Experiment: KB with Nalidixic 12.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1714 and Psyr_1715 overlap by 4 nucleotides Psyr_1715 and Psyr_1716 are separated by 42 nucleotides
Psyr_1714: Psyr_1714 - exonuclease SbcC, at 1,939,647 to 1,943,291
_1714
Psyr_1715: Psyr_1715 - Exodeoxyribonuclease I subunit D, at 1,943,288 to 1,944,532
_1715
Psyr_1716: Psyr_1716 - conserved hypothetical protein, at 1,944,575 to 1,946,233
_1716
Position (kb) 1943
1944
1945 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 1942.673 kb on + strand, within Psyr_1714 at 1942.673 kb on + strand, within Psyr_1714 at 1942.673 kb on + strand, within Psyr_1714 at 1942.703 kb on - strand, within Psyr_1714 at 1942.932 kb on - strand at 1943.102 kb on + strand at 1943.103 kb on - strand at 1943.103 kb on - strand at 1943.865 kb on + strand, within Psyr_1715 at 1943.865 kb on + strand, within Psyr_1715 at 1943.865 kb on + strand, within Psyr_1715 at 1943.865 kb on + strand, within Psyr_1715 at 1943.865 kb on + strand, within Psyr_1715 at 1943.865 kb on + strand, within Psyr_1715 at 1943.865 kb on + strand, within Psyr_1715 at 1943.866 kb on - strand, within Psyr_1715 at 1943.866 kb on - strand, within Psyr_1715 at 1943.866 kb on - strand, within Psyr_1715 at 1943.866 kb on - strand, within Psyr_1715 at 1943.866 kb on - strand, within Psyr_1715 at 1943.866 kb on - strand, within Psyr_1715 at 1943.866 kb on - strand, within Psyr_1715 at 1944.061 kb on - strand, within Psyr_1715 at 1944.343 kb on - strand, within Psyr_1715 at 1944.407 kb on + strand, within Psyr_1715 at 1944.407 kb on + strand, within Psyr_1715 at 1944.407 kb on + strand, within Psyr_1715 at 1944.407 kb on + strand, within Psyr_1715 at 1944.407 kb on + strand, within Psyr_1715 at 1944.407 kb on + strand, within Psyr_1715 at 1944.407 kb on + strand, within Psyr_1715 at 1944.407 kb on + strand, within Psyr_1715 at 1944.407 kb on + strand, within Psyr_1715 at 1944.407 kb on + strand, within Psyr_1715 at 1944.408 kb on - strand at 1944.408 kb on - strand at 1944.408 kb on - strand at 1944.408 kb on - strand at 1944.408 kb on - strand at 1944.408 kb on - strand at 1944.408 kb on - strand at 1944.408 kb on - strand at 1944.408 kb on - strand at 1944.539 kb on - strand at 1944.549 kb on - strand at 1944.550 kb on + strand at 1944.577 kb on - strand at 1944.577 kb on - strand at 1944.625 kb on + strand at 1944.625 kb on + strand at 1944.625 kb on + strand at 1944.625 kb on + strand at 1944.625 kb on + strand at 1944.626 kb on - strand at 1944.626 kb on - strand at 1944.699 kb on + strand at 1944.700 kb on - strand at 1945.360 kb on + strand, within Psyr_1716 at 1945.399 kb on + strand, within Psyr_1716
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nalidixic 12.5 ug/ml remove 1,942,673 + Psyr_1714 0.83 -2.2 1,942,673 + Psyr_1714 0.83 +1.1 1,942,673 + Psyr_1714 0.83 -1.2 1,942,703 - Psyr_1714 0.84 -0.7 1,942,932 - -2.0 1,943,102 + +0.1 1,943,103 - +0.2 1,943,103 - +3.5 1,943,865 + Psyr_1715 0.46 +4.5 1,943,865 + Psyr_1715 0.46 +1.1 1,943,865 + Psyr_1715 0.46 +0.3 1,943,865 + Psyr_1715 0.46 +0.0 1,943,865 + Psyr_1715 0.46 -1.1 1,943,865 + Psyr_1715 0.46 +0.4 1,943,865 + Psyr_1715 0.46 +0.6 1,943,866 - Psyr_1715 0.46 +0.2 1,943,866 - Psyr_1715 0.46 -0.9 1,943,866 - Psyr_1715 0.46 +0.6 1,943,866 - Psyr_1715 0.46 -0.7 1,943,866 - Psyr_1715 0.46 +0.6 1,943,866 - Psyr_1715 0.46 +1.1 1,943,866 - Psyr_1715 0.46 -1.3 1,944,061 - Psyr_1715 0.62 -1.4 1,944,343 - Psyr_1715 0.85 +0.1 1,944,407 + Psyr_1715 0.90 -1.7 1,944,407 + Psyr_1715 0.90 +0.5 1,944,407 + Psyr_1715 0.90 +2.1 1,944,407 + Psyr_1715 0.90 +0.8 1,944,407 + Psyr_1715 0.90 +1.1 1,944,407 + Psyr_1715 0.90 +0.1 1,944,407 + Psyr_1715 0.90 -2.0 1,944,407 + Psyr_1715 0.90 -0.4 1,944,407 + Psyr_1715 0.90 -0.6 1,944,407 + Psyr_1715 0.90 -0.4 1,944,408 - -0.4 1,944,408 - +2.1 1,944,408 - +0.9 1,944,408 - +1.3 1,944,408 - +0.5 1,944,408 - +1.1 1,944,408 - -0.7 1,944,408 - +0.4 1,944,408 - +2.1 1,944,539 - +0.4 1,944,549 - -1.4 1,944,550 + -1.8 1,944,577 - +0.5 1,944,577 - +0.2 1,944,625 + -0.7 1,944,625 + +0.7 1,944,625 + +0.8 1,944,625 + +0.3 1,944,625 + +0.9 1,944,626 - +1.1 1,944,626 - +7.0 1,944,699 + +0.6 1,944,700 - -0.3 1,945,360 + Psyr_1716 0.47 -1.7 1,945,399 + Psyr_1716 0.50 +1.6
Or see this region's nucleotide sequence