1757 0.30 +0.6
1,996,753 + Psyr_1757 0.30 -0.1
1,996,754 - Psyr_1757 0.30 -0.1
1,996,754 - Psyr_1757 0.30 +0.6
1,996,858 + Psyr_1757 0.40 -0.3
1,996,859 - Psyr_1757 0.40 -0.5
1,996,859 - Psyr_1757 0.40 -0.9
1,996,866 + Psyr_1757 0.41 -1.1
1,996,894 + Psyr_1757 0.43 -0.4
1,996,895 - Psyr_1757 0.43 -1.4
1,996,937 - Psyr_1757 0.47 -0.4
1,996,937 - Psyr_1757 0.47 -0.5
1,997,025 + Psyr_1757 0.56 -0.0
1,997,026 - Psyr_1757 0.56 -2.7
1,997,026 - Psyr_1757 0.56 +0.4
1,997,086 + Psyr_1757 0.61 +3.2
1,997,086 + Psyr_1757 0.61 -1.0
1,997,086 + Psyr_1757 0.61 +1.2
1,997,087 - Psyr_1757 0.61 -1.5
1,997,087 - Psyr_1757 0.61 -1.8
1,997,087 - Psyr_1757 0.61 +1.3
1,997,087 - Psyr_1757 0.61 -0.0
1,997,087 - Psyr_1757 0.61 -0.3
1,997,087 - Psyr_1757 0.61 +0.1
1,997,087 - Psyr_1757 0.61 -1.2
1,997,200 + Psyr_1757 0.72 -2.4
1,997,201 - Psyr_1757 0.72 -1.8
1,997,201 - Psyr_1757 0.72 -1.0
1,997,201 - Psyr_1757 0.72 +0.7
1,997,251 + Psyr_1757 0.77 -2.0
1,997,251 + Psyr_1757 0.77 -1.6
1,997,252 - Psyr_1757 0.77 -0.3
1,997,252 - Psyr_1757 0.77 +0.2
1,997,252 - Psyr_1757 0.77 +0.8
1,997,252 - Psyr_1757 0.77 -1.1
1,997,252 - Psyr_1757 0.77 -1.4
1,997,489 + -0.2
1,997,489 + -0.2
1,997,489 + -0.4
1,997,489 + +0.6
1,997,490 - -0.6
1,997,491 + -0.3
1,997,491 + +0.4
1,997,491 + -0.4
1,997,491 + +0.2
1,997,491 + -1.6
1,997,492 - +1.9
1,997,492 - +2.7
1,997,492 - -1.8
1,997,688 + -1.7
1,997,688 + -0.8
1,997,688 + -1.0
1,997,689 - -0.5
1,997,689 - -2.0
1,997,689 - +0.8
1,997,851 - Psyr_1758 0.19 +0.2
1,997,851 - Psyr_1758 0.19 -2.3
1,997,937 + Psyr_1758 0.23 -0.4
1,997,937 + Psyr_1758 0.23 -0.5
1,997,938 - Psyr_1758 0.23 -0.8
1,997,938 - Psyr_1758 0.23 -1.0
1,997,938 - Psyr_1758 0.23 -1.3
1,997,938 - Psyr_1758 0.23 -0.4
1,998,000 + Psyr_1758 0.27 -1.6
1,998,001 - Psyr_1758 0.27 +0.9
1,998,001 - Psyr_1758 0.27 -1.5
1,998,298 + Psyr_1758 0.43 -2.9
1,998,582 + Psyr_1758 0.58 -1.0
1,998,585 + Psyr_1758 0.58 -1.9
1,998,585 + Psyr_1758 0.58 -0.1
1,998,585 + Psyr_1758 0.58 -1.0
1,998,586 - Psyr_1758 0.58 -2.0
1,998,599 + Psyr_1758 0.59 +0.2
1,998,599 + Psyr_1758 0.59 -0.5
1,998,599 + Psyr_1758 0.59 +0.8
1,998,600 - Psyr_1758 0.59 -2.7
1,998,600 - Psyr_1758 0.59 +0.2
1,998,612 + Psyr_1758 0.60 -0.4
1,998,613 - Psyr_1758 0.60 -2.2
1,998,613 - Psyr_1758 0.60 -1.2
1,998,613 - Psyr_1758 0.60 -1.2
1,998,666 + Psyr_1758 0.63 -2.4
1,998,667 - Psyr_1758 0.63 -0.6
1,998,667 - Psyr_1758 0.63 -0.4
1,998,690 - Psyr_1758 0.64 -1.5
1,998,705 + Psyr_1758 0.65 -1.4
1,998,706 - Psyr_1758 0.65 -2.4
1,998,885 + Psyr_1758 0.74 -1.3
1,998,885 + Psyr_1758 0.74 +0.2
1,998,885 + Psyr_1758 0.74 +0.5
1,998,886 - Psyr_1758 0.74 -0.1
1,998,897 + Psyr_1758 0.75 -0.5
1,998,897 + Psyr_1758 0.75 -1.3
1,998,897 + Psyr_1758 0.75 -0.8
1,998,897 + Psyr_1758 0.75 +0.5
1,998,897 + Psyr_1758 0.75 -1.0
1,998,897 + Psyr_1758 0.75 -0.7
1,998,897 + Psyr_1758 0.75 +1.6
1,998,897 + Psyr_1758 0.75 -0.4
1,998,898 - Psyr_1758 0.75 -1.8
1,998,898 - Psyr_1758 0.75 -0.4
1,998,898 - Psyr_1758 0.75 -0.6
1,998,898 - Psyr_1758 0.75 -1.0
1,998,898 - Psyr_1758 0.75 -0.4
1,998,898 - Psyr_1758 0.75 -0.8
1,998,898 - Psyr_1758 0.75 -1.2
1,998,898 - Psyr_1758 0.75 -1.2
1,998,898 - Psyr_1758 0.75 -1.4
1,998,997 - Psyr_1758 0.80 +0.6
1,998,997 - Psyr_1758 0.80 +0.4
1,999,098 + Psyr_1758 0.86 -1.5
1,999,407 + +2.2
1,999,409 + -1.4
1,999,419 + -0.0
1,999,487 + -0.0
1,999,487 + +1.6
1,999,504 + -0.8
1,999,607 + Psyr_1759 0.14 -0.7
1,999,649 + Psyr_1759 0.16 -1.8
1,999,736 + Psyr_1759 0.21 -0.2
1,999,736 + Psyr_1759 0.21 -0.2
1,999,736 + Psyr_1759 0.21 -0.8
1,999,737 - Psyr_1759 0.21 +0.6
1,999,737 - Psyr_1759 0.21 -0.6
1,999,737 - Psyr_1759 0.21 +0.2
1,999,799 + Psyr_1759 0.24 -1.8
1,999,800 - Psyr_1759 0.24 -1.8
1,999,800 - Psyr_1759 0.24 +0.5
2,000,087 + Psyr_1759 0.40 -1.2
2,000,087 + Psyr_1759 0.40 +0.4
2,000,087 + Psyr_1759 0.40 -1.0
2,000,087 + Psyr_1759 0.40 -0.8
2,000,088 - Psyr_1759 0.40 -2.4
2,000,088 - Psyr_1759 0.40 +0.5
2,000,291 + Psyr_1759 0.51 -1.2
2,000,327 + Psyr_1759 0.53 +1.2
2,000,327 + Psyr_1759 0.53 -2.0
2,000,327 + Psyr_1759 0.53 -0.2
2,000,327 + Psyr_1759 0.53 -2.2
2,000,327 + Psyr_1759 0.53 +0.3
2,000,327 + Psyr_1759 0.53 -0.3
2,000,327 + Psyr_1759 0.53 -1.1
2,000,327 + Psyr_1759 0.53 -0.4
2,000,327 + Psyr_1759 0.53 +0.2
2,000,327 + Psyr_1759 0.53 -1.8
2,000,328 - Psyr_1759 0.53 -1.8
2,000,328 - Psyr_1759 0.53 -1.3
2,000,328 - Psyr_1759 0.53 +0.1
2,000,328 - Psyr_1759 0.53 -1.8
2,000,328 - Psyr_1759 0.53 -1.1
2,000,328 - Psyr_1759 0.53 +0.8
2,000,328 - Psyr_1759 0.53 +0.9
2,000,328 - Psyr_1759 0.53 +0.4

Or see this region's nucleotide sequence